FC930011

Overview
NameFC930011
Unique NameFC930011
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 55/192 (28.65%), Postives = 93/192 (48.44%), Query Frame = 2
Query:   68 PSLLAAPQIEPILSGNLPPR--FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            P+   AP  E    GN   R   DA+   S+YVG + P VT A+L E+FS  G +   ++    + +    Y +V++ +      A+  LN   I  +P ++ W    SQR+     +G  N+F+ +L   + +  L   F+ F      +V   + TG S G+GFV +   E A++AI  +NG  L ++++
Sbjct:   19 PASTPAPAAEQPAVGNGEQRNNADAANNTSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQLNYSLIRNRPCRIMW----SQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVATNE-TG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKV 204          

HSP 2 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 47/157 (29.94%), Postives = 82/157 (52.23%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTD---ATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLN 589
            ++++ N+   + N  L + F++ G +  CK+   +  S  YGFV Y    +A  AI  +NG  +  + + V       +R    E+T  +F NV+  ++ PEVTD     LF  F    +C    V+   + G+S+GFGFV+F +  +AQ A+++L+
Sbjct:  136 NIFIKNLDAGIDNKALHDTFAAFGNILSCKVATNETGSLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEETRANFTNVYAKNVDPEVTDDEFEKLFTKFGKITSC----VLQRDEDGKSKGFGFVNFEDHNEAQKAVDELH 288          

HSP 3 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 50/193 (25.91%), Postives = 89/193 (46.11%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH---------------FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXKGATSGDEKQVQI 673
            +VY  N+ P+VT+   +++F+  G +  C L + +      +GFV++ D   A  A+  L+     GQ + V  A   S+RE+                    N+++ ++     D  L   F+ F   +  ++M    +G SRGFGFV +   E+A  A++++NGK L NR +    A +      + + QI
Sbjct:  228 NVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLREEFAPFGAITSCKIMRAP-SGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQRKDVRRQQLEAQI 419          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 51/149 (34.23%), Postives = 77/149 (51.68%), Query Frame = 2
Query:  164 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 595
            N  PQ +T    + +F S G +E CKL++         YGFV+Y D   A  AI TLNG  +  + IKV++A  SS     +   N++V  L   ++   +   FS +     +R++  Q TG SRG GF+ F  + +A+ AI  LNG+
Sbjct:   44 NYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 51/177 (28.81%), Postives = 97/177 (54.80%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFG----QPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACF-SVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGK-WLGNRQIRCNWAXKGAT 646
            S+++G++ P +    +   F++ G  +   K+I+       + Y FV++ D  +A   +  +NG+ + G    +  K+N+A    Q  D S  +++FVGDL+P+V D  L+  F  V+P+C   +V+  Q TG S+G+GFV F ++ + + A+ +  G   LG++ +R + A   A+
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQ-PDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKAS 178          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 51/177 (28.81%), Postives = 97/177 (54.80%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFG----QPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACF-SVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGK-WLGNRQIRCNWAXKGAT 646
            S+++G++ P +    +   F++ G  +   K+I+       + Y FV++ D  +A   +  +NG+ + G    +  K+N+A    Q  D S  +++FVGDL+P+V D  L+  F  V+P+C   +V+  Q TG S+G+GFV F ++ + + A+ +  G   LG++ +R + A   A+
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQ-PDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVAIPKAS 178          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 53/172 (30.81%), Postives = 86/172 (50.00%), Query Frame = 2
Query:  152 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTS--------GHFN----VFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 619
            ++VGN+     +A L E+F   G +E  ++I    +     +GFV    +     A    NG  + G+ ++VN      +RE++S        G F+    V+VG+L+  V    L   FS      DA+V++ + +GRSRGFGFV++ + E+  +AI  L+G  L  R IR
Sbjct:   89 IFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIR 260          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: RBM39_PONAB (RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 55/192 (28.65%), Postives = 92/192 (47.92%), Query Frame = 2
Query:   83 APQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS----SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 619
            +P  EPI   NL P  +    R+V+   +  ++    L+E FS+ G +   ++I    S       +V++ D  S  LAI  L G+ + G PI V  + A   R         + ++G   ++VG L   +T+  L   F  F      ++M   +TGRS+G+GF++F + E A+ A+  LNG  L  R ++
Sbjct:  136 SPVREPI--DNLTP--EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 322          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 55/192 (28.65%), Postives = 92/192 (47.92%), Query Frame = 2
Query:   83 APQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS----SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 619
            +P  EPI   NL P  +    R+V+   +  ++    L+E FS+ G +   ++I    S       +V++ D  S  LAI  L G+ + G PI V  + A   R         + ++G   ++VG L   +T+  L   F  F      ++M   +TGRS+G+GF++F + E A+ A+  LNG  L  R ++
Sbjct:  136 SPVREPI--DNLTP--EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSVRLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 322          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: RBM39_HUMAN (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 55/192 (28.65%), Postives = 92/192 (47.92%), Query Frame = 2
Query:   83 APQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS----SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 619
            +P  EPI   NL P  +    R+V+   +  ++    L+E FS+ G +   ++I    S       +V++ D  S  LAI  L G+ + G PI V  + A   R         + ++G   ++VG L   +T+  L   F  F      ++M   +TGRS+G+GF++F + E A+ A+  LNG  L  R ++
Sbjct:  136 SPVREPI--DNLTP--EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 322          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 48/163 (29.45%), Postives = 86/163 (52.76%), Query Frame = 2
Query:  149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616
            S+YVG++   V  + L + FSS GP+   ++    I +    Y +V++     A  A+ T+N   +  +PI++ W    SQR+ +   SG  NVF+ +L   + +  ++  FS F      +V   +K G S+G+GFV F  +E A ++I+ +NG  L  +++
Sbjct:    3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDLVRNKPIRIMW----SQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEK-GNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKV 160          

