FC930010
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: CIRBP_CRIGR (Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.433e-13 Identity = 37/89 (41.57%), Postives = 54/89 (60.67%), Query Frame = 1 Query: 127 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSG 390 DE ++VGGL + NE ++ +VF KYG + V +V DR T R + +GFVTF N A DA+ MNG+++DGR +RV + + G Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRG 92
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: CIRBA_XENLA (Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-A PE=1 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 1.871e-13 Identity = 36/91 (39.56%), Postives = 54/91 (59.34%), Query Frame = 1 Query: 121 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSG 390 + DE +++GGL + NED + + F KYG + V +V DR T R + +GFVTF N A DA+ MNG+++DGR +RV + + G Sbjct: 1 MSDEGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQAGKSSGERRGG 91
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.444e-13 Identity = 38/90 (42.22%), Postives = 57/90 (63.33%), Query Frame = 1 Query: 124 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSG 390 D E +VGGL ++ +E S+ F ++G +V KI+NDR T R + +GFVTF + +S DAI MNG+ +DGR + V+E +RG + G Sbjct: 5 DVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSRGSGAGGG 94
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.444e-13 Identity = 37/90 (41.11%), Postives = 56/90 (62.22%), Query Frame = 1 Query: 124 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSG 390 D E +VGGL ++ ++ ++ F +YG V+ KI+NDR T R + +GFVTF + +S DAI MNG+ +DGR + V+E +RG G Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGG 94
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13 Identity = 34/90 (37.78%), Postives = 57/90 (63.33%), Query Frame = 1 Query: 124 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSG 390 D E +VGGL ++ N +++ + F +G V+ K++ DR T R + +GFVTF + +S +DAI +MNG+ +DGR + V++ +RG G Sbjct: 5 DVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQSRGGGGGGG 94
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: GRP7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12 Identity = 36/90 (40.00%), Postives = 56/90 (62.22%), Query Frame = 1 Query: 124 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSG 390 D E +VGGL ++ ++ ++ F +YG V+ KI+NDR T R + +GFVTF + ++ DAI MNG+ +DGR + V+E +RG G Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGG 94
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12 Identity = 34/90 (37.78%), Postives = 55/90 (61.11%), Query Frame = 1 Query: 124 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSG 390 D E +VGGL ++ + +S+ F YG ++ K++ DR T R + +GFVTF + S +DAI +MNG+ +DGR + V++ +RG G Sbjct: 5 DVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQSRGGGGGGG 94
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: RBM3_MOUSE (Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.702e-12 Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 1 Query: 127 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSG 390 +E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF NP A DA+ MNG ++DGR +RV R S G Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSARGSRGG 92
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: RBM3_RAT (Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 1.751e-11 Identity = 32/89 (35.96%), Postives = 51/89 (57.30%), Query Frame = 1 Query: 127 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSG 390 +E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF NP A D + MNG ++DGR +RV R + G Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESLDGRQIRVDHAGKSARGTRGG 92
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.751e-11 Identity = 35/90 (38.89%), Postives = 53/90 (58.89%), Query Frame = 1 Query: 124 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSG 390 D E +VGGL ++ ++ S++ F KYG V+ KI+ DR T R + +GFVTF + + AI MNG+ +DGR + V+E +R G Sbjct: 3 DVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSRRSDGGGG 92 The following BLAST results are available for this feature:
BLAST of FC930010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 32
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930010 ID=FC930010; Name=FC930010; organism=Citrus clementina; type=EST; length=714bpback to top |