FC930011

Overview
NameFC930011
Unique NameFC930011
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17
Identity = 65/203 (32.02%), Postives = 103/203 (50.74%), Query Frame = 2
Query:  110 GNLPPRFDASTCRSVYVG------NIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQP---IKVNWAYASSQREDTS-------GHFNVFVGDLSPEVTDATLFACF-SVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXKGATSGDEKQV 667
            G+L P +D +T R ++        N+     N L     SS GP        K+   Y FVD+     AA A++  NG  I   P   +K+NWA +S    + S        + ++FVGDL+P VT++ LF  F + + + S A+++  Q TG S+G+GFV F N ++ Q A++++ G +L  R I+      G TSG ++ V
Sbjct:   59 GDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGP--------KNNQGYCFVDFPSSTHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKV-----GPTSGQQQHV 247          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17
Identity = 57/163 (34.97%), Postives = 88/163 (53.99%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CKLIKKDKS-SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQRED---TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            S+Y+G++HP VT A+L E FS  GP+     C+ I   +S SY ++++     A  A+ T+N   I G+PI++ W    SQR+     SG  NVF+ +L   + +  L+  FS F      +V+  +    SRG+GFV F   E A  AI  +NG  L +R++
Sbjct:   12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTMNFEVIKGRPIRIMW----SQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEH--GSRGYGFVHFETHEAANRAIQTMNGMLLNDRKV 168          

HSP 2 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 56/179 (31.28%), Postives = 90/179 (50.28%), Query Frame = 2
Query:  122 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXK 637
            P    S   +V++ N+   + N  L + FS+ G +  CK++  +  S  YGFV +    +A  AI T+NG  +  + + V    +  +RE   G       NV++ +   ++ D  L   FS F      +VM    +GRSRGFGFV++ N E+AQ A++++NGK +  R I    A K
Sbjct:   91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQK 268          

HSP 3 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 46/174 (26.44%), Postives = 83/174 (47.70%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS---SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH---------------FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            +VY+ N    + +  L+E+FS+ G     K++  D      +GFV+Y +   A  A+  +NG+ + G+ I V  A    +R+                     N++V +L   + D  L   F  + T + A+VM   + G S+GFGFV F + E+A  A+ ++NG+ +  + +
Sbjct:  192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 55/163 (33.74%), Postives = 87/163 (53.37%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            S+YVG++HP VT A+L E FS  GP+   +    LI    S+Y +V++   + A  A+ T+N   I G+P+++ W    SQR+ +   SG  N+FV +L   + +  L+   S F       V+  +    S+G+GFV F   E A+ AI  +NG  L  R++
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKV 168          

HSP 2 Score: 83.9593 bits (206), Expect = 8.866e-16
Identity = 54/179 (30.17%), Postives = 88/179 (49.16%), Query Frame = 2
Query:  122 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHF-----NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXK 637
            P    S   +++V N+   + N  L +  S+ G +  C ++  +  S  YGFV +    +A  AI  +NG  + G+ + V    +  +RE   G       NV++ +   ++ D  L   F  F      +VM  + +G+S+GFGFVSF   EDAQ A++++NGK L  +QI    A K
Sbjct:   91 PSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268          

HSP 3 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 46/174 (26.44%), Postives = 82/174 (47.13%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH---------------FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            +VY+ N    + +  L+++F   GP    K++  +      +GFV +     A  A+  +NG+ + G+ I V  A    +R+                     N++V +L   + D  L   FS F T + A+VM   + GRS+GFGFV F + E+A  A+ ++NG+ +  + +
Sbjct:  192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: EPABB_XENLA (Embryonic polyadenylate-binding protein B OS=Xenopus laevis GN=epabp-B PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 57/163 (34.97%), Postives = 88/163 (53.99%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEG---CKLIKKDKS-SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQRED---TSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            S+Y+G++HP VT A+L E FS  GP+     C+ I   +S  Y ++++     A  A+ T+N   I G+PI++ W    SQR+     SG  NVF+ +L   + +  L+  FS F      +V+  +    SRG+GFV F  QE A  AI  +NG  L +R++
Sbjct:   12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMW----SQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEY--GSRGYGFVHFETQEAANRAIQTMNGMLLNDRKV 168          

HSP 2 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 55/179 (30.73%), Postives = 90/179 (50.28%), Query Frame = 2
Query:  122 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXK 637
            P    S   +V++ N+   + N  L + FS+ G +  CK++  +  S  YGFV +  + +A  AI T+NG  +  + + V    +  +RE   G       NV++ +   ++ D  L   FS F      +VM    +GRSRGFGFV++ N E+AQ A+ ++NGK +  R +    A K
Sbjct:   91 PGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMM-DNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQK 268          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PABP_CANGA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida glabrata GN=PAB1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17
Identity = 55/163 (33.74%), Postives = 89/163 (54.60%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            S+YVG++ P V+ A L ++FS  G +   ++    I K    Y +V++ D  +A  AI  LN   I G+  ++ W    SQR+ +    G  N+F+ +L P++ +  L+  FSVF     ++V   + TG+S+GFG+V F   E A  AI+ LNG  L  ++I
Sbjct:   36 SLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMW----SQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSSKVATDE-TGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEI 193          