HSP 2 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 48/169 (28.40%), Postives = 84/169 (49.70%), Query Frame = 2
Query:  122 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH-----FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG 604
            P    S   +V++ N+   + N  + + FS+ G +  CK+   +K +   YGFV +    +A  +I  +NG  + G+ + V       +RE   G       NV+V + + +  D  L   F  +   +  +VM  ++ G+S+GFGFV+F   E A++A+  LNGK +G
Sbjct:   82 PSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMG 249          
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 51/149 (34.23%), Postives = 77/149 (51.68%), Query Frame = 2
Query:  164 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 595
            N  PQ +T    + +F S G +E CKL++         YGFV+Y D   A  AI TLNG  +  + IKV++A  SS     +   N++V  L   ++   +   FS +     +R++  Q TG SRG GF+ F  + +A+ AI  LNG+
Sbjct:   44 NYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189          
The following BLAST results are available for this feature:
BLAST of FC930011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
PABP_USTMA2.414e-1328.65Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ELAV3_MOUSE2.414e-1334.23ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1... [more]
TSAP1_HUMAN3.153e-1328.81tRNA selenocysteine 1-associated protein 1 OS=Homo... [more]
TSAP1_BOVIN3.153e-1328.81tRNA selenocysteine 1-associated protein 1 OS=Bos ... [more]
ROC1_NICSY4.118e-1330.8129 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
RBM39_PONAB4.118e-1328.65RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE... [more]
RBM39_MOUSE4.118e-1328.65RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE... [more]
RBM39_HUMAN4.118e-1328.65RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE... [more]
PABP_DROME4.118e-1329.45Polyadenylate-binding protein OS=Drosophila melano... [more]
ELAV3_HUMAN4.118e-1334.23ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC34002G12EF PostHarvC1 Citrus clementina cDNA clone C34002G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930011 ID=FC930011; Name=FC930011; organism=Citrus clementina; type=EST; length=707bp
GACGATGCAGCAGCATAGGCTGAAGCAACAAACAATGATGCAGCAGCAGT
CTTTATACCAATACCATCCCAGTCTCTTAGCTGCTCCTCAGATAGAGCCT
ATCTTGAGTGGAAATCTGCCTCCGCGATTTGATGCAAGTACATGCCGCAG
CGTGTATGTTGGAAACATTCATCCTCAGGTTACAAATGCCCTGCTTCAAG
AGGTTTTTTCAAGTACCGGTCCCCTTGAAGGATGCAAGCTCATTAAAAAA
GATAAGTCATCCTATGGCTTTGTGGACTACTTTGATCGCAGATCAGCTGC
CCTTGCAATTGTGACTCTTAATGGAAGGCACATATTTGGACAACCTATTA
AAGTAAACTGGGCTTATGCTAGCAGCCAGAGAGAGGACACATCAGGTCAT
TTCAACGTTTTTGTTGGTGATCTTAGCCCTGAAGTTACAGATGCTACTTT
GTTTGCGTGCTTCTCTGTGTTTCCTACTTGTTCGGATGCAAGGGTTATGT
GGGGCCAAAAGACTGGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTTCGG
AATCAGGAGGATGCCCAAAGTGCAATAAATGACTTAAATGGGAAGTGGCT
TGGTAATAGACAGATTCGGTGCAACTGGGCTGNCAAAGGTGCTACCTCTG
GTGATGAAAAGCAAGTTCAGATTCCAAAGTGTTGTAGAGCTTACAATGGA
ATATCTG
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