FC929999

Overview
NameFC929999
Unique NameFC929999
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR_SACD2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=dxr PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.765e-11
Identity = 34/69 (49.28%), Postives = 47/69 (68.12%), Query Frame = 2
Query:  419 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANV 625
            I VLGSTGSIG  TLD++A H DKF V AL A S+I LL +Q  +F PQ   +R+E+L   +K+ + ++
Sbjct:    4 ICVLGSTGSIGISTLDVLASHPDKFSVYALTANSSIDLLVEQCLKFSPQYAVIRDEALYLPLKQRIESL 72          
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR_PROMH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Proteus mirabilis (strain HI4320) GN=dxr PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.765e-11
Identity = 32/70 (45.71%), Postives = 48/70 (68.57%), Query Frame = 2
Query:  413 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALAN 622
            K I++LGSTGSIGT TL ++  + D+F+V+AL AG N T +A Q + F+P+   + +E    E+K+ LAN
Sbjct:    2 KQITILGSTGSIGTSTLSVIENNPDEFQVLALVAGKNATKMAQQCRAFQPKYAVMSDEKSAGELKQLLAN 71          
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR_DESAP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Desulforudis audaxviator (strain MP104C) GN=dxr PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.765e-11
Identity = 39/81 (48.15%), Postives = 49/81 (60.49%), Query Frame = 2
Query:  410 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEESPRFWPG 652
            PK I+VLGSTGSIG Q LD+V  H +KF+VV LAAG N  LLA+Q   F P VV+V +    + ++  L    E     PG
Sbjct:    2 PKRIAVLGSTGSIGRQALDVVRSHPEKFKVVGLAAGRNWELLAEQAAEFAPGVVSVWSGDDAERVRVRLGGGVEVHAGEPG 82          
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR_CLOPH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=dxr PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.765e-11
Identity = 37/72 (51.39%), Postives = 54/72 (75.00%), Query Frame = 2
Query:  413 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVE 628
            K ISVLGSTGSIGTQTL++V  ++D  +V ALAA SNITLL +Q++ F P++V V +     E+K+ ++++E
Sbjct:    2 KIISVLGSTGSIGTQTLEVVRNNKD-LKVSALAASSNITLLEEQIREFHPKLVCVYDREKALELKKRVSDLE 72          
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR_PROMA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus GN=dxr PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 36/77 (46.75%), Postives = 54/77 (70.13%), Query Frame = 2
Query:  425 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANV--EESPRFWP 649
            +LGSTGSIGTQTL+I  E  ++F+VVAL AG N+ LL  Q++  +P+VVA+  + +L E++E L ++  +E P   P
Sbjct:    1 MLGSTGSIGTQTLEIAKECPEQFKVVALTAGRNLDLLIKQIQEHQPEVVALARKDILPELQERLNSLTGKERPNALP 77          
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR_BACFR (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacteroides fragilis GN=dxr PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 31/71 (43.66%), Postives = 48/71 (67.61%), Query Frame = 2
Query:  413 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANV 625
            K I++LGSTGSIGTQ L ++ EH + + V AL A + + LL  Q ++F P+ V + NE    ++KEAL+++
Sbjct:    7 KQIAILGSTGSIGTQALQVIEEHPELYEVYALTANNKVDLLIAQARKFMPEAVVIANEEKYAQLKEALSDL 77          
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR_BACFN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=dxr PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 31/71 (43.66%), Postives = 48/71 (67.61%), Query Frame = 2
Query:  413 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANV 625
            K I++LGSTGSIGTQ L ++ EH + + V AL A + + LL  Q ++F P+ V + NE    ++KEAL+++
Sbjct:    7 KQIAILGSTGSIGTQALQVIEEHPELYEVYALTANNKVDLLIAQARKFMPEAVVIANEEKYAQLKEALSDL 77          
