FC930011
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PABP_SCHPO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 5.198e-16 Identity = 53/172 (30.81%), Postives = 89/172 (51.74%), Query Frame = 2 Query: 122 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616 P A T S+YVG + P VT A+L E+F+S GP+ ++ + + Y +V++ + A+ LN I G+P ++ W SQR+ + G NVF+ +L P + + L FS F +V + G ++G+GFV F + E A +AI +NG L ++++ Sbjct: 72 PSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMW----SQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVA-VDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKV 238 HSP 2 Score: 77.7962 bits (190), Expect = 6.354e-14 Identity = 50/193 (25.91%), Postives = 89/193 (46.11%), Query Frame = 2 Query: 149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH---------------FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXKGATSGDEKQVQI 673 +VY+ N+ ++T ++F G + L+K +GFV+Y + A A+ LN + G+ + V A +RE+ N+F+ +L EV D L A FS F T + A++M ++ G+S+GFGFV + E+A A+ ++N + L + + A + + + QI Sbjct: 262 NVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQI 453 HSP 3 Score: 69.707 bits (169), Expect = 1.730e-11 Identity = 46/171 (26.90%), Postives = 83/171 (48.54%), Query Frame = 2 Query: 149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT-----SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXK 637 +V++ N+ P + N L + FS+ G + CK+ + + YGFV + SA AI +NG + + + V + +R+ + NV++ +L E+T+ F F + ++ Q + RGFGFV++ N E AQ A+++LN K +++ A K Sbjct: 169 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQND-KPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQK 338
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PABP_LODEL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Lodderomyces elongisporus GN=PAB1 PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.198e-16 Identity = 53/168 (31.55%), Postives = 84/168 (50.00%), Query Frame = 2 Query: 134 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616 A S+YVG ++P V A L E+FS G + ++ + K Y +V+Y AI LN + G+P ++ W SQR+ + SG N+F+ +L P + + L FS F +V G+S+ FGFV + +E AQ+AI +NG L +R++ Sbjct: 63 AENSASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAIEELNYTPVEGRPCRIMW----SQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSVKVA-TDDLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREV 225 HSP 2 Score: 69.3218 bits (168), Expect = 2.260e-11 Identity = 46/182 (25.27%), Postives = 84/182 (46.15%), Query Frame = 2 Query: 149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT-----SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXKGATSGDEKQVQ 670 ++++ N+HP + N L + FS+ G + K+ D +GFV Y +A AI ++NG + + + V + RE + + N++V ++ T+ F+ F + + G+S+GFGFV+F E A A+ +LN K + ++I A K +E + Q Sbjct: 156 NIFIKNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSI-YLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQ 336
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PABP_CANAL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida albicans GN=PAB1 PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 6.788e-16 Identity = 53/168 (31.55%), Postives = 85/168 (50.60%), Query Frame = 2 Query: 134 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616 A S+YVG ++P V A L E+FS G + ++ + K Y +V+Y AI LN I G+P ++ W SQR+ + SG N+F+ +L P + + L FS F +V + G+S+ FGFV + E A++AI ++NG L +R++ Sbjct: 48 AENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMW----SQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVA-TDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREV 210 HSP 2 Score: 71.2478 bits (173), Expect = 5.947e-12 Identity = 45/171 (26.32%), Postives = 82/171 (47.95%), Query Frame = 2 Query: 149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT-----SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXK 637 ++++ N+HP + N L + FS+ G + CK+ + +GFV Y +A AI +NG + + + V + RE + N++V ++ ++ + FS F + + Q G+S+GFGFV+F + E A A+ +LN K + ++I A K Sbjct: 141 NIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQD-GKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQK 310 HSP 3 Score: 68.1662 bits (165), Expect = 5.034e-11 Identity = 50/174 (28.74%), Postives = 80/174 (45.98%), Query Frame = 2 Query: 149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHF--------------NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616 ++YV NI + +++FS G + L K +GFV++ D SA A+ LN + I GQ I V A +R E+ + N+FV +L + L F F T + A+VM + G+S+GFGFV F E+A AI ++N + + + + Sbjct: 234 NIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDE-AGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPL 406
