FC929969

Overview
NameFC929969
Unique NameFC929969
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length607
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_SHISS (3-dehydroquinate synthase OS=Shigella sonnei (strain Ss046) GN=aroB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.584e-25
Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I SGL + P        G++V++VTN T+APLYLDKV   L +    V+V++VILPDGE YK++  L  VF   ++    R  T VALGGGV+GD+ G+AAASY RGV
Sbjct:    4 IVVTLGERSYPITIASGLFNEPASFLPLKSGEQVMLVTNETLAPLYLDKVRGVLEQAG--VNVDSVILPDGEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQRGV 122
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_SHIDS (3-dehydroquinate synthase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=aroB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.584e-25
Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I SGL + P        G++V++VTN T+APLYLDKV   L +    V+V++VILPDGE YK++  L  VF   ++    R  T VALGGGV+GD+ G+AAASY RGV
Sbjct:    4 IVVTLGERSYPITIASGLFNEPASFLPLKSGEQVMLVTNETLAPLYLDKVRGVLEQAG--VNVDSVILPDGEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQRGV 122
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_SHIBS (3-dehydroquinate synthase OS=Shigella boydii serotype 4 (strain Sb227) GN=aroB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.584e-25
Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I SGL + P        G++V++VTN T+APLYLDKV   L +    V+V++VILPDGE YK++  L  VF   ++    R  T VALGGGV+GD+ G+AAASY RGV
Sbjct:    4 IVVTLGERSYPITIASGLFNEPASFLPLKSGEQVMLVTNETLAPLYLDKVRGVLEQAG--VNVDSVILPDGEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQRGV 122
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_SHIB3 (3-dehydroquinate synthase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=aroB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.584e-25
Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I SGL + P        G++V++VTN T+APLYLDKV   L +    V+V++VILPDGE YK++  L  VF   ++    R  T VALGGGV+GD+ G+AAASY RGV
Sbjct:    4 IVVTLGERSYPITIASGLFNEPASFLPLKSGEQVMLVTNETLAPLYLDKVRGVLEQAG--VNVDSVILPDGEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQRGV 122
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_ECOUT (3-dehydroquinate synthase OS=Escherichia coli (strain UTI89 / UPEC) GN=aroB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.584e-25
Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I SGL + P        G++V++VTN T+APLYLDKV   L +    V+V++VILPDGE YK++  L  VF   ++    R  T VALGGGV+GD+ G+AAASY RGV
Sbjct:    4 IVVTLGERSYPITIASGLFNEPASFLPLKSGEQVMLVTNETLAPLYLDKVRGVLEQAG--VNVDSVILPDGEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQRGV 122
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_ECOSM (3-dehydroquinate synthase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=aroB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.584e-25
Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I SGL + P        G++V++VTN T+APLYLDKV   L +    V+V++VILPDGE YK++  L  VF   ++    R  T VALGGGV+GD+ G+AAASY RGV
Sbjct:    4 IVVTLGERSYPITIASGLFNEPASFLPLKSGEQVMLVTNETLAPLYLDKVRGVLEQAG--VNVDSVILPDGEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQRGV 122
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_ECOSE (3-dehydroquinate synthase OS=Escherichia coli (strain SE11) GN=aroB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.584e-25
Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I SGL + P        G++V++VTN T+APLYLDKV   L +    V+V++VILPDGE YK++  L  VF   ++    R  T VALGGGV+GD+ G+AAASY RGV
