FC929999

Overview
NameFC929999
Unique NameFC929999
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR_PELPD (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Pelobacter propionicus (strain DSM 2379) GN=dxr PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.068e-12
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 2
Query:  413 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV 577
            K +S+LGSTGSIG  TL+IVA H D+FRV AL AG N+ LLA Q+++F P++ AV
Sbjct:    2 KQLSILGSTGSIGVSTLEIVAAHPDRFRVSALTAGKNLELLARQIRQFSPRIAAV 56          
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR1_BACCR (1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=dxr1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.068e-12
Identity = 32/69 (46.38%), Postives = 49/69 (71.01%), Query Frame = 2
Query:  413 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALA 619
            K IS+LGSTGSIGT  LD+V+ H + F++V L A  NI LL  Q+K F+P++V+V  + L D+++  ++
Sbjct:    3 KYISILGSTGSIGTSALDVVSAHPEHFKIVGLTANYNIDLLEQQIKTFQPRIVSVATKDLADKLRTRIS 71          
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR_ALKOO (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Alkaliphilus oremlandii (strain OhILAs) GN=dxr PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.924e-12
Identity = 32/55 (58.18%), Postives = 43/55 (78.18%), Query Frame = 2
Query:  413 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV 577
            K IS+LGSTGSIGTQTLD+V  H +KF++VAL+A  NI  + +Q+  F P++VAV
Sbjct:    2 KNISILGSTGSIGTQTLDVVRNHPEKFKIVALSASGNIDAIENQIHEFHPEIVAV 56          
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR_THEYD (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=dxr PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.035e-11
Identity = 31/72 (43.06%), Postives = 51/72 (70.83%), Query Frame = 2
Query:  413 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVE 628
            K + +LGSTGSIG   L+++ +  DKF+V+ LAA S++ +L +Q+K F PQ VAV ++   DE+++ + N+E
Sbjct:    2 KKVVILGSTGSIGKNALEVIRKFPDKFKVLGLAAKSSVNILEEQIKEFNPQYVAVFDKKACDELRKKVKNLE 73          
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR_DESHD (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=dxr PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.035e-11
Identity = 32/72 (44.44%), Postives = 51/72 (70.83%), Query Frame = 2
Query:  413 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVE 628
            K +++LGSTGSIGTQTLDIV ++ ++  V ALAAG N+  +  Q + FKPQ++ +  E    E+K+ +A+++
Sbjct:    2 KRLTILGSTGSIGTQTLDIVRQNPEQLEVFALAAGKNVQEIELQAREFKPQIIGLMEEKAARELKQRVADLD 73          
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR1_BACHK (1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 OS=Bacillus thuringiensis subsp. konkukian GN=dxr1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.035e-11
Identity = 32/69 (46.38%), Postives = 48/69 (69.57%), Query Frame = 2
Query:  413 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALA 619
            K IS+LGSTGSIGT  LD+V+ H + F++V L A  NI LL  Q+K F+P++V+V  + L D ++  ++
Sbjct:    3 KYISILGSTGSIGTSALDVVSAHPEHFKIVGLTANYNIELLEQQIKTFQPRIVSVATKELADTLRTRIS 71          
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR1_BACAN (1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 OS=Bacillus anthracis GN=dxr1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.035e-11
Identity = 32/69 (46.38%), Postives = 48/69 (69.57%), Query Frame = 2
Query:  413 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALA 619
            K IS+LGSTGSIGT  LD+V+ H + F++V L A  NI LL  Q+K F+P++V+V  + L D ++  ++
Sbjct:    3 KYISILGSTGSIGTSALDVVSAHPEHFKIVGLTANYNIELLEQQIKTFQPRIVSVATKELADTLRTRIS 71          
