FC930009
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930009 vs. ExPASy Swiss-Prot
Match: COPE_BOVIN (Coatomer subunit epsilon OS=Bos taurus GN=COPE PE=1 SV=3) HSP 1 Score: 152.91 bits (385), Expect = 1.611e-36 Identity = 78/190 (41.05%), Postives = 122/190 (64.21%), Query Frame = 1 Query: 100 DHLFNLRNNFYLGAYQAAINNSDLTN-LPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQ 666 D LF+++N FY+G+YQ IN + P+ VERD +YR+Y+A Y +V+ EI S+A LQAV++ A YL+S +++ ++ L +S +N T L+A ++ ++++ + AL+ + G ++E A+ VQI LK+ R D A ++L+ MQ DED TLTQLA AW++LA GG K+Q+AY IFQ Sbjct: 17 DELFDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASDSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQ 206
BLAST of FC930009 vs. ExPASy Swiss-Prot
Match: COPE_DICDI (Coatomer subunit epsilon OS=Dictyostelium discoideum GN=cope PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.151e-24 Identity = 69/198 (34.85%), Postives = 112/198 (56.57%), Query Frame = 1 Query: 100 DHLFNLRNNFYLGAYQAAINNSDLTN---LPPDDAVERDCLVYRSYIALGSYQLVISEIDESAAT----PLQAVKLLALYLSSPD-NKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQ-IDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQ 666 D LF +N FYLG YQ+ IN + + + E D +YR YIA G+Y LV+ E + + + ++LLA YLS PD N+E T+ ++ +W+SD + N L++I ++ +E+ Y+EAL+ N +E ++ +QIFLK+ R D A++ M++ ID D T L+ AW+N+ G K++ A F+ Sbjct: 4 DILFESKNYFYLGNYQSTINEINKKSRQIIEKSLKAESDYFLYRCYIAQGNYDLVLQETKNNRGSGEDPTIAGLQLLASYLSKPDENREGTLITITQWISDGVVKFNYHLQVIIATIYFNEQLYDEALQILNNCDHIEGLSMLIQIFLKIDRLDLAQKAYDTMKKIIDPDATPALLSLAWINIYNGEEKLKSALSSFE 201
BLAST of FC930009 vs. ExPASy Swiss-Prot
Match: COPE_CAEEL (Coatomer subunit epsilon OS=Caenorhabditis elegans GN=F45G2.4 PE=1 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.187e-17 Identity = 60/191 (31.41%), Postives = 107/191 (56.02%), Query Frame = 1 Query: 100 DHLFNLRNNFYLGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESA-ATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNE-ALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIF 663 D LF++RN F+LG+YQ+ I + ++ ++ E+D +YRSYIA G + + EI + + L AV+ A + ++P K+ ++ ++E ++ I S + L A I ++E D ++ A + + +E A V I +KM++ A +++ M QIDED TL+QLANA + K+++A I+ Sbjct: 3 DKLFSIRNYFFLGSYQSCIGEALKFSSKNEEEKQEKDVYLYRSYIAQGQAFIPLKEIPAATKSADLAAVRRYAEFRNNPAAKKKILAEVQEEVASRNIKSEIAAVLAATI--LNEADLSQDAFRAVSRFEGLEARASKVFILIKMNKRKLAIGEVKKMNQIDEDATLSQLANALVTSFGASGKVKDALYIY 191 The following BLAST results are available for this feature:
BLAST of FC930009 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 13
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930009 ID=FC930009; Name=FC930009; organism=Citrus clementina; type=EST; length=725bpback to top |