FC930011

Overview
NameFC930011
Unique NameFC930011
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PAP1L_HUMAN (Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.567e-19
Identity = 56/163 (34.36%), Postives = 87/163 (53.37%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIK----KDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQRED---TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            S+YVG++HP VT A+L E FS  GP+   ++ +    +    Y ++++     A  A+ T+N   + GQPI++ W    SQR+     SG  N+F+ +L   + +  L+  FS F      +V   +    SRGFGFV F   E AQ AIN +NG  L +R++
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMLKGQPIRIMW----SQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTMNGMLLNDRKV 168          

HSP 2 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 56/206 (27.18%), Postives = 95/206 (46.12%), Query Frame = 2
Query:  122 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXKGATSGDEKQVQIPKC----CRAYNGIS 706
            P    S   ++++ N+   + N  L + FS+ G +  CK+   +  S  +GFV +    +A  AI T+NG  +  + + V    +  +RE   G       N++V +L  +V +  L   FS F      +VM    +G SR FGFV+F   E+AQ A+  +NGK +  R +    A K     +E + +  +      R Y G++
Sbjct:   91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVM-RDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVN 295          

HSP 3 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 45/174 (25.86%), Postives = 85/174 (48.85%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH---------------FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            ++YV N+   V    LQ++FS  G +   K+++ +      +GFV++     A  A+V +NG+ + G+ +    A    +R++                    N++V +L   + D  L   FS +   + A+VM   + G S+GFGFV F + E+A  A+ ++NG+ +G + +
Sbjct:  192 NIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 363          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.909e-18
Identity = 54/163 (33.13%), Postives = 84/163 (51.53%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            S+YVG + P +T ALL +VFS  GP+   ++    + K    Y +V+Y D  +   AI  LN   I G+P ++ W    S+R+      G  N+F+ +L P + +  L   FS F      +V   +  G SRGFGFV F+ + DA+ AI  +NG  +   ++
Sbjct:   51 SLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQELNYAEINGRPCRIMW----SERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDEN-GNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEV 208          

HSP 2 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 49/182 (26.92%), Postives = 85/182 (46.70%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXKGATSGDEKQVQ 670
            ++++ N+HP + N  L E FS+ G +  CK+   +  +   +GFV + +   A  AI  +NG  + G  + V        R    E+   +F N++V ++  E TD      FS +     A  +     G+ +GFGFV+F +   A  A+ +LNGK   ++ +    A K     +E + Q
Sbjct:  139 NIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSA-ALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKKQ 319          

HSP 3 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 49/165 (29.70%), Postives = 81/165 (49.09%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHF--------------NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLN 589
            ++YV NI  + T+   +++FS  G +    L K  +     +GFV++ D  +AA A+  LNG+    Q + V  A    +R E+    +              N+F+ +L   + D  L   F+ + T + ARVM  Q+ G S+GFGFV F + E+A  A+ + N
Sbjct:  232 NIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQE-GNSKGFGFVCFSSPEEATKAMTEKN 395          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18
Identity = 55/171 (32.16%), Postives = 98/171 (57.31%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQP--IKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACF-SVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 631
            ++++G + P VT A +Q+V+++ G     KLI+       + Y FV++     A+ A+ ++N + I G     K+NWA     RE +   +  +++FVGDLSP V +  +++ F S + +C  A++M   +T  SRG+GFV F ++ D +SA+ ++ G+  G+R IR   A
Sbjct:   94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLA 263          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.553e-18
Identity = 54/163 (33.13%), Postives = 90/163 (55.21%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            S+YVG++HP VT A+L E FS  GP+   +    +I +    Y +V++     A  A+ T+N   I G+P+++ W    SQR+ +   SG  N+F+ +L   + +  L+  FS F      +V+  +    S+G+GFV F  QE A+ AI+ +NG  L +R++
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKV 168          

HSP 2 Score: 82.8037 bits (203), Expect = 1.975e-15
Identity = 54/179 (30.17%), Postives = 87/179 (48.60%), Query Frame = 2
Query:  122 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXK 637
            P    S   ++++ N+   + N  L + FS+ G +  CK++  +  S  YGFV +  + +A  AI  +NG  +  + + V    +  +RE   G       NV++ +   ++ D  L   F  +      +VM     G+SRGFGFVSF   EDAQ A++D+NGK L  + I    A K
Sbjct:   91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQK 268          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 54/163 (33.13%), Postives = 89/163 (54.60%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            S+YVG++HP VT A+L E FS  GP+   +    +I +    Y +V++     A  A+ T+N   I G+P+++ W    SQR+ +   SG  N+F+ +L   + +  L+  FS F      +V+  +    S+G+GFV F  QE A+ AI  +NG  L +R++
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168          

