FC930011

Overview
NameFC930011
Unique NameFC930011
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: RBM42_DANRE (RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 33/89 (37.08%), Postives = 56/89 (62.92%), Query Frame = 2 
Query:  353 VNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 619
            V+W   S    +T   F +F GDL  EV D  L   FS +P+   A+V+  ++TG+++G+GFVSF++  D   A+ ++NG+++G+R I+
Sbjct:  288 VSWEDTSLLEWETDD-FRIFCGDLGNEVNDDILARAFSRYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGRYVGSRPIK 375
The following BLAST results are available for this feature:
BLAST of FC930011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
RBM42_DANRE6.575e-1137.08RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC34002G12EF PostHarvC1 Citrus clementina cDNA clone C34002G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930011 ID=FC930011; Name=FC930011; organism=Citrus clementina; type=EST; length=707bp
GACGATGCAGCAGCATAGGCTGAAGCAACAAACAATGATGCAGCAGCAGT
CTTTATACCAATACCATCCCAGTCTCTTAGCTGCTCCTCAGATAGAGCCT
ATCTTGAGTGGAAATCTGCCTCCGCGATTTGATGCAAGTACATGCCGCAG
CGTGTATGTTGGAAACATTCATCCTCAGGTTACAAATGCCCTGCTTCAAG
AGGTTTTTTCAAGTACCGGTCCCCTTGAAGGATGCAAGCTCATTAAAAAA
GATAAGTCATCCTATGGCTTTGTGGACTACTTTGATCGCAGATCAGCTGC
CCTTGCAATTGTGACTCTTAATGGAAGGCACATATTTGGACAACCTATTA
AAGTAAACTGGGCTTATGCTAGCAGCCAGAGAGAGGACACATCAGGTCAT
TTCAACGTTTTTGTTGGTGATCTTAGCCCTGAAGTTACAGATGCTACTTT
GTTTGCGTGCTTCTCTGTGTTTCCTACTTGTTCGGATGCAAGGGTTATGT
GGGGCCAAAAGACTGGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTTCGG
AATCAGGAGGATGCCCAAAGTGCAATAAATGACTTAAATGGGAAGTGGCT
TGGTAATAGACAGATTCGGTGCAACTGGGCTGNCAAAGGTGCTACCTCTG
GTGATGAAAAGCAAGTTCAGATTCCAAAGTGTTGTAGAGCTTACAATGGA
ATATCTG
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