FC930010

Overview
NameFC930010
Unique NameFC930010
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: HNRPG_PANTR (Heterogeneous nuclear ribonucleoprotein G OS=Pan troglodytes GN=RBMX PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 31/79 (39.24%), Postives = 50/79 (63.29%), Query Frame = 1
Query:  124 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 357
            D    +++GGL    NE ++  VF KYG +V V ++ DR T + + + FVTF +P  A DA  DMNG+++DG+ ++V +
Sbjct:    5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQ 83          
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: HNRPG_HUMAN (Heterogeneous nuclear ribonucleoprotein G OS=Homo sapiens GN=RBMX PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 31/79 (39.24%), Postives = 50/79 (63.29%), Query Frame = 1
Query:  124 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 357
            D    +++GGL    NE ++  VF KYG +V V ++ DR T + + + FVTF +P  A DA  DMNG+++DG+ ++V +
Sbjct:    5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQ 83          
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 31/94 (32.98%), Postives = 58/94 (61.70%), Query Frame = 1
Query:  103 ERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKS 381
            ER   T +    +YVG +P+  ++  + ++F ++G VV+ ++V DR T R + +GFVT  +     DAI +++G+++DGR +RV+    R R++
Sbjct:  220 ERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRSRRN 313          
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 33/88 (37.50%), Postives = 57/88 (64.77%), Query Frame = 1
Query:  118 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRK 378
            ++D  + VYVG L +  ++ +++++F + G+VV  K+V DR S R + +GFVT+ + +   DAI+ +NG  +DGR +RVS    R R+
Sbjct:  202 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERPRR 289          
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 33/88 (37.50%), Postives = 57/88 (64.77%), Query Frame = 1
Query:  118 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRK 378
            ++D  + VYVG L +  ++ +++++F + G+VV  K+V DR S R + +GFVT+ + +   DAI+ +NG  +DGR +RVS    R R+
Sbjct:  203 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERPRR 290          
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: CSTFT_MOUSE (Cleavage stimulation factor 64 kDa subunit, tau variant OS=Mus musculus GN=Cstf2t PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 32/82 (39.02%), Postives = 52/82 (63.41%), Query Frame = 1
Query:  136 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRK 378
            SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF  + +  +A+ A+ ++NGR   GR +RV   A+   K
Sbjct:   17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNK 98          
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: CSTFT_HUMAN (Cleavage stimulation factor 64 kDa subunit, tau variant OS=Homo sapiens GN=CSTF2T PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 32/82 (39.02%), Postives = 52/82 (63.41%), Query Frame = 1
Query:  136 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRK 378
            SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF  + +  +A+ A+ ++NGR   GR +RV   A+   K
Sbjct:   17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNK 98          
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: RBM3_HUMAN (Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 32/89 (35.96%), Postives = 51/89 (57.30%), Query Frame = 1
Query:  127 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSG 390
            +E  ++VGGL ++ +E ++   F  +G +  V +V DR T R + +GF+TF NP  A  A+  MNG ++DGR +RV       R +  G
Sbjct:    4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHAGKSARGTRGG 92          
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: C3H25_ORYSJ (Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa subsp. japonica GN=Os03g0826400 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 32/92 (34.78%), Postives = 55/92 (59.78%), Query Frame = 1
Query:  127 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQ 399
            D + V+VGG+PY   E  +  VF +YG VV V +V D+ T + K + F+ + + RS + A++++NG  + GR+VRV  V+   +K     ++
Sbjct:   34 DSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGAKVLGRIVRVDHVSKYKKKEEEDEEE 125          
BLAST of FC930010 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 32/94 (34.04%), Postives = 57/94 (60.64%), Query Frame = 1
Query:  103 ERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKS 381
            ER   T      +YVG +P+  ++  + +VF ++G VV+ ++V DR S R + +GFVT  +     +AI +++G+T+DGR +RV+    R R++
Sbjct:  181 ERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERPRRN 274          
The following BLAST results are available for this feature:
BLAST of FC930010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
HNRPG_PANTR2.287e-1139.24Heterogeneous nuclear ribonucleoprotein G OS=Pan t... [more]
HNRPG_HUMAN2.287e-1139.24Heterogeneous nuclear ribonucleoprotein G OS=Homo ... [more]
ROC4_NICSY2.987e-1132.9831 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC2_NICSY3.901e-1137.5029 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
ROC2_NICPL3.901e-1137.5031 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
CSTFT_MOUSE3.901e-1139.02Cleavage stimulation factor 64 kDa subunit, tau va... [more]
CSTFT_HUMAN3.901e-1139.02Cleavage stimulation factor 64 kDa subunit, tau va... [more]
RBM3_HUMAN6.655e-1135.96Putative RNA-binding protein 3 OS=Homo sapiens GN=... [more]
C3H25_ORYSJ6.655e-1134.78Zinc finger CCCH domain-containing protein 25 OS=O... [more]
ROC3_NICSY8.691e-1134.0428 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]

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Properties
Property NameValue
Genbank descriptionC34002G10EF PostHarvC1 Citrus clementina cDNA clone C34002G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930010 ID=FC930010; Name=FC930010; organism=Citrus clementina; type=EST; length=714bp
AGAACTGCAAAAGTGGAGCGTCGTAGAGAAGGAGGCAGACAAGGAGTATC
CACATCCATAGTTGTGCCGATCAAGGCAAGACTAATTTTTAATTTGATTG
AAGAGAGAGTGAAAATGACGATAGATGACGAAAGCTCCGTGTACGTGGGG
GGGCTGCCTTACAGTGCTAACGAGGACAGCGTTCGCAAAGTCTTCGATAA
ATATGGTTCAGTCGTCGCCGTTAAGATCGTTAATGATCGGAGTACTAGGG
GGAAATGCTACGGTTTTGTTACTTTTGGGAATCCTCGATCAGCAGTTGAT
GCCATCAATGACATGAATGGCAGGACTATTGATGGGCGTGTTGTGAGAGT
AAGTGAAGTTGCAACTAGAGGTAGGAAATCAAATTCTGGTCGAGACCAAT
TTCGACATGGTCACCGTCATAAAGGTCGAGATAGGGATAATAATCGTCAC
AGGGACAGATATCAGGATCGATACAATGATAGGTCCAGAGAGCGTACTTC
ATCTCAGGACCGTGATAAAGGTATGGGAAGAGAATATGAGCACGTGCGTG
ATCATGATCGTGATCCATCTAGGGATCGTTTCTCGGATGAAGATCAAGGC
AGAGATTTGGAGAATAATGACCAAGGTCACACTAGGATCCATGATCCGGA
GTTGGCCAACTGGGAAAGGAAGAGTGAGTTGGATATGACTCGAGACAGGG
AGATTGATGGAACC
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