FC930011
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13 Identity = 58/182 (31.87%), Postives = 86/182 (47.25%), Query Frame = 2 Query: 131 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA--------YASSQREDTS---GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 631 D R +YVGNI + N L+ + G +E +++ S +GFV A I LN I G+ IKVN A++Q ED+ + V++G+L+ VT+ L FS A+V T +S GFGFVSF ++E+ ++AI LN L ++IR N A Sbjct: 79 DGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA 260
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PABP_NEUCR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neurospora crassa GN=pab-1 PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13 Identity = 45/160 (28.12%), Postives = 76/160 (47.50%), Query Frame = 2 Query: 149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616 S+YVG + P VT A+L E+FS G + ++ + + Y +V+Y A+ LN I G+P ++ W+ T G N+F+ +L + + L F+ F +V + G S+G+GFV + E A AI +NG L +++ Sbjct: 61 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKT-GAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEH-GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKV 218 HSP 2 Score: 73.559 bits (179), Expect = 1.198e-12 Identity = 47/157 (29.94%), Postives = 83/157 (52.87%), Query Frame = 2 Query: 149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 595 ++++ N+ + N L + F++ G + CK+ + + + YGFV Y +A+ AI +NG + + + V R E+ +F NV+V +++ EVTD F+ F + + + Q+ G+SRGFGFV+F E A A+++LNGK Sbjct: 149 NIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQE-GKSRGFGFVNFTTHEAAAQAVDELNGK 304
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: TSAP1_RAT (tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus GN=Trnau1ap PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13 Identity = 51/177 (28.81%), Postives = 96/177 (54.24%), Query Frame = 2 Query: 149 SVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFG----QPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACF-SVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGK-WLGNRQIRCNWAXKGAT 646 S+++G++ P + + F++ G + K+I+ + Y FV++ D +A + +NG+ + G + K+N+A Q D S +++FVGDL+P+V D L+ F V+P+C +V+ Q TG S+G+GFV F ++ + + A+ + G LG + +R + A A+ Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQ-PDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKAS 178
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13 Identity = 50/177 (28.25%), Postives = 96/177 (54.24%), Query Frame = 2 Query: 149 SVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFG----QPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACF-SVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGK-WLGNRQIRCNWAXKGAT 646 S+++G++ P + + F++ G + K+I+ + Y FV++ D +A + +NG+ + G + K+N+ Q D S +++FVGDL+P+V D L+ F V+P+C +V+ Q TG S+G+GFV F ++ + + A+ + G LG++ +R + A A+ Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYVTYGKQ-PDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKAS 178
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13 Identity = 54/169 (31.95%), Postives = 87/169 (51.48%), Query Frame = 2 Query: 152 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLI---KKDKS-SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH-----FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 631 ++VGN+ V + L +F G +E ++I + D+S +GFV A A+ N + G+ + VN A R + + F V+VG+L +V + L FS +ARV++ ++TGRSRGFGFV+ + ++ AI+ L+G+ L R IR N A Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13 Identity = 55/169 (32.54%), Postives = 85/169 (50.30%), Query Frame = 2 Query: 152 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLI---KKDKS-SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQRE-----DTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 631 ++VGN+ V + L +F + G +E ++I + D+S +GFV A A+ LNG + G+ + VN A E D V+VG+L +V + L FS ARV+ ++TGRSRGFGFV+ ++ + AI L+G+ L R +R N A Sbjct: 57 LFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVA 225
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: ELAV1_XENTR (ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13 Identity = 52/154 (33.77%), Postives = 80/154 (51.95%), Query Frame = 2 Query: 146 RSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNG 592 R+ + N PQ +T L+ +FSS G +E KLI+ + YGFV+Y + + A AI TLNG + + IKV+ A SS+ + N+++ L +T + F F ++RV+ Q TG SRG F+ F + +A+ AI NG Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSVARPSSESIKDA---NLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: ELAV1_MOUSE (ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13 Identity = 52/154 (33.77%), Postives = 79/154 (51.30%), Query Frame = 2 Query: 146 RSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNG 592 R+ + N PQ +T L+ +FSS G +E KLI+ + YGFV+Y + A AI TLNG + + IKV++A SS + N+++ L +T + FS F ++RV+ Q TG SRG F+ F + +A+ AI G Sbjct: 19 RTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSS---EVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFIG 169
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: PABP_CHAGB (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Chaetomium globosum GN=PAB1 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12 Identity = 48/163 (29.45%), Postives = 78/163 (47.85%), Query Frame = 2 Query: 149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 616 S+YVG + P VT A+L E+FS G + ++ I + Y +V+Y A+ LN I G+P ++ W SQR+ +G NVF+ +L + + L F+ F +V + G S+G+GFV + E A AI +N L +++ Sbjct: 66 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKALEELNYTLIKGRPCRIMW----SQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVA-QDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKV 223 HSP 2 Score: 70.4774 bits (171), Expect = 1.014e-11 Identity = 50/160 (31.25%), Postives = 81/160 (50.62%), Query Frame = 2 Query: 149 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDAT---LFACFSVFPTCSDARVMWGQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 595 +V++ N+ + N L + F++ G + CK+ + + + YGFV Y +AA AI +N + + + V + R E+ +F N++V ++S E TD LFA + + S AR G+SRGFGFV+F E A A+ +LNGK Sbjct: 154 NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLAR----DSEGKSRGFGFVNFTTHECAAKAVEELNGK 309
BLAST of FC930011 vs. ExPASy Swiss-Prot
Match: ELAV3_XENTR (ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12 Identity = 54/170 (31.76%), Postives = 84/170 (49.41%), Query Frame = 2 Query: 101 ILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWGQKTGR-SRGFGFVSFRNQEDAQSAINDLNGK 595 IL+G D+ T ++ V + +T + +F S G +E CKL++ YGFV+Y D A AI TLNG + + IKV++A SS + N++V L + + FS + +R++ Q TG SRG GF+ F + +A+ AI LNG+ Sbjct: 22 ILNGTNGAADDSKT--NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSA---SIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGLNGQ 186 The following BLAST results are available for this feature:
BLAST of FC930011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 121
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930011 ID=FC930011; Name=FC930011; organism=Citrus clementina; type=EST; length=707bpback to top |