HSP 2 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 54/179 (30.17%), Postives = 90/179 (50.28%), Query Frame = 2
Query:  122 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXK 637
            P    S   ++++ N+   + N  L + FS+ G +  CK++  +  S  YGFV +  + +A  AI  +NG  +  + + V    +  +RE   G       NV++ +   ++ D  L   F  F      +VM  + +G+S+GFGFVSF   EDAQ A++++NGK L  +QI    A K
Sbjct:   91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268          

HSP 3 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 47/174 (27.01%), Postives = 82/174 (47.13%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH---------------FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            +VY+ N    + +  L+E+F   GP    K++  +      +GFV +     A  A+  +NG+ + G+ I V  A    +R+                     N++V +L   + D  L   FS F T + A+VM   + GRS+GFGFV F + E+A  A+ ++NG+ +  + +
Sbjct:  192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 54/163 (33.13%), Postives = 89/163 (54.60%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            S+YVG++HP VT A+L E FS  GP+   +    +I +    Y +V++     A  A+ T+N   I G+P+++ W    SQR+ +   SG  N+F+ +L   + +  L+  FS F      +V+  +    S+G+GFV F  QE A+ AI  +NG  L +R++
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168          

HSP 2 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 54/179 (30.17%), Postives = 90/179 (50.28%), Query Frame = 2
Query:  122 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXK 637
            P    S   ++++ N+   + N  L + FS+ G +  CK++  +  S  YGFV +  + +A  AI  +NG  +  + + V    +  +RE   G       NV++ +   ++ D  L   F  F      +VM  + +G+S+GFGFVSF   EDAQ A++++NGK L  +QI    A K
Sbjct:   91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268          

HSP 3 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 47/174 (27.01%), Postives = 82/174 (47.13%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH---------------FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            +VY+ N    + +  L+E+F   GP    K++  +      +GFV +     A  A+  +NG+ + G+ I V  A    +R+                     N++V +L   + D  L   FS F T + A+VM   + GRS+GFGFV F + E+A  A+ ++NG+ +  + +
Sbjct:  192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 54/163 (33.13%), Postives = 89/163 (54.60%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            S+YVG++HP VT A+L E FS  GP+   +    +I +    Y +V++     A  A+ T+N   I G+P+++ W    SQR+ +   SG  N+F+ +L   + +  L+  FS F      +V+  +    S+G+GFV F  QE A+ AI  +NG  L +R++
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168          

HSP 2 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 54/179 (30.17%), Postives = 90/179 (50.28%), Query Frame = 2
Query:  122 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXK 637
            P    S   ++++ N+   + N  L + FS+ G +  CK++  +  S  YGFV +  + +A  AI  +NG  +  + + V    +  +RE   G       NV++ +   ++ D  L   F  F      +VM  + +G+S+GFGFVSF   EDAQ A++++NGK L  +QI    A K
Sbjct:   91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268          

HSP 3 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 46/174 (26.44%), Postives = 82/174 (47.13%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH---------------FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            +VY+ N    + +  L+++F   GP    K++  +      +GFV +     A  A+  +NG+ + G+ I V  A    +R+                     N++V +L   + D  L   FS F T + A+VM   + GRS+GFGFV F + E+A  A+ ++NG+ +  + +
Sbjct:  192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 54/163 (33.13%), Postives = 89/163 (54.60%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            S+YVG++HP VT A+L E FS  GP+   +    +I +    Y +V++     A  A+ T+N   I G+P+++ W    SQR+ +   SG  N+F+ +L   + +  L+  FS F      +V+  +    S+G+GFV F  QE A+ AI  +NG  L +R++
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168          

HSP 2 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 54/179 (30.17%), Postives = 90/179 (50.28%), Query Frame = 2
Query:  122 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXK 637
            P    S   ++++ N+   + N  L + FS+ G +  CK++  +  S  YGFV +  + +A  AI  +NG  +  + + V    +  +RE   G       NV++ +   ++ D  L   F  F      +VM  + +G+S+GFGFVSF   EDAQ A++++NGK L  +QI    A K
Sbjct:   91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268          

HSP 3 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 46/174 (26.44%), Postives = 82/174 (47.13%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH---------------FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            +VY+ N    + +  L+++F   GP    K++  +      +GFV +     A  A+  +NG+ + G+ I V  A    +R+                     N++V +L   + D  L   FS F T + A+VM   + GRS+GFGFV F + E+A  A+ ++NG+ +  + +
Sbjct:  192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 58/163 (35.58%), Postives = 88/163 (53.99%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CKLIKKDKS-SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQRED---TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            S+YVG++HP VT A+L E FS  GP+     C+ I   +S  Y ++++     A  A+ T+N   I G+PI++ W    SQR+     SG  NVF+ +L   + +  L+  FS F      +V+  +    SRG+GFV F  QE A  AI  +NG  L +R++
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMW----SQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEH--GSRGYGFVHFETQEAANRAIQTMNGMLLNDRKV 168          