Sbjct:    4 IVVTLGERSYPITIASGLFNEPASFLPLKSGEQVMLVTNETLAPLYLDKVRGVLEQAG--VNVDSVILPDGEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQRGV 122
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_ECOLU (3-dehydroquinate synthase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=aroB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.584e-25
Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I SGL + P        G++V++VTN T+APLYLDKV   L +    V+V++VILPDGE YK++  L  VF   ++    R  T VALGGGV+GD+ G+AAASY RGV
Sbjct:    4 IVVTLGERSYPITIASGLFNEPASFLPLKSGEQVMLVTNETLAPLYLDKVRGVLEQAG--VNVDSVILPDGEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQRGV 122
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_ECOLI (3-dehydroquinate synthase OS=Escherichia coli (strain K12) GN=aroB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.584e-25
Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I SGL + P        G++V++VTN T+APLYLDKV   L +    V+V++VILPDGE YK++  L  VF   ++    R  T VALGGGV+GD+ G+AAASY RGV
Sbjct:    4 IVVTLGERSYPITIASGLFNEPASFLPLKSGEQVMLVTNETLAPLYLDKVRGVLEQAG--VNVDSVILPDGEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQRGV 122
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_ECOLC (3-dehydroquinate synthase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=aroB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.584e-25
Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I SGL + P        G++V++VTN T+APLYLDKV   L +    V+V++VILPDGE YK++  L  VF   ++    R  T VALGGGV+GD+ G+AAASY RGV
Sbjct:    4 IVVTLGERSYPITIASGLFNEPASFLPLKSGEQVMLVTNETLAPLYLDKVRGVLEQAG--VNVDSVILPDGEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQRGV 122
The following BLAST results are available for this feature:
BLAST of FC929969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 407
Match NameE-valueIdentityDescription
AROB_SHISS1.584e-2551.243-dehydroquinate synthase OS=Shigella sonnei (stra... [more]
AROB_SHIDS1.584e-2551.243-dehydroquinate synthase OS=Shigella dysenteriae ... [more]
AROB_SHIBS1.584e-2551.243-dehydroquinate synthase OS=Shigella boydii serot... [more]
AROB_SHIB31.584e-2551.243-dehydroquinate synthase OS=Shigella boydii serot... [more]
AROB_ECOUT1.584e-2551.243-dehydroquinate synthase OS=Escherichia coli (str... [more]
AROB_ECOSM1.584e-2551.243-dehydroquinate synthase OS=Escherichia coli (str... [more]
AROB_ECOSE1.584e-2551.243-dehydroquinate synthase OS=Escherichia coli (str... [more]
AROB_ECOLU1.584e-2551.243-dehydroquinate synthase OS=Escherichia coli O17:... [more]
AROB_ECOLI1.584e-2551.243-dehydroquinate synthase OS=Escherichia coli (str... [more]
AROB_ECOLC1.584e-2551.243-dehydroquinate synthase OS=Escherichia coli (str... [more]

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Properties
Property NameValue
Genbank descriptionC34002D05EF PostHarvC1 Citrus clementina cDNA clone C34002D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929969 ID=FC929969; Name=FC929969; organism=Citrus clementina; type=EST; length=607bp
ATCACGGCCAACTCATTCTCTCCTTCGCTGTCATCCAAACACGCGTCCAA
ACAGCCCGAGTTATATACCTGGTTTCGCAGCCCTAACGCGATTGCGCTTA
AGTCTCCGCCCTTGGCACCGGCTTCTATTGAGTTGAAACGGAACGGCGGT
TTCGTCCTGGGCCAGTATAAGGTGAACTGCAGGATATACGCGAGTAGTGC
GGCTCCGATGATGGATCAAACGGTTAGTAAAGCTCCTACGATTGTTGAGG
TGGATTTGGGACAGCGGAGCTACCCGATTTATATCGGATCCGGACTTCTG
GATCATCCCGACCTGCTCCAAAAGCATGTTCAAGGAAAGAAAGTTCTTGT
GGTTACTAACAACACAGTTGCACCATTGTACCTGGATAAAGTTACTGATG
CTTTGACAAGAGGGAATCCAAATGTTTCAGTTGAGAATGTGATTCTGCCA
GATGGTGAGAATTACAAGAACATGGATACTCTCATGAAAGTCTTTGACAA
GGCCATCGAGTCTCGGCTGGACCGGCGATGTACATTTGTTGCACTTGGAG
GTGGTGTTATTGGTGACATGTGTGGTTATGCTGCAGCCTCTTATCTTCGA
GGTGTTA
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