FC930010
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: HNRPG_PANTR (Heterogeneous nuclear ribonucleoprotein G OS=Pan troglodytes GN=RBMX PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11 Identity = 31/79 (39.24%), Postives = 50/79 (63.29%), Query Frame = 1 Query: 124 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 357 D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A DA DMNG+++DG+ ++V + Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQ 83
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: HNRPG_HUMAN (Heterogeneous nuclear ribonucleoprotein G OS=Homo sapiens GN=RBMX PE=1 SV=3) HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11 Identity = 31/79 (39.24%), Postives = 50/79 (63.29%), Query Frame = 1 Query: 124 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 357 D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A DA DMNG+++DG+ ++V + Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQ 83
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11 Identity = 31/94 (32.98%), Postives = 58/94 (61.70%), Query Frame = 1 Query: 103 ERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKS 381 ER T + +YVG +P+ ++ + ++F ++G VV+ ++V DR T R + +GFVT + DAI +++G+++DGR +RV+ R R++ Sbjct: 220 ERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRSRRN 313
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11 Identity = 33/88 (37.50%), Postives = 57/88 (64.77%), Query Frame = 1 Query: 118 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRK 378 ++D + VYVG L + ++ +++++F + G+VV K+V DR S R + +GFVT+ + + DAI+ +NG +DGR +RVS R R+ Sbjct: 202 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERPRR 289
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11 Identity = 33/88 (37.50%), Postives = 57/88 (64.77%), Query Frame = 1 Query: 118 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRK 378 ++D + VYVG L + ++ +++++F + G+VV K+V DR S R + +GFVT+ + + DAI+ +NG +DGR +RVS R R+ Sbjct: 203 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERPRR 290
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: CSTFT_MOUSE (Cleavage stimulation factor 64 kDa subunit, tau variant OS=Mus musculus GN=Cstf2t PE=1 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11 Identity = 32/82 (39.02%), Postives = 52/82 (63.41%), Query Frame = 1 Query: 136 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRK 378 SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ ++NGR GR +RV A+ K Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNK 98
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: CSTFT_HUMAN (Cleavage stimulation factor 64 kDa subunit, tau variant OS=Homo sapiens GN=CSTF2T PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11 Identity = 32/82 (39.02%), Postives = 52/82 (63.41%), Query Frame = 1 Query: 136 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRK 378 SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ ++NGR GR +RV A+ K Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNK 98
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: RBM3_HUMAN (Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11 Identity = 32/89 (35.96%), Postives = 51/89 (57.30%), Query Frame = 1 Query: 127 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSG 390 +E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF NP A A+ MNG ++DGR +RV R + G Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHAGKSARGTRGG 92
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: C3H25_ORYSJ (Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa subsp. japonica GN=Os03g0826400 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11 Identity = 32/92 (34.78%), Postives = 55/92 (59.78%), Query Frame = 1 Query: 127 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQ 399 D + V+VGG+PY E + VF +YG VV V +V D+ T + K + F+ + + RS + A++++NG + GR+VRV V+ +K ++ Sbjct: 34 DSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGAKVLGRIVRVDHVSKYKKKEEEDEEE 125
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11 Identity = 32/94 (34.04%), Postives = 57/94 (60.64%), Query Frame = 1 Query: 103 ERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKS 381 ER T +YVG +P+ ++ + +VF ++G VV+ ++V DR S R + +GFVT + +AI +++G+T+DGR +RV+ R R++ Sbjct: 181 ERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERPRRN 274 The following BLAST results are available for this feature:
BLAST of FC930010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 32
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930010 ID=FC930010; Name=FC930010; organism=Citrus clementina; type=EST; length=714bpback to top |