FC930011
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13 Identity = 55/192 (28.65%), Postives = 93/192 (48.44%), Query Frame = 2 Query: 68 PSLLAAPQIEPILSGNLPPR--FDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616 P+ AP E GN R DA+ S+YVG + P VT A+L E+FS G + ++ + + Y +V++ + A+ LN I +P ++ W SQR+ +G N+F+ +L + + L F+ F +V + TG S G+GFV + E A++AI +NG L ++++ Sbjct: 19 PASTPAPAAEQPAVGNGEQRNNADAANNTSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQLNYSLIRNRPCRIMW----SQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVATNE-TG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKV 204 HSP 2 Score: 73.559 bits (179), Expect = 1.198e-12 Identity = 47/157 (29.94%), Postives = 82/157 (52.23%), Query Frame = 2 Query: 149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS--YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTD---ATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLN 589 ++++ N+ + N L + F++ G + CK+ + S YGFV Y +A AI +NG + + + V +R E+T +F NV+ ++ PEVTD LF F +C V+ + G+S+GFGFV+F + +AQ A+++L+ Sbjct: 136 NIFIKNLDAGIDNKALHDTFAAFGNILSCKVATNETGSLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEETRANFTNVYAKNVDPEVTDDEFEKLFTKFGKITSC----VLQRDEDGKSKGFGFVNFEDHNEAQKAVDELH 288 HSP 3 Score: 72.0182 bits (175), Expect = 3.486e-12 Identity = 50/193 (25.91%), Postives = 89/193 (46.11%), Query Frame = 2 Query: 149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH---------------FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAXKGATSGDEKQVQI 673 +VY N+ P+VT+ +++F+ G + C L + + +GFV++ D A A+ L+ GQ + V A S+RE+ N+++ ++ D L F+ F + ++M +G SRGFGFV + E+A A++++NGK L NR + A + + + QI Sbjct: 228 NVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLREEFAPFGAITSCKIMRAP-SGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQRKDVRRQQLEAQI 419
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13 Identity = 51/149 (34.23%), Postives = 77/149 (51.68%), Query Frame = 2 Query: 164 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 595 N PQ +T + +F S G +E CKL++ YGFV+Y D A AI TLNG + + IKV++A SS + N++V L ++ + FS + +R++ Q TG SRG GF+ F + +A+ AI LNG+ Sbjct: 44 NYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13 Identity = 51/177 (28.81%), Postives = 97/177 (54.80%), Query Frame = 2 Query: 149 SVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFG----QPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACF-SVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGK-WLGNRQIRCNWAXKGAT 646 S+++G++ P + + F++ G + K+I+ + Y FV++ D +A + +NG+ + G + K+N+A Q D S +++FVGDL+P+V D L+ F V+P+C +V+ Q TG S+G+GFV F ++ + + A+ + G LG++ +R + A A+ Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQ-PDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKAS 178
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13 Identity = 51/177 (28.81%), Postives = 97/177 (54.80%), Query Frame = 2 Query: 149 SVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFG----QPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACF-SVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGK-WLGNRQIRCNWAXKGAT 646 S+++G++ P + + F++ G + K+I+ + Y FV++ D +A + +NG+ + G + K+N+A Q D S +++FVGDL+P+V D L+ F V+P+C +V+ Q TG S+G+GFV F ++ + + A+ + G LG++ +R + A A+ Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQ-PDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVAIPKAS 178
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13 Identity = 53/172 (30.81%), Postives = 86/172 (50.00%), Query Frame = 2 Query: 152 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTS--------GHFN----VFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 619 ++VGN+ +A L E+F G +E ++I + +GFV + A NG + G+ ++VN +RE++S G F+ V+VG+L+ V L FS DA+V++ + +GRSRGFGFV++ + E+ +AI L+G L R IR Sbjct: 89 IFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIR 260
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: RBM39_PONAB (RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13 Identity = 55/192 (28.65%), Postives = 92/192 (47.92%), Query Frame = 2 Query: 83 APQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS----SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 619 +P EPI NL P + R+V+ + ++ L+E FS+ G + ++I S +V++ D S LAI L G+ + G PI V + A R + ++G ++VG L +T+ L F F ++M +TGRS+G+GF++F + E A+ A+ LNG L R ++ Sbjct: 136 SPVREPI--DNLTP--EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 322
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13 Identity = 55/192 (28.65%), Postives = 92/192 (47.92%), Query Frame = 2 Query: 83 APQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS----SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 619 +P EPI NL P + R+V+ + ++ L+E FS+ G + ++I S +V++ D S LAI L G+ + G PI V + A R + ++G ++VG L +T+ L F F ++M +TGRS+G+GF++F + E A+ A+ LNG L R ++ Sbjct: 136 SPVREPI--DNLTP--EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSVRLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 322
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: RBM39_HUMAN (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13 Identity = 55/192 (28.65%), Postives = 92/192 (47.92%), Query Frame = 2 Query: 83 APQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS----SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 619 +P EPI NL P + R+V+ + ++ L+E FS+ G + ++I S +V++ D S LAI L G+ + G PI V + A R + ++G ++VG L +T+ L F F ++M +TGRS+G+GF++F + E A+ A+ LNG L R ++ Sbjct: 136 SPVREPI--DNLTP--EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 322
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3) HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13 Identity = 48/163 (29.45%), Postives = 86/163 (52.76%), Query Frame = 2 Query: 149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616 S+YVG++ V + L + FSS GP+ ++ I + Y +V++ A A+ T+N + +PI++ W SQR+ + SG NVF+ +L + + ++ FS F +V +K G S+G+GFV F +E A ++I+ +NG L +++ Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDLVRNKPIRIMW----SQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEK-GNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKV 160 HSP 2 Score: 74.3294 bits (181), Expect = 7.025e-13 Identity = 48/169 (28.40%), Postives = 84/169 (49.70%), Query Frame = 2 Query: 122 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH-----FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLG 604 P S +V++ N+ + N + + FS+ G + CK+ +K + YGFV + +A +I +NG + G+ + V +RE G NV+V + + + D L F + + +VM ++ G+S+GFGFV+F E A++A+ LNGK +G Sbjct: 82 PSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMG 249
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3) HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13 Identity = 51/149 (34.23%), Postives = 77/149 (51.68%), Query Frame = 2 Query: 164 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 595 N PQ +T + +F S G +E CKL++ YGFV+Y D A AI TLNG + + IKV++A SS + N++V L ++ + FS + +R++ Q TG SRG GF+ F + +A+ AI LNG+ Sbjct: 44 NYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189 The following BLAST results are available for this feature:
BLAST of FC930011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 121
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930011 ID=FC930011; Name=FC930011; organism=Citrus clementina; type=EST; length=707bpback to top |