FC929974

Overview
NameFC929974
Unique NameFC929974
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929974 vs. ExPASy Swiss-Prot
Match: VA712_ARATH (Vesicle-associated membrane protein 712 OS=Arabidopsis thaliana GN=VAMP712 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.400e-18
Identity = 55/173 (31.79%), Postives = 94/173 (54.34%), Query Frame = 2
Query:  197 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKY-TYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIERFWIVGRG 712
            ++Y+ V++GTVVLAE ++ S N STIA Q L+K+P +   + +YS D + F+     G   L +ADE  GR +PF FLE +   F + YG +I + +                    AY ++ EF   L + ++Y  + P     +S++K ++ +V+ +M++NI+   I+ RG
Sbjct:    3 ILYALVARGTVVLAELSTTSTNASTIAKQILEKIPGNGDSHVSYSQDRYVFHVKRTDGLTVLCMADEDAGRRIPFSFLEDIHQRFVRTYGRAIHSAQ--------------------AYAMNDEFSRVLNQQIEYYSNDP-NADTISRIKGEMNQVRDVMIENIDN--ILDRG 152          
BLAST of FC929974 vs. ExPASy Swiss-Prot
Match: VA714_ARATH (Vesicle-associated membrane protein 714 OS=Arabidopsis thaliana GN=VAMP714 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.823e-16
Identity = 51/174 (29.31%), Postives = 95/174 (54.60%), Query Frame = 2
Query:  197 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPA--SSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIERFWIVGRG 712
            ++Y+ V++GTVVLAE ++ +GN   +  + L+KL    S  +  +S D + F+ L   G  FL +A+++ GR VPF +LE +   F + YG    N                    + AY ++ EF   L + M++  S+P  +  L++++ +++E++ +M++NIE+  I+ RG
Sbjct:    3 IVYAVVARGTVVLAEFSAVTGNTGAVVRRILEKLSPEISDERLCFSQDRYIFHILRSDGLTFLCMANDTFGRRVPFSYLEEIHMRFMKNYGKVAHN--------------------APAYAMNDEFSRVLHQQMEFFSSNP-SVDTLNRVRGEVSEIRSVMVENIEK--IMERG 153          
BLAST of FC929974 vs. ExPASy Swiss-Prot
Match: VAMP7_MOUSE (Vesicle-associated membrane protein 7 OS=Mus musculus GN=Vamp7 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16
Identity = 47/164 (28.66%), Postives = 85/164 (51.83%), Query Frame = 2
Query:  197 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIE 688
            ++++ V++GT +LA+H    GNF  +  Q L K+P+ ++K TYS   + F+++     V+L + D+   RS  F FL  VK  F+  YG+  Q                     ++ Y ++ EF   L   +++  S  + + K+ + +AQ+ E+KGIM+ NI+
Sbjct:    3 ILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYGSRAQT--------------------ALPYAMNSEFSSVLAAQLKH-HSENKSLDKVMETQAQVDELKGIMVRNID 145          
BLAST of FC929974 vs. ExPASy Swiss-Prot
Match: VAMP7_RAT (Vesicle-associated membrane protein 7 OS=Rattus norvegicus GN=Vamp7 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16
Identity = 46/164 (28.05%), Postives = 86/164 (52.44%), Query Frame = 2
Query:  197 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIE 688
            ++++ V++GT +LA+H    GNF  +  Q L K+P+ ++K TYS   + F+++     V+L + D+   RS  F FL  VK  F+  YG+  Q                     ++ Y ++ EF   L   +++  S  + + ++++ +AQ+ E+KGIM+ NI+
Sbjct:    3 ILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFGFLNEVKKRFQTTYGSRAQT--------------------ALPYAMNSEFSSVLAAQLKH-HSENQSLDRVTETQAQVDELKGIMVRNID 145          
BLAST of FC929974 vs. ExPASy Swiss-Prot
Match: VAMP7_HUMAN (Vesicle-associated membrane protein 7 OS=Homo sapiens GN=VAMP7 PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 2.015e-15
Identity = 46/164 (28.05%), Postives = 85/164 (51.83%), Query Frame = 2
Query:  197 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIE 688
            ++++ V++GT +LA+H    GNF  +  Q L K+P+ ++K TYS   + F+++     V+L + D+   RS  F FL  +K  F+  YG+  Q                     ++ Y ++ EF   L   +++  S  + + K+ + +AQ+ E+KGIM+ NI+
Sbjct:    3 ILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQT--------------------ALPYAMNSEFSSVLAAQLKH-HSENKGLDKVMETQAQVDELKGIMVRNID 145          
BLAST of FC929974 vs. ExPASy Swiss-Prot
Match: VAMP7_CHICK (Vesicle-associated membrane protein 7 OS=Gallus gallus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.015e-15
Identity = 45/164 (27.44%), Postives = 85/164 (51.83%), Query Frame = 2
Query:  197 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIE 688
            ++++ V++GT +LA+H    GNF  +  Q L K+P+ ++K TYS   + F+++     ++L + D+   RS  F FL  +K  F+  YG+  Q                     ++ Y ++ EF   L   ++Y  S  +   ++++ +AQ+ E+KGIM+ NI+
