FC929978
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC929978 vs. ExPASy Swiss-Prot
Match: RS4_META3 (30S ribosomal protein S4P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps4p PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.492e-20 Identity = 57/158 (36.08%), Postives = 85/158 (53.80%), Query Frame = 2 Query: 83 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 556 R KT+ P P+ ER+ E L +YGL K+E+W+++ L R AR L++ + E L ++RYG L + LD VL+L +E+ LERRLQTLVF+ G+A + AR I HI V + +N PS++V + + I + SP Sbjct: 5 RRLSKTYDTPNHPWIGERIKQERELSNKYGLSNKKEIWKMETRLRTFRRQARKLISDTSAQGEK--EAVQLFGILNRYGILLKEDATLDDVLSLNLESILERRLQTLVFRKGLANTPKQARQFIVHGHIAVNGKKINAPSYLVPLVEEDAISYMPNSP 160
BLAST of FC929978 vs. ExPASy Swiss-Prot
Match: RS4_NITMS (30S ribosomal protein S4P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps4p PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.561e-20 Identity = 59/150 (39.33%), Postives = 86/150 (57.33%), Query Frame = 2 Query: 95 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFS 544 + ++KP+RP E EL+ +G +GLR KRELW+ LSR+R+ AR LL L + R + L++ + R G L S LD VL LT + L RRLQT+V K K+ + AR + HI +G + V+IPS+ V V+ + I F+ Sbjct: 9 RVWRKPKRPLNYELKMEELKTLGTFGLRTKRELWKAHTELSRVRHQARSLLAL--RQEVRAEKEPILMKSLARIG-LVSSDATLDDVLNLTANDLLSRRLQTIVTKKLGFKTPYQARQAVIHGHIMIGERKVDIPSYTVTVEEENSIHFA 155
BLAST of FC929978 vs. ExPASy Swiss-Prot
Match: RS4_NANEQ (30S ribosomal protein S4P OS=Nanoarchaeum equitans GN=rps4p PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.561e-20 Identity = 59/154 (38.31%), Postives = 90/154 (58.44%), Query Frame = 2 Query: 95 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 556 + ++ P P++K+RL E RL+ EYGL+ KRELW + + R AR L E E L ++ + G L E+ +LD VL LTV++ LERRLQT++ + G+AK++ AR I HI V ++V+ PS++V+ + + IEF SP Sbjct: 6 RKWEGPSHPWQKQRLIIEKRLMKEYGLKNKRELWIAETIARKWRAYARYLNAKQAAGQDISEEKERFLTKLKKLGVLSENA-ELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVHGHIMVNGEVVDAPSYLVKKEEEDKIEFVPFSP 158
BLAST of FC929978 vs. ExPASy Swiss-Prot
Match: RS4_METBU (30S ribosomal protein S4P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps4p PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.561e-20 Identity = 57/157 (36.31%), Postives = 88/157 (56.05%), Query Frame = 2 Query: 95 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNP---RRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 556 K++ P+ P++ ER+ +E+ LV +YGLR KRELW+ L R R AR LL ++ E + LL ++ R+ L+ N +D VL L E LERRLQT V + G+A++ AR I HI + + V +P +V + + ++E+ TSP Sbjct: 9 KSYDTPQHPWQAERMASEVELVKKYGLRNKRELWKSLSVLRRFRGDARRLLAESAESDLIGHSKTEADQLLTKLIRFSILKSDSN-IDDVLGLQTEAILERRLQTQVHRLGLARTARQARQFITHGHIAIDGKRVTVPGMMVTREQEMNVEYYGTSP 164
BLAST of FC929978 vs. ExPASy Swiss-Prot
Match: RS4_METAC (30S ribosomal protein S4P OS=Methanosarcina acetivorans GN=rps4p PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.561e-20 Identity = 55/160 (34.38%), Postives = 88/160 (55.00%), Query Frame = 2 Query: 95 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEG------EALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 556 K+++ P+ P+++ R+ E++LV YGLR K+E+W+ L R+ AR LL EG E +L ++ RYG ++ N +D +L+L EN LERRLQT V + G+A+++ AR I HI + + IP +V + + HI + SP Sbjct: 9 KSYETPKHPWQEARMATEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAHVASGQEGGLEGHYRTQSEEILSKLIRYGIIKSDAN-IDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITHGHIAINGRKATIPGMLVSKEDEMHIGYYGNSP 167
BLAST of FC929978 vs. ExPASy Swiss-Prot