HSP 2 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 48/171 (28.07%), Postives = 83/171 (48.54%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT-----SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXK 637
            ++++ N+HP + N  L + FS  G +   K+   +      +G+V + +  SA+ AI  LNG  + GQ I V    +  +RE       +   NV++ +++ E TD       + F   +D+ V+     G ++GFGFV+F N EDA   + +LN      + +  N A K
Sbjct:  124 NIFIKNLHPDIDNKALYDTFSVFGNILSSKVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESKFEEMKANFTNVYIKNINTETTDKEFEELVAKFGK-TDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQK 293          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17
Identity = 53/163 (32.52%), Postives = 88/163 (53.99%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            S+YVG++HP  T A+L E FS  GP+   +    +I +    Y +V++     A  A+ T+N   I G+P+++ W    SQR+ +   SG  N+F+ +L   + +  L+  FS F      +V+  +    S+G+GFV F  QE A+ AI  +NG  L +R++
Sbjct:   12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168          

HSP 2 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 54/179 (30.17%), Postives = 90/179 (50.28%), Query Frame = 2
Query:  122 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXK 637
            P    S   ++++ N+   + N  L + FS+ G +  CK++  +  S  YGFV +  + +A  AI  +NG  +  + + V    +  +RE   G       NV++ +   ++ D  L   F  F      +VM  + +G+S+GFGFVSF   EDAQ A++++NGK L  +QI    A K
Sbjct:   91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268          

HSP 3 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 46/174 (26.44%), Postives = 82/174 (47.13%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH---------------FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            +VY+ N    + +  L+++F   GP    K++  +      +GFV +     A  A+  +NG+ + G+ I V  A    +R+                     N++V +L   + D  L   FS F T + A+VM   + GRS+GFGFV F + E+A  A+ ++NG+ +  + +
Sbjct:  192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 53/163 (32.52%), Postives = 89/163 (54.60%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            S+YVG++H  VT A+L E FS  GP+   +    +I +    Y +V++     A  A+ T+N   I G+P+++ W    SQR+ +   SG  N+F+ +L   + +  L+  FS F      +V+  +    S+G+GFV F  QE A+ AI+ +NG  L +R++
Sbjct:   12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKV 168          

HSP 2 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 50/179 (27.93%), Postives = 87/179 (48.60%), Query Frame = 2
Query:  122 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXK 637
            P    S   ++++ N+   + N  L + FS+ G +  CK++  +  S  YGFV +  + +A  AI  +NG  +  + + V    +  +RE   G       NV++ +   ++ D  L   F  +      +VM     G+S+GFGFVSF   EDAQ A++++NGK +  + +    A K
Sbjct:   91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDN-GKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQK 268          

HSP 3 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 46/174 (26.44%), Postives = 81/174 (46.55%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH---------------FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            +VY+ N    + +  L+E+F   GP    K++  D      +GFV +     A  A+  +NG+ + G+ + V  A    +R+                     N++V +L   + D  L   F  F T + A+VM   + GRS+GFGFV F + E+A  A+ ++NG+ +  + +
Sbjct:  192 NVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PABP_ASHGO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.140e-17
Identity = 55/181 (30.39%), Postives = 94/181 (51.93%), Query Frame = 2
Query:   89 QIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS-SQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            Q  P  + +  P+ + S   S+YVG + P V+ ALL ++FS  G +   ++    I      Y +V++ D  +   AI  LN   I G+P ++ W+    S R+  SG  N+++ +L P + + +L   FS F      +V   +  G SRGFGFV F N+ DA+ AI  ++G  + ++++
Sbjct:   20 QTAPTTTESETPKVETSGA-SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSG--NIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDEN-GVSRGFGFVHFENESDARDAIEAVDGMLMNDQEV 196          

HSP 2 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 52/165 (31.52%), Postives = 79/165 (47.88%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA-------------YASSQREDTSGH--FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLN 589
            +VYV NI  + +    +E+F   G +    L K  +     +GFV++ D  +AA A+  LN     GQ + V  A             Y +++ E  + +   N+FV +L   + D  L   F+ F T + A+VM   +TG SRGFGFV F   E+A  AI + N
Sbjct:  220 NVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVM-RDETGNSRGFGFVCFSTPEEATKAITEKN 383          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.047e-16
Identity = 54/163 (33.13%), Postives = 86/163 (52.76%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCK----LIKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            S+YVG++H  VT A+L E FS  GP+   +    +I +    Y +V++     A  A+ T+N   I G+PI++ W    SQR+ +   SG  NVF+ +L   + +  L+  FS F      +V+  +    S+G+ FV F  QE A  AI  +NG  L +R++
Sbjct:   12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMW----SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKV 168          

