FC929969

Overview
NameFC929969
Unique NameFC929969
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length607
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_ECOL6 (3-dehydroquinate synthase OS=Escherichia coli O6 GN=aroB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.584e-25
Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I SGL + P        G++V++VTN T+APLYLDKV   L +    V+V++VILPDGE YK++  L  VF   ++    R  T VALGGGV+GD+ G+AAASY RGV
Sbjct:    4 IVVTLGERSYPITIASGLFNEPASFLPLKSGEQVMLVTNETLAPLYLDKVRGVLEQAG--VNVDSVILPDGEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQRGV 122
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_ECOL5 (3-dehydroquinate synthase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=aroB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.584e-25
Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I SGL + P        G++V++VTN T+APLYLDKV   L +    V+V++VILPDGE YK++  L  VF   ++    R  T VALGGGV+GD+ G+AAASY RGV
Sbjct:    4 IVVTLGERSYPITIASGLFNEPASFLPLKSGEQVMLVTNETLAPLYLDKVRGVLEQAG--VNVDSVILPDGEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQRGV 122
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_ECOK1 (3-dehydroquinate synthase OS=Escherichia coli O1:K1 / APEC GN=aroB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.584e-25
Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I SGL + P        G++V++VTN T+APLYLDKV   L +    V+V++VILPDGE YK++  L  VF   ++    R  T VALGGGV+GD+ G+AAASY RGV
Sbjct:    4 IVVTLGERSYPITIASGLFNEPASFLPLKSGEQVMLVTNETLAPLYLDKVRGVLEQAG--VNVDSVILPDGEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQRGV 122
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_ECOHS (3-dehydroquinate synthase OS=Escherichia coli O9:H4 (strain HS) GN=aroB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.584e-25
Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I SGL + P        G++V++VTN T+APLYLDKV   L +    V+V++VILPDGE YK++  L  VF   ++    R  T VALGGGV+GD+ G+AAASY RGV
Sbjct:    4 IVVTLGERSYPITIASGLFNEPASFLPLKSGEQVMLVTNETLAPLYLDKVRGVLEQAG--VNVDSVILPDGEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQRGV 122
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_ECODH (3-dehydroquinate synthase OS=Escherichia coli (strain K12 / DH10B) GN=aroB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.584e-25
Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I SGL + P        G++V++VTN T+APLYLDKV   L +    V+V++VILPDGE YK++  L  VF   ++    R  T VALGGGV+GD+ G+AAASY RGV
Sbjct:    4 IVVTLGERSYPITIASGLFNEPASFLPLKSGEQVMLVTNETLAPLYLDKVRGVLEQAG--VNVDSVILPDGEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQRGV 122
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_ECOBW (3-dehydroquinate synthase OS=Escherichia coli (strain K12 / BW2952) GN=aroB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.584e-25
Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I SGL + P        G++V++VTN T+APLYLDKV   L +    V+V++VILPDGE YK++  L  VF   ++    R  T VALGGGV+GD+ G+AAASY RGV
Sbjct:    4 IVVTLGERSYPITIASGLFNEPASFLPLKSGEQVMLVTNETLAPLYLDKVRGVLEQAG--VNVDSVILPDGEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQRGV 122
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_ECO8A (3-dehydroquinate synthase OS=Escherichia coli O8 (strain IAI1) GN=aroB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.584e-25
Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I SGL + P        G++V++VTN T+APLYLDKV   L +    V+V++VILPDGE YK++  L  VF   ++    R  T VALGGGV+GD+ G+AAASY RGV
Sbjct:    4 IVVTLGERSYPITIASGLFNEPASFLPLKSGEQVMLVTNETLAPLYLDKVRGVLEQAG--VNVDSVILPDGEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQRGV 122