Sbjct:    3 ILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIIYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQT--------------------ALPYAMNSEFSSVLAAQLKY-HSESKGTDQVAETQAQVDELKGIMVRNID 145          
BLAST of FC929974 vs. ExPASy Swiss-Prot
Match: VAMP7_BOVIN (Vesicle-associated membrane protein 7 OS=Bos taurus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.015e-15
Identity = 46/164 (28.05%), Postives = 85/164 (51.83%), Query Frame = 2
Query:  197 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIE 688
            ++++ V++GT +LA+H    GNF  +  Q L K+P+ ++K TYS   + F+++     V+L + D+   RS  F FL  +K  F+  YG+  Q                     ++ Y ++ EF   L   +++  S  + + K+ + +AQ+ E+KGIM+ NI+
Sbjct:    3 ILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQT--------------------ALPYAMNSEFSSVLAAQLKH-HSENKGLDKVMETQAQVDELKGIMVRNID 145          
BLAST of FC929974 vs. ExPASy Swiss-Prot
Match: VAMP7_PONAB (Vesicle-associated membrane protein 7 OS=Pongo abelii GN=VAMP7 PE=2 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 7.658e-15
Identity = 45/164 (27.44%), Postives = 84/164 (51.22%), Query Frame = 2
Query:  197 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIE 688
            ++++ V++GT +LA+H    GNF  +  Q L K+P+ ++K TY    + F+++     V+L + D+   RS  F FL  +K  F+  YG+  Q                     ++ Y ++ EF   L   +++  S  + + K+ + +AQ+ E+KGIM+ NI+
Sbjct:    3 ILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYPHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQT--------------------ALPYAMNSEFSSVLAAQLKH-HSENKGLDKVMETQAQVDELKGIMVRNID 145          
BLAST of FC929974 vs. ExPASy Swiss-Prot
Match: VAM7A_DICDI (Vesicle-associated membrane protein 7A OS=Dictyostelium discoideum GN=vamp7A PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.352e-11
Identity = 48/170 (28.24%), Postives = 85/170 (50.00%), Query Frame = 2
Query:  182 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIER 691
            M+Q  ++Y+ VS   V L EH   +GNF  +A + + K+P +S K  Y+ + H F+++ ++   FL +  E +G  +P  FL  ++  F + YG S    ++ P A                      F   L+E M+Y  S+P+  +K++ +  Q++E KG + D IE+
Sbjct:    1 MSQTDILYACVSYKGVCLVEHKIANGNFIDLARRLITKIPPTSKKI-YTSENHNFHYISENDLAFLCLCHEKLGVQIPSEFLSDIRQQFIRSYGQSF--SQNSPTATYD------------------PFIRVLEERMKY-YSNPKS-NKMNLVMDQVSEAKGALTDAIEK 147          
The following BLAST results are available for this feature:
BLAST of FC929974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
VA712_ARATH7.400e-1831.79Vesicle-associated membrane protein 712 OS=Arabido... [more]
VA714_ARATH1.823e-1629.31Vesicle-associated membrane protein 714 OS=Arabido... [more]
VAMP7_MOUSE6.926e-1628.66Vesicle-associated membrane protein 7 OS=Mus muscu... [more]
VAMP7_RAT9.046e-1628.05Vesicle-associated membrane protein 7 OS=Rattus no... [more]
VAMP7_HUMAN2.015e-1528.05Vesicle-associated membrane protein 7 OS=Homo sapi... [more]
VAMP7_CHICK2.015e-1527.44Vesicle-associated membrane protein 7 OS=Gallus ga... [more]
VAMP7_BOVIN2.015e-1528.05Vesicle-associated membrane protein 7 OS=Bos tauru... [more]
VAMP7_PONAB7.658e-1527.44Vesicle-associated membrane protein 7 OS=Pongo abe... [more]
VAM7A_DICDI1.352e-1128.24Vesicle-associated membrane protein 7A OS=Dictyost... [more]

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Properties
Property NameValue
Genbank descriptionC34002D10EF PostHarvC1 Citrus clementina cDNA clone C34002D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929974 ID=FC929974; Name=FC929974; organism=Citrus clementina; type=EST; length=720bp
ACCACGACTTAACCCCAAAATAAAAAAAGCACACACAAGACGTTTAAACA
GTTAACCCCCGCGGAGTCTTCGACTTCAACTCTAAGCAAACAATCAACCG
TCTCCAGATTCTCTCTCTTTGTTCCTCGATTCGAAATTCATCCGGCGGCT
TTCTTTTCCGGAATTGAGAAATTGGAAAGAAATGAATCAGAAAGGGTTGA
TTTACAGCTTTGTTTCGAAAGGCACTGTCGTTTTAGCCGAGCACACGTCG
TATTCCGGAAATTTCAGTACCATTGCCATTCAATGTTTACAGAAATTGCC
TGCGAGTAGTAGCAAGTACACGTATTCATGCGATGGCCACACTTTTAACT
TCCTCCTCGACTCTGGATTCGTATTTCTGGTTGTTGCTGATGAATCGGTT
GGGAGAAGTGTGCCGTTTGTTTTTCTCGAACGAGTCAAGGATGATTTTAA
ACAGCGGTATGGGGCGAGTATTCAGAATGAGGAATCACACCCCCTTGCTG
ATGATGATGAGGATGATGATTTGTTTGAAGATCGATTTAGCATTGCCTAT
AATCTTGACAGAGAATTTGGGCCAAGGCTTAAGGAGCACATGCAGTATTG
TATGAGCCACCCTGAGGAGATGAGCAAGCTTTCCAAATTAAAGGCTCAAA
TAACTGAGGTCAAGGGGATTATGATGGACAATATTGAGAGGTTTTGGATC
GTGGGGAGAGGATGAGCTAC
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