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR_CHLL2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=dxr PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.352e-11
Identity = 31/68 (45.59%), Postives = 48/68 (70.59%), Query Frame = 2
Query:  413 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEAL 616
            K +S+LGSTGSIG  TLD+V +H  KF +  LA G ++ LL +Q+  F+P VV+VR+ +  D++++ L
Sbjct:    2 KALSILGSTGSIGLSTLDVVRQHPGKFTITGLAEGHDVGLLNEQINEFRPDVVSVRDAASADQLRKLL 69          
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR1_BACCZ (1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 OS=Bacillus cereus (strain ZK / E33L) GN=dxr1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.352e-11
Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 2
Query:  413 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIK 607
            K IS+LGSTGSIGT  LD+V+ H + F++V L A  NI LL  Q+K F+P++V+V  + L D ++
Sbjct:    3 KYISILGSTGSIGTSALDVVSAHPEHFKIVGLTANYNIELLEQQIKMFQPRIVSVATKDLADTLR 67          
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR_CHLTE (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Chlorobium tepidum GN=dxr PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.709e-11
Identity = 30/70 (42.86%), Postives = 48/70 (68.57%), Query Frame = 2
Query:  413 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALAN 622
            K +S+LGSTGSIG  TLD+V  H ++F + ALA G ++ +L  Q+  F+P +V+VR+E+  + +K  L +
Sbjct:    2 KSLSILGSTGSIGLSTLDVVRRHPERFSIAALAEGHDVEMLLKQIDEFRPSLVSVRDEASRERLKGMLGD 71          

HSP 2 Score: 21.557 bits (44), Expect = 1.709e-11
Identity = 9/15 (60.00%), Postives = 10/15 (66.67%), Query Frame = 1
Query:  631 KPEILAGEQGVIEAA 675
            KPEIL G +G  E A
Sbjct:   73 KPEILCGLEGAAEVA 87          
The following BLAST results are available for this feature:
BLAST of FC929999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
DXR_PELPD6.068e-1260.001-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR1_BACCR6.068e-1246.381-deoxy-D-xylulose 5-phosphate reductoisomerase 1 ... [more]
DXR_ALKOO7.924e-1258.181-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_THEYD1.035e-1143.061-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_DESHD1.035e-1144.441-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR1_BACHK1.035e-1146.381-deoxy-D-xylulose 5-phosphate reductoisomerase 1 ... [more]
DXR1_BACAN1.035e-1146.381-deoxy-D-xylulose 5-phosphate reductoisomerase 1 ... [more]
DXR_CHLL21.352e-1145.591-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR1_BACCZ1.352e-1149.231-deoxy-D-xylulose 5-phosphate reductoisomerase 1 ... [more]
DXR_CHLTE1.709e-1142.861-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC34002F11EF PostHarvC1 Citrus clementina cDNA clone C34002F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929999 ID=FC929999; Name=FC929999; organism=Citrus clementina; type=EST; length=720bp
GAATGCTGTTGATGATGATGAATTTTGGTCAACTTCGTACACCGCCACGA
ATTACATTTTAAAGTCACTTTCTCCTCTTCTTCTTTCATTATTTCTTTAT
TGCTGCTCCGAACTGAAACTTGTGTTGAGAGAGAGAGAGAGAGAGATAAA
AAGAGGAGAAAAAAAAAAGGTTGTTAAAGCTTTGATGGCATTGAATTTGC
AGTCCCCAGCTGAAATCAAGGCTCTCTCTTTCTTGGAGACAACCAGGTCA
AATCATCGCCTCCCCAAGCTCTCAGGTGGGTTTCCTTTGAAGAGGAAGGA
TAATGCAACGGCGACGTTTGGTAGAATAGTTCAATGTTCTGCTCAGGGAC
CTCCTCCTGCATGGCCAGGCCGAGCTGTTACAGAGACTTTTCGTAAGACT
TGGGATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAACTGGTTCTATTGG
AACTCAGACGTTGGACATAGTTGCGGAGCATGAAGATAAATTCAGAGTTG
TGGCACTGGCAGCTGGTTCAAATATAACTCTTCTTGCTGATCAGGTGAAG
AGATTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTCATTACTTGATGA
AATCAAGGAGGCTTTGGCTAATGTTGAAGAAAGCCCGAGATTTTGGCCGG
GGAACAGGGAGTCATTGAGGCTGCCCGACACCAGATGCTGTCACGTGGTG
ACAGTATATCGGTTGTGCAG
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