HSP 2 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 57/179 (31.84%), Postives = 91/179 (50.84%), Query Frame = 2
Query:  122 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXK 637
            P    S   +V++ N+   + N  L + FS+ G +  CK++  +  S  YGFV +  + +A  AI T+NG  +  + + V    +  +RE   G       NV++ +   ++ D  L   FS F      +VM    TGRSRGFGFV++ N E+AQ A++++NGK +  R I    A K
Sbjct:   91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQK 268          

HSP 3 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 47/174 (27.01%), Postives = 84/174 (48.28%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS---SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH---------------FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            +VY+ N    + +  L+E+FS+ G     K++  D      +GFV+Y +   A  A+  +NG+ + G+ I V  A    +R+                     N++V +L   + D  L   FS + T + A+VM   + G S+GFGFV F + E+A  A+ ++NG+ +  + +
Sbjct:  192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: SAP49_SCHPO (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe GN=sap49 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17
Identity = 54/181 (29.83%), Postives = 97/181 (53.59%), Query Frame = 2
Query:  125 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXKGATSGD 655
            R D +   ++Y+GN+  +VT+++L E+    GP+    +    ++   + +GF ++   +    A   LN   +FG+PI+VN A +  +  +T    N+FVG+L P V +  L+  FS       A  +   + GRS+G+GFVS+ + E A +AI  +N ++L N+ I  ++A K    G+
Sbjct:    4 REDRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILNQVKLFGKPIRVNRA-SQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKGE 183          
The following BLAST results are available for this feature:
BLAST of FC930011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
PAP1L_HUMAN8.567e-1934.36Polyadenylate-binding protein 1-like OS=Homo sapie... [more]
PABP_KLULA1.909e-1833.13Polyadenylate-binding protein, cytoplasmic and nuc... [more]
YG41_SCHPO3.256e-1832.16Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
PABPB_XENLA5.553e-1833.13Polyadenylate-binding protein 1-B OS=Xenopus laevi... [more]
PABP1_RAT7.253e-1833.13Polyadenylate-binding protein 1 OS=Rattus norvegic... [more]
PABP1_MOUSE7.253e-1833.13Polyadenylate-binding protein 1 OS=Mus musculus GN... [more]
PABP1_HUMAN7.253e-1833.13Polyadenylate-binding protein 1 OS=Homo sapiens GN... [more]
PABP1_BOVIN7.253e-1833.13Polyadenylate-binding protein 1 OS=Bos taurus GN=P... [more]
EPAB_XENTR7.253e-1835.58Embryonic polyadenylate-binding protein OS=Xenopus... [more]
SAP49_SCHPO1.237e-1729.83Spliceosome-associated protein 49 OS=Schizosacchar... [more]

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Properties
Property NameValue
Genbank descriptionC34002G12EF PostHarvC1 Citrus clementina cDNA clone C34002G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930011 ID=FC930011; Name=FC930011; organism=Citrus clementina; type=EST; length=707bp
GACGATGCAGCAGCATAGGCTGAAGCAACAAACAATGATGCAGCAGCAGT
CTTTATACCAATACCATCCCAGTCTCTTAGCTGCTCCTCAGATAGAGCCT
ATCTTGAGTGGAAATCTGCCTCCGCGATTTGATGCAAGTACATGCCGCAG
CGTGTATGTTGGAAACATTCATCCTCAGGTTACAAATGCCCTGCTTCAAG
AGGTTTTTTCAAGTACCGGTCCCCTTGAAGGATGCAAGCTCATTAAAAAA
GATAAGTCATCCTATGGCTTTGTGGACTACTTTGATCGCAGATCAGCTGC
CCTTGCAATTGTGACTCTTAATGGAAGGCACATATTTGGACAACCTATTA
AAGTAAACTGGGCTTATGCTAGCAGCCAGAGAGAGGACACATCAGGTCAT
TTCAACGTTTTTGTTGGTGATCTTAGCCCTGAAGTTACAGATGCTACTTT
GTTTGCGTGCTTCTCTGTGTTTCCTACTTGTTCGGATGCAAGGGTTATGT
GGGGCCAAAAGACTGGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTTCGG
AATCAGGAGGATGCCCAAAGTGCAATAAATGACTTAAATGGGAAGTGGCT
TGGTAATAGACAGATTCGGTGCAACTGGGCTGNCAAAGGTGCTACCTCTG
GTGATGAAAAGCAAGTTCAGATTCCAAAGTGTTGTAGAGCTTACAATGGA
ATATCTG
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