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_ECO81 (3-dehydroquinate synthase OS=Escherichia coli O81 (strain ED1a) GN=aroB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.584e-25
Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I SGL + P        G++V++VTN T+APLYLDKV   L +    V+V++VILPDGE YK++  L  VF   ++    R  T VALGGGV+GD+ G+AAASY RGV
Sbjct:    4 IVVTLGERSYPITIASGLFNEPASFLPLKSGEQVMLVTNETLAPLYLDKVRGVLEQAG--VNVDSVILPDGEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQRGV 122
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_ECO7I (3-dehydroquinate synthase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=aroB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.584e-25
Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I SGL + P        G++V++VTN T+APLYLDKV   L +    V+V++VILPDGE YK++  L  VF   ++    R  T VALGGGV+GD+ G+AAASY RGV
Sbjct:    4 IVVTLGERSYPITIASGLFNEPASFLPLKSGEQVMLVTNETLAPLYLDKVRGVLEQAG--VNVDSVILPDGEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQRGV 122
[Close]
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_ECO5E (3-dehydroquinate synthase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=aroB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.584e-25
Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + V LG+RSYPI I SGL + P        G++V++VTN T+APLYLDKV   L +    V+V++VILPDGE YK++  L  VF   ++    R  T VALGGGV+GD+ G+AAASY RGV
Sbjct:    4 IVVTLGERSYPITIASGLFNEPASFLPLKSGEQVMLVTNETLAPLYLDKVRGVLEQAG--VNVDSVILPDGEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQRGV 122
The following BLAST results are available for this feature:
BLAST of FC929969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 407
Match NameE-valueIdentityDescription
AROB_ECOL61.584e-2551.243-dehydroquinate synthase OS=Escherichia coli O6 G... [more]
AROB_ECOL51.584e-2551.243-dehydroquinate synthase OS=Escherichia coli O6:K... [more]
AROB_ECOK11.584e-2551.243-dehydroquinate synthase OS=Escherichia coli O1:K... [more]
AROB_ECOHS1.584e-2551.243-dehydroquinate synthase OS=Escherichia coli O9:H... [more]
AROB_ECODH1.584e-2551.243-dehydroquinate synthase OS=Escherichia coli (str... [more]
AROB_ECOBW1.584e-2551.243-dehydroquinate synthase OS=Escherichia coli (str... [more]
AROB_ECO8A1.584e-2551.243-dehydroquinate synthase OS=Escherichia coli O8 (... [more]
AROB_ECO811.584e-2551.243-dehydroquinate synthase OS=Escherichia coli O81 ... [more]
AROB_ECO7I1.584e-2551.243-dehydroquinate synthase OS=Escherichia coli O7:K... [more]
AROB_ECO5E1.584e-2551.243-dehydroquinate synthase OS=Escherichia coli O157... [more]

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Properties
Property NameValue
Genbank descriptionC34002D05EF PostHarvC1 Citrus clementina cDNA clone C34002D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929969 ID=FC929969; Name=FC929969; organism=Citrus clementina; type=EST; length=607bp
ATCACGGCCAACTCATTCTCTCCTTCGCTGTCATCCAAACACGCGTCCAA
ACAGCCCGAGTTATATACCTGGTTTCGCAGCCCTAACGCGATTGCGCTTA
AGTCTCCGCCCTTGGCACCGGCTTCTATTGAGTTGAAACGGAACGGCGGT
TTCGTCCTGGGCCAGTATAAGGTGAACTGCAGGATATACGCGAGTAGTGC
GGCTCCGATGATGGATCAAACGGTTAGTAAAGCTCCTACGATTGTTGAGG
TGGATTTGGGACAGCGGAGCTACCCGATTTATATCGGATCCGGACTTCTG
GATCATCCCGACCTGCTCCAAAAGCATGTTCAAGGAAAGAAAGTTCTTGT
GGTTACTAACAACACAGTTGCACCATTGTACCTGGATAAAGTTACTGATG
CTTTGACAAGAGGGAATCCAAATGTTTCAGTTGAGAATGTGATTCTGCCA
GATGGTGAGAATTACAAGAACATGGATACTCTCATGAAAGTCTTTGACAA
GGCCATCGAGTCTCGGCTGGACCGGCGATGTACATTTGTTGCACTTGGAG
GTGGTGTTATTGGTGACATGTGTGGTTATGCTGCAGCCTCTTATCTTCGA
GGTGTTA
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