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PABPX_ARATH (Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 6.788e-16 Identity = 53/160 (33.12%), Postives = 83/160 (51.88%), Query Frame = 2 Query: 149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616 S+YVG++HP VT +L + F+ L +L K S YG+ ++ R+ A LAI N + G+ I+V W+ + +G NVFV +L VT+A L F F +V + G+SRG+GFV F ++ A +AI LN + +++I Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDAR-RNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVAT-LEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEI 182
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: ELAV2_PONAB (ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15 Identity = 58/170 (34.12%), Postives = 88/170 (51.76%), Query Frame = 2 Query: 98 PILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 595 P+ SGN D+ T ++ V + +T L+ +F S G +E CKL++ YGFV+Y D + A AI TLNG + + IKV++A SS + N++V L +T L FS + +R++ Q TG SRG GF+ F + +A+ AI LNG+ Sbjct: 28 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: ELAV2_MOUSE (ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15 Identity = 58/170 (34.12%), Postives = 88/170 (51.76%), Query Frame = 2 Query: 98 PILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 595 P+ SGN D+ T ++ V + +T L+ +F S G +E CKL++ YGFV+Y D + A AI TLNG + + IKV++A SS + N++V L +T L FS + +R++ Q TG SRG GF+ F + +A+ AI LNG+ Sbjct: 28 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: ELAV2_HUMAN (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15 Identity = 58/170 (34.12%), Postives = 88/170 (51.76%), Query Frame = 2 Query: 98 PILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 595 P+ SGN D+ T ++ V + +T L+ +F S G +E CKL++ YGFV+Y D + A AI TLNG + + IKV++A SS + N++V L +T L FS + +R++ Q TG SRG GF+ F + +A+ AI LNG+ Sbjct: 28 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.512e-15 Identity = 58/171 (33.92%), Postives = 87/171 (50.88%), Query Frame = 2 Query: 98 PILSGNLPPRFDASTCRSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 595 P+ SGN ++ + N PQ +T L+ +F S G +E CKL++ YGFV+Y D + A AI TLNG + + IKV++A SS + N++V L +T L FS + +R++ Q TG SRG GF+ F + +A+ AI LNG+ Sbjct: 28 PVDSGN------TEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PABP_YARLI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia lipolytica GN=PAB1 PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15 Identity = 47/160 (29.38%), Postives = 83/160 (51.88%), Query Frame = 2 Query: 149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616 S+YVG + P VT A+L E+F+ GP+ ++ I + Y +V++ ++ A+ LN I +P ++ W+ T G N+++ +L P + + L FS F ++ + G SRGFGFV + + E A+SAI +NG L ++++ Sbjct: 47 SLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALEELNYSPIKERPCRIMWSQRDPALRKT-GAGNIYIKNLDPAIDNKALHDTFSAFGQILSCKIATDE-FGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKV 204
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2) HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15 Identity = 50/163 (30.67%), Postives = 86/163 (52.76%), Query Frame = 2 Query: 149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616 S+YVG ++P V ALL E+FS G + ++ + K Y +V++ + AI LN + G+P ++ W SQR+ + +G N+F+ +L P + + L FS F +V + G+S+ FGFV + E A++AI ++NG L +R++ Sbjct: 59 SLYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEELNYSLVDGRPCRIMW----SQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVA-TDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREV 216 HSP 2 Score: 82.8037 bits (203), Expect = 1.975e-15 Identity = 52/178 (29.21%), Postives = 88/178 (49.44%), Query Frame = 2 Query: 149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT-----SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXKGATSGDE 658 ++++ N+HP + N L + FS+ G + CK+ + +GFV Y +A AI +NG + + + V + RE + NV+V +L+PEV +A F F + + Q+ G+SRGFGFV+F N E A +A+ ++N K + +++ A K DE Sbjct: 147 NIFIKNLHPAIDNKALHDTFSAFGRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKFEEMKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQE-GKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDE 323 HSP 3 Score: 77.411 bits (189), Expect = 8.298e-14 Identity = 54/174 (31.03%), Postives = 86/174 (49.43%), Query Frame = 2 Query: 149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA-------------YASSQREDTSGH--FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616 +VYV N+ P+V NA +E+F GP+ L + +GFV++ + SA A+ +N + I GQ + V A Y S++ E S + N+FV +L + L F F T + ARVM G+S+GFGFV F + E+A AI ++N + + + + Sbjct: 240 NVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDD-AGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPL 412 The following BLAST results are available for this feature:
BLAST of FC930011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 121
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930011 ID=FC930011; Name=FC930011; organism=Citrus clementina; type=EST; length=707bpback to top |