FC929969

Overview
NameFC929969
Unique NameFC929969
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length607
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_SALPB (3-dehydroquinate synthase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=aroB PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.212e-25
Identity = 63/121 (52.07%), Postives = 80/121 (66.12%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I +GL + P        G +V++VTN T+APLYLDKV   L R    V+V++VILPDGE YK++  L  VF   ++    R  T VALGGGVIGD+ G+AAASY RGV
Sbjct:    4 ITVTLGERSYPITIAAGLFNEPASFLPLKSGDQVMLVTNETLAPLYLDKVRGVLERAG--VNVDSVILPDGEQYKSLTVLDTVFTALLKKPHGRDTTLVALGGGVIGDLTGFAAASYQRGV 122
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_SALPA (3-dehydroquinate synthase OS=Salmonella paratyphi A GN=aroB PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.212e-25
Identity = 63/121 (52.07%), Postives = 80/121 (66.12%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I +GL + P        G +V++VTN T+APLYLDKV   L R    V+V++VILPDGE YK++  L  VF   ++    R  T VALGGGVIGD+ G+AAASY RGV
Sbjct:    4 ITVTLGERSYPITIAAGLFNEPASFLPLKSGDQVMLVTNETLAPLYLDKVRGVLERAG--VNVDSVILPDGEQYKSLTVLDTVFTALLKKPHGRDTTLVALGGGVIGDLTGFAAASYQRGV 122
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_SALNS (3-dehydroquinate synthase OS=Salmonella newport (strain SL254) GN=aroB PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.212e-25
Identity = 63/121 (52.07%), Postives = 80/121 (66.12%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I +GL + P        G +V++VTN T+APLYLDKV   L R    V+V++VILPDGE YK++  L  VF   ++    R  T VALGGGVIGD+ G+AAASY RGV
Sbjct:    4 ITVTLGERSYPITIAAGLFNEPASFLPLKSGDQVMLVTNETLAPLYLDKVRGVLERAG--VNVDSVILPDGEQYKSLTVLDTVFTALLKKPHGRDTTLVALGGGVIGDLTGFAAASYQRGV 122
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_SALHS (3-dehydroquinate synthase OS=Salmonella heidelberg (strain SL476) GN=aroB PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.212e-25
Identity = 63/121 (52.07%), Postives = 80/121 (66.12%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I +GL + P        G +V++VTN T+APLYLDKV   L R    V+V++VILPDGE YK++  L  VF   ++    R  T VALGGGVIGD+ G+AAASY RGV
Sbjct:    4 ITVTLGERSYPITIAAGLFNEPASFLPLKSGDQVMLVTNETLAPLYLDKVRGVLERAG--VNVDSVILPDGEQYKSLTVLDTVFTALLKKPHGRDTTLVALGGGVIGDLTGFAAASYQRGV 122
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_SALG2 (3-dehydroquinate synthase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=aroB PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.212e-25
Identity = 63/121 (52.07%), Postives = 80/121 (66.12%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I +GL + P        G +V++VTN T+APLYLDKV   L R    V+V++VILPDGE YK++  L  VF   ++    R  T VALGGGVIGD+ G+AAASY RGV
Sbjct:    4 ITVTLGERSYPITIAAGLFNEPASFLPLKSGDQVMLVTNETLAPLYLDKVRGVLERAG--VNVDSVILPDGEQYKSLTVLDTVFTALLKKPHGRDTTLVALGGGVIGDLTGFAAASYQRGV 122
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_SALEP (3-dehydroquinate synthase OS=Salmonella enteritidis PT4 (strain P125109) GN=aroB PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.212e-25
Identity = 63/121 (52.07%), Postives = 80/121 (66.12%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I +GL + P        G +V++VTN T+APLYLDKV   L R    V+V++VILPDGE YK++  L  VF   ++    R  T VALGGGVIGD+ G+AAASY RGV
Sbjct:    4 ITVTLGERSYPITIAAGLFNEPASFLPLKSGDQVMLVTNETLAPLYLDKVRGVLERAG--VNVDSVILPDGEQYKSLTVLDTVFTALLKKPHGRDTTLVALGGGVIGDLTGFAAASYQRGV 122
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_SALDC (3-dehydroquinate synthase OS=Salmonella dublin (strain CT_02021853) GN=aroB PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.212e-25
Identity = 63/121 (52.07%), Postives = 80/121 (66.12%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I +GL + P        G +V++VTN T+APLYLDKV   L R    V+V++VILPDGE YK++  L  VF   ++    R  T VALGGGVIGD+ G+AAASY RGV
