FC930004

Overview
NameFC930004
Unique NameFC930004
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length760
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930004 vs. ExPASy Swiss-Prot
Match: PP234_ARATH (Pentatricopeptide repeat-containing protein At3g15590, mitochondrial OS=Arabidopsis thaliana GN=At3g15590 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.639e-13
Identity = 61/216 (28.24%), Postives = 104/216 (48.15%), Query Frame = 3
Query:  105 TKNIAKRSKKHLEEALYDRLFKKGGSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNK-TVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLL-NCYCKELMTXXXXXXXXXXXXXXXGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDG 746
            +K+  K +KK  +  LY+ +     +  SV+  L +++K  K + + EV   +  LR RK Y   L+L E +      + T ++ A  LDLVAKV  +  AE +  D+PE+S+  + Y +LL NC  K  +                  S    N L+ LY+     +KI  ++  M+  +I P   TY+  + +     DI+G E+++E +K +G
Sbjct:  132 SKDGGKPTKKRGQSELYESIV----AYKSVKHVLEKWVKEGKDLSQAEVTLAIHNLRKRKSYAMCLQLWEWLGANTQFEFTEANYASQLDLVAKVHSLQKAEIFLKDIPESSRGEVVYRTLLANCVLKHHVNKAEDIFNKMKELKFP-TSVFACNQLLLLYSMHDR-KKISDVLLLMERENIKPSRATYHFLINSKGLAGDITGMEKIVETIKEEG 341          
BLAST of FC930004 vs. ExPASy Swiss-Prot
Match: PP135_ARATH (Pentatricopeptide repeat-containing protein At1g80270, mitochondrial OS=Arabidopsis thaliana GN=At1g80270 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.350e-12
Identity = 54/215 (25.12%), Postives = 104/215 (48.37%), Query Frame = 3
Query:  111 NIAKRSKKHLEEALYDRLFKKGGSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENME-KRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLL-NCYCKELMTXXXXXXXXXXXXXXXGFSSMPFN-SLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDG 746
            ++++++ +  +  L+  +    G  +S+   L+++++    + + E+   + +LR R++Y  AL++SE +E  + +  T  D A  LDL  K++G++  E     +P++ K  + Y +LL NC     +                GF    F    M L  K    +KI  ++  M+  +I P   TY + +    A NDISG E+++E MK +G
Sbjct:  119 DVSRKTVEKKQSELFKTIVSAPG--LSIGSALDKWVEEGNEITRVEIAKAMLQLRRRRMYGRALQMSEWLEANKKIEMTERDYASRLDLTVKIRGLEKGEACMQKIPKSFKGEVLYRTLLANCVAAGNVKKSELVFNKMKDL---GFPLSGFTCDQMLLLHKRIDRKKIADVLLLMEKENIKPSLLTYKILIDVKGATNDISGMEQILETMKDEG 328          
BLAST of FC930004 vs. ExPASy Swiss-Prot
Match: PPR44_ARATH (Pentatricopeptide repeat-containing protein At1g15480, mitochondrial OS=Arabidopsis thaliana GN=At1g15480 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.749e-12
Identity = 47/190 (24.74%), Postives = 92/190 (48.42%), Query Frame = 3
Query:  180 SDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENM-EKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTXXXXXXXXXXXXXXXGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDG 746
            S +SV   L+++++  K   + E    + +LR R+++  AL+++E + E +       D A  LDL++KV+G    E Y   +PE+ +  L Y +LL  +                       S+   N ++ LY +    +KI  ++  ++  ++ P+  TY + +    + NDI+G E+++E MK +G
Sbjct:  138 SGLSVGSALDKWVEQGKDTNRKEFESAMLQLRKRRMFGRALQMTEWLDENKQFEMEERDYACRLDLISKVRGWYKGEAYIKTIPESFRGELVYRTLLANHVATSNVRTAEAVFNKMKDLGFPLSTFTCNQMLILYKRVDK-KKIADVLLLLEKENLKPNLNTYKILIDTKGSSNDITGMEQIVETMKSEG 326          
The following BLAST results are available for this feature:
BLAST of FC930004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PP234_ARATH4.639e-1328.24Pentatricopeptide repeat-containing protein At3g15... [more]
PP135_ARATH1.350e-1225.12Pentatricopeptide repeat-containing protein At1g80... [more]
PPR44_ARATH8.749e-1224.74Pentatricopeptide repeat-containing protein At1g15... [more]

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Properties
Property NameValue
Genbank descriptionC34002G04EF PostHarvC1 Citrus clementina cDNA clone C34002G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930004 ID=FC930004; Name=FC930004; organism=Citrus clementina; type=EST; length=760bp
GGAAGGAATGCGAAAACACAAAACGAGCAGAGCGGGGGGTTTAGATTTTA
GGGTTTAGAGAAAGCTAAAGAAGAAAAATGGCGATGCCGCAACGGTTTGG
GAGGACCAAGAACATAGCAAAGCGGTCGAAGAAGCACTTGGAAGAAGCGC
TTTACGACAGGCTATTCAAAAAAGGTGGCTCCGACGTTAGCGTTCGACAG
CAGCTGAACCAGTTTCTCAAGAGCAAAAAACGTGTCTTCAAATGGGAAGT
CGGCGACACTCTCAAGAAGCTTCGCGATCGCAAGCTCTATTACCCTGCCC
TCAAGTTATCAGAAAATATGGAAAAGAGGGGTATGAACAAGACAGTCAGT
GATCAAGCTATTCATCTTGATCTAGTTGCCAAAGTTCAAGGTATTGATGC
TGCAGAAAACTATTTTGTTGATCTTCCTGAAACATCAAAGAACCATCTTA
CATATGGTTCTCTTCTGAATTGCTACTGCAAGGAATTGATGACTGAAAAA
GCAGAAGCTCTCTTGGAGAAGATGAAGGAACTTAACCTTGGGTTTAGCTC
CATGCCTTTTAACAGCCTCATGACCCTTTATGCAAAGACTGGCCACCCAG
AAAAAATACCAGCCATTATACAAGAAATGAAGGCGTCGAGTATCATGCCA
GACTCATACACATACAATGTCTGGATGAGGGCTCTGGCTGCTGTCAATGA
TATTTCTGGGGCTGAGAGAGTCATTGAAGAGATGAAGAGGGATGGTCGGG
TTGCTGCTGA
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