FC929999

Overview
NameFC929999
Unique NameFC929999
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR_CYAP4 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dxr PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.796e-17
Identity = 40/75 (53.33%), Postives = 61/75 (81.33%), Query Frame = 2
Query:  413 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEESP 637
            K I++LGSTGSIGTQTLDIVA++ D+FR+V LAAG ++  L  Q+++F+PQ+VA+ +E  LD++K A+A+++  P
Sbjct:    2 KAITLLGSTGSIGTQTLDIVAQYPDQFRIVGLAAGRSLDKLIPQIRQFRPQIVALADEQQLDDLKAAIADLDPQP 76          
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR_CYAP8 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Cyanothece sp. (strain PCC 8801) GN=dxr PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17
Identity = 42/75 (56.00%), Postives = 61/75 (81.33%), Query Frame = 2
Query:  413 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEESP 637
            K I++LGSTGSIGTQTLDIV ++ D+F+VV LA  +N  LLA Q+K+F+P++VA+  ES L+ IK+A+A+++ SP
Sbjct:    2 KKITILGSTGSIGTQTLDIVQQYPDQFQVVGLATRNNGELLAQQIKQFRPEIVAICQESQLNTIKDAIASLDYSP 76          
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR_SYNJA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain JA-3-3Ab) GN=dxr PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.069e-16
Identity = 42/78 (53.85%), Postives = 58/78 (74.36%), Query Frame = 2
Query:  419 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEESPRFWPG 652
            I++LGSTGSIGTQTLD+VA++ ++FRVV L + SN+TLLA+QV RF+PQ+VA+  E LL E++  L  +   P    G
Sbjct:    4 ITLLGSTGSIGTQTLDLVAQYPERFRVVGLTSYSNVTLLAEQVWRFRPQIVAIGREELLPELRSLLTGMRPLPELVAG 81          
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR_SYNP6 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=dxr PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.823e-16
Identity = 37/80 (46.25%), Postives = 63/80 (78.75%), Query Frame = 2
Query:  413 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEESPRFWPG 652
            K +++LGSTGSIGTQTLDI+ ++ D+FR+V LAAG N+ LL++Q++R +P++VA+++ + L E++ A+A+++  P    G
Sbjct:    2 KAVTLLGSTGSIGTQTLDILEQYPDRFRLVGLAAGRNVALLSEQIRRHRPEIVAIQDAAQLSELQAAIADLDNPPLILTG 81          
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR_SYNE7 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus elongatus (strain PCC 7942) GN=dxr PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.823e-16
Identity = 37/80 (46.25%), Postives = 63/80 (78.75%), Query Frame = 2
Query:  413 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEESPRFWPG 652
            K +++LGSTGSIGTQTLDI+ ++ D+FR+V LAAG N+ LL++Q++R +P++VA+++ + L E++ A+A+++  P    G
Sbjct:    2 KAVTLLGSTGSIGTQTLDILEQYPDRFRLVGLAAGRNVALLSEQIRRHRPEIVAIQDAAQLSELQAAIADLDNPPLILTG 81          
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR_THEEB (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Thermosynechococcus elongatus (strain BP-1) GN=dxr PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.215e-16
Identity = 39/80 (48.75%), Postives = 61/80 (76.25%), Query Frame = 2
Query:  413 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEESPRFWPG 652
            K +++LGSTGSIGTQTLDIVA++ D+FRVV LAAG N+  L  Q+++F+P++V++ +   L E++ ALA++ + P+   G
Sbjct:   20 KALNLLGSTGSIGTQTLDIVAQYPDRFRVVGLAAGRNLERLIPQIRQFQPEIVSIADPEQLPELEAALADLPQKPQLVAG 99          

HSP 2 Score: 21.557 bits (44), Expect = 2.215e-16
Identity = 7/18 (38.89%), Postives = 13/18 (72.22%), Query Frame = 1
Query:  628 RKPEILAGEQGVIEAARH 681
            +KP+++AGE G+   A +
Sbjct:   92 QKPQLVAGEAGIAAVAAY 109          
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR_SYNS9 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain CC9902) GN=dxr PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.380e-16
Identity = 43/76 (56.58%), Postives = 59/76 (77.63%), Query Frame = 2