Sbjct:    4 ITVTLGERSYPITIAAGLFNEPASFLPLKSGDQVMLVTNETLAPLYLDKVRGVLERAG--VNVDSVILPDGEQYKSLTVLDTVFTALLKKPHGRDTTLVALGGGVIGDLTGFAAASYQRGV 122
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_SALCH (3-dehydroquinate synthase OS=Salmonella choleraesuis GN=aroB PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.212e-25
Identity = 63/121 (52.07%), Postives = 80/121 (66.12%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I +GL + P        G +V++VTN T+APLYLDKV   L R    V+V++VILPDGE YK++  L  VF   ++    R  T VALGGGVIGD+ G+AAASY RGV
Sbjct:    4 ITVTLGERSYPITIAAGLFNEPASFLPLKSGDQVMLVTNETLAPLYLDKVRGVLERAG--VNVDSVILPDGEQYKSLTVLDTVFTALLKKPHGRDTTLVALGGGVIGDLTGFAAASYQRGV 122
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_SALAR (3-dehydroquinate synthase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=aroB PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.212e-25
Identity = 63/121 (52.07%), Postives = 80/121 (66.12%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I +GL + P        G +V++VTN T+APLYLDKV   L R    V+V++VILPDGE YK++  L  VF   ++    R  T VALGGGVIGD+ G+AAASY RGV
Sbjct:    4 ITVTLGERSYPITIAAGLFNEPASFLPLKSGDQVMLVTNETLAPLYLDKVRGVLQRAG--VNVDSVILPDGERYKSLTVLDTVFTALLKKPHGRDTTLVALGGGVIGDLTGFAAASYQRGV 122
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_SALA4 (3-dehydroquinate synthase OS=Salmonella agona (strain SL483) GN=aroB PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.212e-25
Identity = 63/121 (52.07%), Postives = 80/121 (66.12%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I +GL + P        G +V++VTN T+APLYLDKV   L R    V+V++VILPDGE YK++  L  VF   ++    R  T VALGGGVIGD+ G+AAASY RGV
Sbjct:    4 ITVTLGERSYPITIAAGLFNEPASFLPLKSGDQVMLVTNETLAPLYLDKVRGVLERAG--VNVDSVILPDGEQYKSLTVLDTVFTALLKKPHGRDTTLVALGGGVIGDLTGFAAASYQRGV 122
The following BLAST results are available for this feature:
BLAST of FC929969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 407
Match NameE-valueIdentityDescription
AROB_SALPB1.212e-2552.073-dehydroquinate synthase OS=Salmonella paratyphi ... [more]
AROB_SALPA1.212e-2552.073-dehydroquinate synthase OS=Salmonella paratyphi ... [more]
AROB_SALNS1.212e-2552.073-dehydroquinate synthase OS=Salmonella newport (s... [more]
AROB_SALHS1.212e-2552.073-dehydroquinate synthase OS=Salmonella heidelberg... [more]
AROB_SALG21.212e-2552.073-dehydroquinate synthase OS=Salmonella gallinarum... [more]
AROB_SALEP1.212e-2552.073-dehydroquinate synthase OS=Salmonella enteritidi... [more]
AROB_SALDC1.212e-2552.073-dehydroquinate synthase OS=Salmonella dublin (st... [more]
AROB_SALCH1.212e-2552.073-dehydroquinate synthase OS=Salmonella choleraesu... [more]
AROB_SALAR1.212e-2552.073-dehydroquinate synthase OS=Salmonella arizonae (... [more]
AROB_SALA41.212e-2552.073-dehydroquinate synthase OS=Salmonella agona (str... [more]

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Properties
Property NameValue
Genbank descriptionC34002D05EF PostHarvC1 Citrus clementina cDNA clone C34002D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929969 ID=FC929969; Name=FC929969; organism=Citrus clementina; type=EST; length=607bp
ATCACGGCCAACTCATTCTCTCCTTCGCTGTCATCCAAACACGCGTCCAA
ACAGCCCGAGTTATATACCTGGTTTCGCAGCCCTAACGCGATTGCGCTTA
AGTCTCCGCCCTTGGCACCGGCTTCTATTGAGTTGAAACGGAACGGCGGT
TTCGTCCTGGGCCAGTATAAGGTGAACTGCAGGATATACGCGAGTAGTGC
GGCTCCGATGATGGATCAAACGGTTAGTAAAGCTCCTACGATTGTTGAGG
TGGATTTGGGACAGCGGAGCTACCCGATTTATATCGGATCCGGACTTCTG
GATCATCCCGACCTGCTCCAAAAGCATGTTCAAGGAAAGAAAGTTCTTGT
GGTTACTAACAACACAGTTGCACCATTGTACCTGGATAAAGTTACTGATG
CTTTGACAAGAGGGAATCCAAATGTTTCAGTTGAGAATGTGATTCTGCCA
GATGGTGAGAATTACAAGAACATGGATACTCTCATGAAAGTCTTTGACAA
GGCCATCGAGTCTCGGCTGGACCGGCGATGTACATTTGTTGCACTTGGAG
GTGGTGTTATTGGTGACATGTGTGGTTATGCTGCAGCCTCTTATCTTCGA
GGTGTTA
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