HSP 2 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 53/179 (29.61%), Postives = 86/179 (48.04%), Query Frame = 2
Query:  122 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSG-----HFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXK 637
            P    S   +V++ N+   + N  L + FS+ G +  CK++  +  S  Y FV +  + +A  AI  +NG  +  + + V    +  +RE   G       NV++ +   EV D +L   FS F      +VM     G+S+GFGFVS+   EDA  A+ ++NGK +  + I    A K
Sbjct:   91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVM-RDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268          

HSP 3 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 50/174 (28.74%), Postives = 87/174 (50.00%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQRE-DTSGHF--------------NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            +VY+ N   +V +  L+E+FS  G     K+++        +GFV Y     A  A+  +NG+ I G+ I V  A    +R+ +    F              N+++ +L   + D  L   FS F + + A+VM   + GRS+GFGFV F + E+A  A+ ++NG+ +G++ +
Sbjct:  192 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PABP_YEAST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Saccharomyces cerevisiae GN=PAB1 PE=1 SV=4)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 52/161 (32.30%), Postives = 88/161 (54.66%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS-SQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            S+YVG++ P V+ A L ++FS  G +   ++    I K    Y +V++ D  +   AI  LN   I G+  ++ W+    S R+  SG  N+F+ +L P++ +  L+  FSVF     +++   +  G+S+GFGFV F  +  A+ AI+ LNG  L  ++I
Sbjct:   39 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSG--NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDEN-GKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEI 196          

HSP 2 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 50/171 (29.24%), Postives = 82/171 (47.95%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKV----NWAYASSQREDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXK 637
            ++++ N+HP + N  L + FS  G +   K+   +      +GFV + +  +A  AI  LNG  + GQ I V    +     SQ E+T  H+ N++V +++ E TD      F+ F     A +      G+ +GFGFV++   EDA  A+  LN   L   ++    A K
Sbjct:  127 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLE-KDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQK 296          

HSP 3 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 50/165 (30.30%), Postives = 79/165 (47.88%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR-------------EDTSGH--FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLN 589
            ++YV NI+ + T+   QE+F+  GP+    L K        +GFV+Y     A  A+  LN   + G+ + V  A   ++R             E  + +   N+FV +L   V D  L   F+ + T + A+VM   + G+S+GFGFV F   E+A  AI + N
Sbjct:  220 NLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVM-RTENGKSKGFGFVCFSTPEEATKAITEKN 383          
The following BLAST results are available for this feature:
BLAST of FC930011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
NAM8_YEAST1.237e-1732.02Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 P... [more]
EPABA_XENLA1.237e-1734.97Embryonic polyadenylate-binding protein A OS=Xenop... [more]
PABP3_HUMAN1.616e-1733.74Polyadenylate-binding protein 3 OS=Homo sapiens GN... [more]
EPABB_XENLA1.616e-1734.97Embryonic polyadenylate-binding protein B OS=Xenop... [more]
PABP_CANGA2.110e-1733.74Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP1_PONAB2.110e-1732.52Polyadenylate-binding protein 1 OS=Pongo abelii GN... [more]
PABPA_XENLA4.701e-1732.52Polyadenylate-binding protein 1-A OS=Xenopus laevi... [more]
PABP_ASHGO6.140e-1730.39Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP4_HUMAN3.047e-1633.13Polyadenylate-binding protein 4 OS=Homo sapiens GN... [more]
PABP_YEAST3.980e-1632.30Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionC34002G12EF PostHarvC1 Citrus clementina cDNA clone C34002G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930011 ID=FC930011; Name=FC930011; organism=Citrus clementina; type=EST; length=707bp
GACGATGCAGCAGCATAGGCTGAAGCAACAAACAATGATGCAGCAGCAGT
CTTTATACCAATACCATCCCAGTCTCTTAGCTGCTCCTCAGATAGAGCCT
ATCTTGAGTGGAAATCTGCCTCCGCGATTTGATGCAAGTACATGCCGCAG
CGTGTATGTTGGAAACATTCATCCTCAGGTTACAAATGCCCTGCTTCAAG
AGGTTTTTTCAAGTACCGGTCCCCTTGAAGGATGCAAGCTCATTAAAAAA
GATAAGTCATCCTATGGCTTTGTGGACTACTTTGATCGCAGATCAGCTGC
CCTTGCAATTGTGACTCTTAATGGAAGGCACATATTTGGACAACCTATTA
AAGTAAACTGGGCTTATGCTAGCAGCCAGAGAGAGGACACATCAGGTCAT
TTCAACGTTTTTGTTGGTGATCTTAGCCCTGAAGTTACAGATGCTACTTT
GTTTGCGTGCTTCTCTGTGTTTCCTACTTGTTCGGATGCAAGGGTTATGT
GGGGCCAAAAGACTGGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTTCGG
AATCAGGAGGATGCCCAAAGTGCAATAAATGACTTAAATGGGAAGTGGCT
TGGTAATAGACAGATTCGGTGCAACTGGGCTGNCAAAGGTGCTACCTCTG
GTGATGAAAAGCAAGTTCAGATTCCAAAGTGTTGTAGAGCTTACAATGGA
ATATCTG
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