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR_LAWIP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=dxr PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.875e-11
Identity = 34/69 (49.28%), Postives = 48/69 (69.57%), Query Frame = 2
Query:  410 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEAL 616
            P+ IS+LGSTGSIGT  LD++  H++ F +VAL  G N+ LLA Q  ++KP  +AV++E+     KEAL
Sbjct:   18 PRTISILGSTGSIGTNALDVIKSHKELFHIVALGGGKNVQLLAKQAIQWKPDYLAVQDET----SKEAL 82          

HSP 2 Score: 20.4014 bits (41), Expect = 2.875e-11
Identity = 7/15 (46.67%), Postives = 10/15 (66.67%), Query Frame = 1
Query:  631 KPEILAGEQGVIEAA 675
            KP I  G+QG ++ A
Sbjct:   91 KPSIFVGQQGYVKLA 105          
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR_DESHY (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Desulfitobacterium hafniense (strain Y51) GN=dxr PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11
Identity = 31/72 (43.06%), Postives = 51/72 (70.83%), Query Frame = 2
Query:  413 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVE 628
            K +++LGSTGSIGTQTLDIV ++ ++  V ALAAG N+  +  Q + FKP+++ +  E    E+K+ +A+++
Sbjct:    2 KRLTILGSTGSIGTQTLDIVRQNPEQLEVFALAAGKNVQEIELQAREFKPRIIGLMEEKAARELKQRVADLD 73          
BLAST of FC929999 vs. ExPASy Swiss-Prot
Match: DXR_CHLCH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Chlorobium chlorochromatii (strain CaD3) GN=dxr PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11
Identity = 31/68 (45.59%), Postives = 47/68 (69.12%), Query Frame = 2
Query:  413 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEAL 616
            + +S+LGSTGSIG  TLD+V +H D+F +V LA G ++  LA Q++ FKP  V+VR+     +++E L
Sbjct:    2 RALSILGSTGSIGLSTLDVVRQHRDRFTIVGLAEGHDVAALAAQIEEFKPLAVSVRDAESAKKLQELL 69          
The following BLAST results are available for this feature:
BLAST of FC929999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
DXR_SACD21.765e-1149.281-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROMH1.765e-1145.711-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_DESAP1.765e-1148.151-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOPH1.765e-1151.391-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROMA2.306e-1146.751-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACFR2.306e-1143.661-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACFN2.306e-1143.661-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_LAWIP2.875e-1149.281-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_DESHY3.011e-1143.061-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CHLCH3.011e-1145.591-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC34002F11EF PostHarvC1 Citrus clementina cDNA clone C34002F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929999 ID=FC929999; Name=FC929999; organism=Citrus clementina; type=EST; length=720bp
GAATGCTGTTGATGATGATGAATTTTGGTCAACTTCGTACACCGCCACGA
ATTACATTTTAAAGTCACTTTCTCCTCTTCTTCTTTCATTATTTCTTTAT
TGCTGCTCCGAACTGAAACTTGTGTTGAGAGAGAGAGAGAGAGAGATAAA
AAGAGGAGAAAAAAAAAAGGTTGTTAAAGCTTTGATGGCATTGAATTTGC
AGTCCCCAGCTGAAATCAAGGCTCTCTCTTTCTTGGAGACAACCAGGTCA
AATCATCGCCTCCCCAAGCTCTCAGGTGGGTTTCCTTTGAAGAGGAAGGA
TAATGCAACGGCGACGTTTGGTAGAATAGTTCAATGTTCTGCTCAGGGAC
CTCCTCCTGCATGGCCAGGCCGAGCTGTTACAGAGACTTTTCGTAAGACT
TGGGATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAACTGGTTCTATTGG
AACTCAGACGTTGGACATAGTTGCGGAGCATGAAGATAAATTCAGAGTTG
TGGCACTGGCAGCTGGTTCAAATATAACTCTTCTTGCTGATCAGGTGAAG
AGATTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTCATTACTTGATGA
AATCAAGGAGGCTTTGGCTAATGTTGAAGAAAGCCCGAGATTTTGGCCGG
GGAACAGGGAGTCATTGAGGCTGCCCGACACCAGATGCTGTCACGTGGTG
ACAGTATATCGGTTGTGCAG
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