Query:  413 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEESPR 640
            K ISVLGSTGSIGTQTL IV +  D+FRVVAL AG N+ LL +Q++R +P++VA+ +E+LL E+K+ L  ++ S R
Sbjct:    2 KAISVLGSTGSIGTQTLQIVDDFPDQFRVVALTAGRNLALLVEQIQRHQPELVALADEALLPELKQRLEALDPSDR 77          
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR_SYNJB (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. GN=dxr PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.109e-16
Identity = 40/78 (51.28%), Postives = 58/78 (74.36%), Query Frame = 2
Query:  419 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEESPRFWPG 652
            I++LGSTGSIGTQTLD+VA++ ++F+VV L + SN+ LLA+QV+RF+PQ+VA+  E LL E++  L  +   P    G
Sbjct:    4 ITLLGSTGSIGTQTLDLVAQYPERFQVVGLTSYSNVALLAEQVRRFRPQMVAIGREELLPELRSLLTGIRPLPELVAG 81          
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR_PROM5 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus (strain MIT 9515) GN=dxr PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16
Identity = 45/86 (52.33%), Postives = 64/86 (74.42%), Query Frame = 2
Query:  413 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVE-ESPRFWPGNRESL 667
            K I+VLGSTGSIGTQTL+IV E  +KF+VVAL+AG NI LL +QV + KP+V+A+ +E+LL ++K  + N+   +P    G RE++
Sbjct:    2 KYITVLGSTGSIGTQTLEIVRELPNKFKVVALSAGRNIDLLTEQVSQHKPEVIAIDDENLLTDLKNNINNLGISNPPIVLGGREAI 87          
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR_PROMP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=dxr PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15
Identity = 43/82 (52.44%), Postives = 62/82 (75.61%), Query Frame = 2
Query:  425 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVE-ESPRFWPGNRESL 667
            +LGSTGSIGTQTL+IV+E  DKF+VVAL+AG NI LL +QV + KP+V+A+ +E+LL ++K  + N+   +P    G RE++
Sbjct:    1 MLGSTGSIGTQTLEIVSELPDKFKVVALSAGRNIDLLTEQVSQHKPEVIAIEDENLLTDLKNNINNLGISNPPIVLGGREAI 82          
The following BLAST results are available for this feature:
BLAST of FC929999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
DXR_CYAP44.796e-1753.331-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CYAP88.182e-1756.001-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNJA1.069e-1653.851-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNP61.823e-1646.251-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNE71.823e-1646.251-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_THEEB2.215e-1648.751-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNS92.380e-1656.581-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNJB3.109e-1651.281-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROM59.046e-1652.331-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROMP1.181e-1552.441-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC34002F11EF PostHarvC1 Citrus clementina cDNA clone C34002F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929999 ID=FC929999; Name=FC929999; organism=Citrus clementina; type=EST; length=720bp
GAATGCTGTTGATGATGATGAATTTTGGTCAACTTCGTACACCGCCACGA
ATTACATTTTAAAGTCACTTTCTCCTCTTCTTCTTTCATTATTTCTTTAT
TGCTGCTCCGAACTGAAACTTGTGTTGAGAGAGAGAGAGAGAGAGATAAA
AAGAGGAGAAAAAAAAAAGGTTGTTAAAGCTTTGATGGCATTGAATTTGC
AGTCCCCAGCTGAAATCAAGGCTCTCTCTTTCTTGGAGACAACCAGGTCA
AATCATCGCCTCCCCAAGCTCTCAGGTGGGTTTCCTTTGAAGAGGAAGGA
TAATGCAACGGCGACGTTTGGTAGAATAGTTCAATGTTCTGCTCAGGGAC
CTCCTCCTGCATGGCCAGGCCGAGCTGTTACAGAGACTTTTCGTAAGACT
TGGGATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAACTGGTTCTATTGG
AACTCAGACGTTGGACATAGTTGCGGAGCATGAAGATAAATTCAGAGTTG
TGGCACTGGCAGCTGGTTCAAATATAACTCTTCTTGCTGATCAGGTGAAG
AGATTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTCATTACTTGATGA
AATCAAGGAGGCTTTGGCTAATGTTGAAGAAAGCCCGAGATTTTGGCCGG
GGAACAGGGAGTCATTGAGGCTGCCCGACACCAGATGCTGTCACGTGGTG
ACAGTATATCGGTTGTGCAG
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