FC930009

Overview
NameFC930009
Unique NameFC930009
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930009 vs. ExPASy Swiss-Prot
Match: COPE_BOVIN (Coatomer subunit epsilon OS=Bos taurus GN=COPE PE=1 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 1.611e-36
Identity = 78/190 (41.05%), Postives = 122/190 (64.21%), Query Frame = 1
Query:  100 DHLFNLRNNFYLGAYQAAINNSDLTN-LPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQ 666
            D LF+++N FY+G+YQ  IN +       P+  VERD  +YR+Y+A   Y +V+ EI  S+A  LQAV++ A YL+S   +++ ++ L   +S     +N T  L+A  ++ ++++ + AL+  + G ++E  A+ VQI LK+ R D A ++L+ MQ  DED TLTQLA AW++LA GG K+Q+AY IFQ
Sbjct:   17 DELFDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASDSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQ 206          
BLAST of FC930009 vs. ExPASy Swiss-Prot
Match: COPE_DICDI (Coatomer subunit epsilon OS=Dictyostelium discoideum GN=cope PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.151e-24
Identity = 69/198 (34.85%), Postives = 112/198 (56.57%), Query Frame = 1
Query:  100 DHLFNLRNNFYLGAYQAAINNSDLTN---LPPDDAVERDCLVYRSYIALGSYQLVISEIDESAAT----PLQAVKLLALYLSSPD-NKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQ-IDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQ 666
            D LF  +N FYLG YQ+ IN  +  +   +      E D  +YR YIA G+Y LV+ E   +  +     +  ++LLA YLS PD N+E T+ ++ +W+SD  +  N  L++I   ++ +E+ Y+EAL+  N    +E  ++ +QIFLK+ R D A++    M++ ID D T   L+ AW+N+  G  K++ A   F+
Sbjct:    4 DILFESKNYFYLGNYQSTINEINKKSRQIIEKSLKAESDYFLYRCYIAQGNYDLVLQETKNNRGSGEDPTIAGLQLLASYLSKPDENREGTLITITQWISDGVVKFNYHLQVIIATIYFNEQLYDEALQILNNCDHIEGLSMLIQIFLKIDRLDLAQKAYDTMKKIIDPDATPALLSLAWINIYNGEEKLKSALSSFE 201          
BLAST of FC930009 vs. ExPASy Swiss-Prot
Match: COPE_CAEEL (Coatomer subunit epsilon OS=Caenorhabditis elegans GN=F45G2.4 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.187e-17
Identity = 60/191 (31.41%), Postives = 107/191 (56.02%), Query Frame = 1
Query:  100 DHLFNLRNNFYLGAYQAAINNS-DLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESA-ATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNVTLRLIAGIVFMHEEDYNE-ALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIF 663
            D LF++RN F+LG+YQ+ I  +   ++   ++  E+D  +YRSYIA G   + + EI  +  +  L AV+  A + ++P  K+  ++ ++E ++   I S +   L A I  ++E D ++ A +  +    +E  A  V I +KM++   A  +++ M QIDED TL+QLANA +       K+++A  I+
Sbjct:    3 DKLFSIRNYFFLGSYQSCIGEALKFSSKNEEEKQEKDVYLYRSYIAQGQAFIPLKEIPAATKSADLAAVRRYAEFRNNPAAKKKILAEVQEEVASRNIKSEIAAVLAATI--LNEADLSQDAFRAVSRFEGLEARASKVFILIKMNKRKLAIGEVKKMNQIDEDATLSQLANALVTSFGASGKVKDALYIY 191          
The following BLAST results are available for this feature:
BLAST of FC930009 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
COPE_BOVIN1.611e-3641.05Coatomer subunit epsilon OS=Bos taurus GN=COPE PE=... [more]
COPE_DICDI3.151e-2434.85Coatomer subunit epsilon OS=Dictyostelium discoide... [more]
COPE_CAEEL2.187e-1731.41Coatomer subunit epsilon OS=Caenorhabditis elegans... [more]

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Properties
Property NameValue
Genbank descriptionC34002G09EF PostHarvC1 Citrus clementina cDNA clone C34002G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930009 ID=FC930009; Name=FC930009; organism=Citrus clementina; type=EST; length=725bp
GCTGCGCGTTGGAGTTGAAGAAGGGATCCAATCTAAATCAAAGAAGCAAT
CGATCAAGAAGCGAAAAAGGAATAAAGAATGGCAGCGGCAGCAGCACCAG
ATCACTTGTTCAATCTGAGAAACAACTTCTACTTGGGGGCGTATCAGGCC
GCTATCAACAACAGCGACCTCACCAATCTTCCACCAGACGACGCCGTTGA
GCGTGACTGCCTCGTCTACCGCTCTTACATTGCCCTTGGCAGTTACCAGC
TTGTGATCAGTGAGATCGATGAGTCGGCTGCTACTCCTCTCCAAGCCGTG
AAGTTGCTTGCTCTCTATCTCTCTAGCCCTGACAACAAGGAATCAACAAT
TTCAAGTTTAAAAGAGTGGTTGTCAGATCCAGCCATTGGGAGCAATGTGA
CATTACGCTTGATTGCTGGTATCGTATTCATGCATGAAGAGGATTATAAT
GAGGCACTCAAACACACCAATGCTGGAGGGACCATGGAATTACATGCATT
GAATGTCCAAATATTCCTTAAGATGCACAGGTCTGACTATGCAGAGAGAC
AGCTGAGGGCCATGCAACAGATTGATGAGGACCACACCCTAACTCAACTC
GCAAATGCTTGGTTGAATTTGGCAGTGGGTGGTTCCAAGATACAGGAAGC
ATATCTCATCTTTCAGATTTCTCTGAGAAGTATCCATGACAGGGNTGATC
TTGATGGAAAGCTGTTGCTGCATGC
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