FC930010

Overview
NameFC930010
Unique NameFC930010
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: CIRBP_CRIGR (Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.433e-13
Identity = 37/89 (41.57%), Postives = 54/89 (60.67%), Query Frame = 1
Query:  127 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSG 390
            DE  ++VGGL +  NE ++ +VF KYG +  V +V DR T R + +GFVTF N   A DA+  MNG+++DGR +RV +        + G
Sbjct:    4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRG 92          
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: CIRBA_XENLA (Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-A PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.871e-13
Identity = 36/91 (39.56%), Postives = 54/91 (59.34%), Query Frame = 1
Query:  121 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSG 390
            + DE  +++GGL +  NED + + F KYG +  V +V DR T R + +GFVTF N   A DA+  MNG+++DGR +RV +      +   G
Sbjct:    1 MSDEGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQAGKSSGERRGG 91          
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.444e-13
Identity = 38/90 (42.22%), Postives = 57/90 (63.33%), Query Frame = 1
Query:  124 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSG 390
            D E   +VGGL ++ +E S+   F ++G +V  KI+NDR T R + +GFVTF + +S  DAI  MNG+ +DGR + V+E  +RG  +  G
Sbjct:    5 DVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSRGSGAGGG 94          
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.444e-13
Identity = 37/90 (41.11%), Postives = 56/90 (62.22%), Query Frame = 1
Query:  124 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSG 390
            D E   +VGGL ++ ++ ++   F +YG V+  KI+NDR T R + +GFVTF + +S  DAI  MNG+ +DGR + V+E  +RG     G
Sbjct:    5 DVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGG 94          
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 34/90 (37.78%), Postives = 57/90 (63.33%), Query Frame = 1
Query:  124 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSG 390
            D E   +VGGL ++ N +++ + F  +G V+  K++ DR T R + +GFVTF + +S +DAI +MNG+ +DGR + V++  +RG     G
Sbjct:    5 DVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQSRGGGGGGG 94          
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: GRP7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12
Identity = 36/90 (40.00%), Postives = 56/90 (62.22%), Query Frame = 1
Query:  124 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSG 390
            D E   +VGGL ++ ++ ++   F +YG V+  KI+NDR T R + +GFVTF + ++  DAI  MNG+ +DGR + V+E  +RG     G
Sbjct:    5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGG 94          
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 34/90 (37.78%), Postives = 55/90 (61.11%), Query Frame = 1
Query:  124 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSG 390
            D E   +VGGL ++ + +S+   F  YG ++  K++ DR T R + +GFVTF +  S +DAI +MNG+ +DGR + V++  +RG     G
Sbjct:    5 DVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQSRGGGGGGG 94          
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: RBM3_MOUSE (Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.702e-12
Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 1
Query:  127 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSG 390
            +E  ++VGGL ++ +E ++   F  +G +  V +V DR T R + +GF+TF NP  A DA+  MNG ++DGR +RV       R S  G
Sbjct:    4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSARGSRGG 92          
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: RBM3_RAT (Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.751e-11
Identity = 32/89 (35.96%), Postives = 51/89 (57.30%), Query Frame = 1
Query:  127 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSG 390
            +E  ++VGGL ++ +E ++   F  +G +  V +V DR T R + +GF+TF NP  A D +  MNG ++DGR +RV       R +  G
Sbjct:    4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESLDGRQIRVDHAGKSARGTRGG 92          
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.751e-11
Identity = 35/90 (38.89%), Postives = 53/90 (58.89%), Query Frame = 1
Query:  124 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSG 390
            D E   +VGGL ++ ++ S++  F KYG V+  KI+ DR T R + +GFVTF +  +   AI  MNG+ +DGR + V+E  +R      G
Sbjct:    3 DVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSRRSDGGGG 92          
The following BLAST results are available for this feature:
BLAST of FC930010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
CIRBP_CRIGR1.433e-1341.57Cold-inducible RNA-binding protein OS=Cricetulus g... [more]
CIRBA_XENLA1.871e-1339.56Cold-inducible RNA-binding protein A OS=Xenopus la... [more]
GRP2_SINAL2.444e-1342.22Glycine-rich RNA-binding protein GRP2A OS=Sinapis ... [more]
GRP1_SINAL5.444e-1341.11Glycine-rich RNA-binding protein GRP1A OS=Sinapis ... [more]
GRP2_SORBI7.110e-1337.78Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]
GRP7_ARATH1.213e-1240.00Glycine-rich RNA-binding protein 7 OS=Arabidopsis ... [more]
GRPA_MAIZE1.584e-1237.78Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
RBM3_MOUSE2.702e-1238.20Putative RNA-binding protein 3 OS=Mus musculus GN=... [more]
RBM3_RAT1.751e-1135.96Putative RNA-binding protein 3 OS=Rattus norvegicu... [more]
GRP_HORVU1.751e-1138.89Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]

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Properties
Property NameValue
Genbank descriptionC34002G10EF PostHarvC1 Citrus clementina cDNA clone C34002G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930010 ID=FC930010; Name=FC930010; organism=Citrus clementina; type=EST; length=714bp
AGAACTGCAAAAGTGGAGCGTCGTAGAGAAGGAGGCAGACAAGGAGTATC
CACATCCATAGTTGTGCCGATCAAGGCAAGACTAATTTTTAATTTGATTG
AAGAGAGAGTGAAAATGACGATAGATGACGAAAGCTCCGTGTACGTGGGG
GGGCTGCCTTACAGTGCTAACGAGGACAGCGTTCGCAAAGTCTTCGATAA
ATATGGTTCAGTCGTCGCCGTTAAGATCGTTAATGATCGGAGTACTAGGG
GGAAATGCTACGGTTTTGTTACTTTTGGGAATCCTCGATCAGCAGTTGAT
GCCATCAATGACATGAATGGCAGGACTATTGATGGGCGTGTTGTGAGAGT
AAGTGAAGTTGCAACTAGAGGTAGGAAATCAAATTCTGGTCGAGACCAAT
TTCGACATGGTCACCGTCATAAAGGTCGAGATAGGGATAATAATCGTCAC
AGGGACAGATATCAGGATCGATACAATGATAGGTCCAGAGAGCGTACTTC
ATCTCAGGACCGTGATAAAGGTATGGGAAGAGAATATGAGCACGTGCGTG
ATCATGATCGTGATCCATCTAGGGATCGTTTCTCGGATGAAGATCAAGGC
AGAGATTTGGAGAATAATGACCAAGGTCACACTAGGATCCATGATCCGGA
GTTGGCCAACTGGGAAAGGAAGAGTGAGTTGGATATGACTCGAGACAGGG
AGATTGATGGAACC
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