Match: RS4_HALSA (30S ribosomal protein S4P OS=Halobacterium salinarium GN=rps4p PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 5.957e-20 Identity = 58/153 (37.91%), Postives = 81/153 (52.94%), Query Frame = 2 Query: 95 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTS 553 K ++ P PY+ ER+ E L+ YGL+ K ELWR Q L R AR LL GE + R+ R G L E + +LD VL+L V + LERRLQT+V++ G+A ++ AR + H+ V V PS+ V V + + F TS Sbjct: 9 KFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL-----GQTGTVSGEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHGHVTVDGSRVTEPSYTVPVSEENTLAFDETS 155
BLAST of FC929978 vs. ExPASy Swiss-Prot
Match: RS4_HALS3 (30S ribosomal protein S4P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps4p PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 5.957e-20 Identity = 58/153 (37.91%), Postives = 81/153 (52.94%), Query Frame = 2 Query: 95 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTS 553 K ++ P PY+ ER+ E L+ YGL+ K ELWR Q L R AR LL GE + R+ R G L E + +LD VL+L V + LERRLQT+V++ G+A ++ AR + H+ V V PS+ V V + + F TS Sbjct: 9 KFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL-----GQTGTVSGEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHGHVTVDGSRVTEPSYTVPVSEENTLAFDETS 155
BLAST of FC929978 vs. ExPASy Swiss-Prot
Match: RS4_CENSY (30S ribosomal protein S4P OS=Cenarchaeum symbiosum GN=rps4p PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.327e-19 Identity = 59/155 (38.06%), Postives = 89/155 (57.42%), Query Frame = 2 Query: 95 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 559 + ++KP+RP+ + ELR +G +GLR KRELW+ LSR+RN AR LL L ++ R + LLR + R G + + + LD VL L V + L RRLQT+V K + + AR + HI + ++V IPS+ V V+ + I+ + S F Sbjct: 9 RMWRKPKRPFNYDLKMEELRTLGTFGLRTKRELWKAHTELSRVRNQARSLLALGQEVRER--KEPVLLRSLARIGLVGKDAS-LDDVLNLQVNDLLGRRLQTIVMKKLGFSTPYQARQAVVHGHITISDRVVTIPSYTVYVEEEGDIKLTGGSAF 160
BLAST of FC929978 vs. ExPASy Swiss-Prot
Match: RS4_HALWD (30S ribosomal protein S4P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps4p PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.601e-19 Identity = 60/156 (38.46%), Postives = 81/156 (51.92%), Query Frame = 2 Query: 95 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFE--GEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 556 K ++ P PY+ ER+ E L+G YGL+ K ELWR Q L R AR L+ + + + E GE L R+ RYG L + + + VL L V + LERRLQT+V++ G+A + AR I HI V V PS +V I F SP Sbjct: 8 KRYETPNHPYQGERIAQEGDLLGRYGLKNKEELWRTQSELREYRREARRLIG-EAQGDVSVAEALGEEFLDRLRRYGIL-SADDDISKVLGLDVSDILERRLQTIVYRQGLASTPKQARQFIVHEHITVNGARVTRPSKMVEETEANAIAFDENSP 161
BLAST of FC929978 vs. ExPASy Swiss-Prot
Match: RS4_HALMA (30S ribosomal protein S4P OS=Haloarcula marismortui GN=rps4p PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.601e-19 Identity = 58/149 (38.93%), Postives = 79/149 (53.02%), Query Frame = 2 Query: 95 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEF 541 K ++ P P++ ER+ E L+G YGL+ K ELWR Q L R AR LL ++ E E L R+ RYG L E Q++LD VL+L V + LERRLQT+V++ G A + AR I HI + V P V + + F Sbjct: 8 KFYETPNHPFQGERIADEANLIGRYGLKNKEELWRAQSELRGYRREARKLLGSAGEHET---ESEEFLARLKRYGILNE-QDQLDDVLSLDVTDVLERRLQTVVYRKGYANTPEQARQFIVHGHIVLDDARVTRPGMTVETAVESSVGF 152 The following BLAST results are available for this feature:
BLAST of FC929978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
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Sequences
The
following sequences are available for this feature:
EST sequence >FC929978 ID=FC929978; Name=FC929978; organism=Citrus clementina; type=EST; length=713bpback to top |