FC930004
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930004 vs. ExPASy Swiss-Prot
Match: PP234_ARATH (Pentatricopeptide repeat-containing protein At3g15590, mitochondrial OS=Arabidopsis thaliana GN=At3g15590 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.639e-13 Identity = 61/216 (28.24%), Postives = 104/216 (48.15%), Query Frame = 3 Query: 105 TKNIAKRSKKHLEEALYDRLFKKGGSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNK-TVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLL-NCYCKELMTXXXXXXXXXXXXXXXGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDG 746 +K+ K +KK + LY+ + + SV+ L +++K K + + EV + LR RK Y L+L E + + T ++ A LDLVAKV + AE + D+PE+S+ + Y +LL NC K + S N L+ LY+ +KI ++ M+ +I P TY+ + + DI+G E+++E +K +G Sbjct: 132 SKDGGKPTKKRGQSELYESIV----AYKSVKHVLEKWVKEGKDLSQAEVTLAIHNLRKRKSYAMCLQLWEWLGANTQFEFTEANYASQLDLVAKVHSLQKAEIFLKDIPESSRGEVVYRTLLANCVLKHHVNKAEDIFNKMKELKFP-TSVFACNQLLLLYSMHDR-KKISDVLLLMERENIKPSRATYHFLINSKGLAGDITGMEKIVETIKEEG 341
BLAST of FC930004 vs. ExPASy Swiss-Prot
Match: PP135_ARATH (Pentatricopeptide repeat-containing protein At1g80270, mitochondrial OS=Arabidopsis thaliana GN=At1g80270 PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.350e-12 Identity = 54/215 (25.12%), Postives = 104/215 (48.37%), Query Frame = 3 Query: 111 NIAKRSKKHLEEALYDRLFKKGGSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENME-KRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLL-NCYCKELMTXXXXXXXXXXXXXXXGFSSMPFN-SLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDG 746 ++++++ + + L+ + G +S+ L+++++ + + E+ + +LR R++Y AL++SE +E + + T D A LDL K++G++ E +P++ K + Y +LL NC + GF F M L K +KI ++ M+ +I P TY + + A NDISG E+++E MK +G Sbjct: 119 DVSRKTVEKKQSELFKTIVSAPG--LSIGSALDKWVEEGNEITRVEIAKAMLQLRRRRMYGRALQMSEWLEANKKIEMTERDYASRLDLTVKIRGLEKGEACMQKIPKSFKGEVLYRTLLANCVAAGNVKKSELVFNKMKDL---GFPLSGFTCDQMLLLHKRIDRKKIADVLLLMEKENIKPSLLTYKILIDVKGATNDISGMEQILETMKDEG 328
BLAST of FC930004 vs. ExPASy Swiss-Prot
Match: PPR44_ARATH (Pentatricopeptide repeat-containing protein At1g15480, mitochondrial OS=Arabidopsis thaliana GN=At1g15480 PE=2 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 8.749e-12 Identity = 47/190 (24.74%), Postives = 92/190 (48.42%), Query Frame = 3 Query: 180 SDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENM-EKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTXXXXXXXXXXXXXXXGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDG 746 S +SV L+++++ K + E + +LR R+++ AL+++E + E + D A LDL++KV+G E Y +PE+ + L Y +LL + S+ N ++ LY + +KI ++ ++ ++ P+ TY + + + NDI+G E+++E MK +G Sbjct: 138 SGLSVGSALDKWVEQGKDTNRKEFESAMLQLRKRRMFGRALQMTEWLDENKQFEMEERDYACRLDLISKVRGWYKGEAYIKTIPESFRGELVYRTLLANHVATSNVRTAEAVFNKMKDLGFPLSTFTCNQMLILYKRVDK-KKIADVLLLLEKENLKPNLNTYKILIDTKGSSNDITGMEQIVETMKSEG 326 The following BLAST results are available for this feature:
BLAST of FC930004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 13
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930004 ID=FC930004; Name=FC930004; organism=Citrus clementina; type=EST; length=760bpback to top |