FC930012

Overview
NameFC930012
Unique NameFC930012
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930012 vs. ExPASy Swiss-Prot
Match: RFBF_SALTI (Glucose-1-phosphate cytidylyltransferase OS=Salmonella typhi GN=rfbF PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 51/184 (27.72%), Postives = 81/184 (44.02%), Query Frame = 1
Query:  163 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET---------EPLG-----------TAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKP 654
            MKA+IL GG GTRL   T+  PKP+VE   KP++ H ++     G+ + ++   Y+  V+  +   +   +        E          EP             T G L    + + DD  E F     D +++      I+FHKAHG +A++  T    P ++G +  +   G+V  F EKP
Sbjct:    1 MKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDD--EAFLFTYGDGVADLDIKATIDFHKAHGKKATL--TATFPPGRFGAL--DIQAGQVRSFQEKP 178          
BLAST of FC930012 vs. ExPASy Swiss-Prot
Match: GLMU_CLOD6 (Bifunctional protein glmU OS=Clostridium difficile (strain 630) GN=glmU PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 44/165 (26.67%), Postives = 86/165 (52.12%), Query Frame = 1
Query:  157 ITMKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEK 651
            +  KA+IL  G GTR++      PK + +   K M+ H I+  K  GV + V+ + ++ +V+       + KL  +II + +TE LGT   + +A++ + D+        ++ +I E     + E+H  +   A+++ T+V  P+ YG ++ ++  G + K VE+
Sbjct:    1 MNFKAIILAAGKGTRMKS---KYPKVIHKVCGKEMVNHIIDVSKKSGVKDTVVILGHEADVV-------KEKLAEEIIIAMQTEQLGTGHAVKMAKEYINDEDTIVVLCGDTPLIKEETLKRLFEYHIENKYHATVLTTRVGNPTGYGRIIRDKK-GDLLKIVEQ 154          
BLAST of FC930012 vs. ExPASy Swiss-Prot
Match: EI2BG_RAT (Translation initiation factor eIF-2B subunit gamma OS=Rattus norvegicus GN=Eif2b3 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 42/143 (29.37%), Postives = 75/143 (52.45%), Query Frame = 1
Query:  166 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSK 594
            +A+++  G G+R+  LT S+PKPL+   NKP+I + +  L+ VG  EV++      +V      EF+ KL   I+C  +   +GTA  L     KL  D      VL  D+I++    E+++  +A+    ++++ K  E ++
Sbjct:    4 QAVVMAVGGGSRMTDLTSSIPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVTT--KDVQKALCAEFKMKLKPDIVCIPDEADMGTADSLRHIYPKLKTDV----LVLGCDLITDVALHEVVDLFRAYDASLAMLMRKGQESTE 140          
BLAST of FC930012 vs. ExPASy Swiss-Prot
Match: RFBF_SALTY (Glucose-1-phosphate cytidylyltransferase OS=Salmonella typhimurium GN=rfbF PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.303e-11
Identity = 51/184 (27.72%), Postives = 81/184 (44.02%), Query Frame = 1
Query:  163 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET---------EPLG-----------TAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKP 654
            MKA+IL GG GTRL   T+  PKP+VE   KP++ H ++     G+ + ++   Y+  V+  +   +   +        E          EP             T G L    + + DD  E F     D +++      I+FHKAHG +A++  T    P ++G +  +   G+V  F EKP
Sbjct:    1 MKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDD--EAFLFTYGDGVADLDIKATIDFHKAHGKKATL--TATFPPGRFGAL--DIRAGQVRSFQEKP 178          
BLAST of FC930012 vs. ExPASy Swiss-Prot
Match: GLMU_META3 (Bifunctional protein glmU OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=Maeo_0642 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.223e-11
Identity = 49/167 (29.34%), Postives = 86/167 (51.50%), Query Frame = 1
Query:  163 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPM---ILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKP 654
            M A+IL  G GTRL PLT ++PKP++     P+   I+++I+ L    V  + L + Y+ E+++N  K  +     KI   ++T+  GT   + +A++ +  D    F V+N D+I +     ++        +  I + +VD PS +GV+V +     +E   EKP
Sbjct:    1 MDAVILCAGKGTRLMPLTENIPKPMLPVGGAPILERIINKIDKL----VENIYLIVKYEKEIIINHFKNND-----KIKFIEQTDIDGTGYAVLMAKNHISGD----FLVINGDIIFDDDLTNIVN----DDVKNIITLNEVDNPSNFGVIVVDNQNNIIE-LQEKP 149          
BLAST of FC930012 vs. ExPASy Swiss-Prot
Match: EI2BG_HUMAN (Translation initiation factor eIF-2B subunit gamma OS=Homo sapiens GN=EIF2B3 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.223e-11
Identity = 40/137 (29.20%), Postives = 73/137 (53.28%), Query Frame = 1
Query:  166 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTK 576
            +A+++  G G+R+  LT S+PKPL+   NKP+I + +  L+ VG  EV++      +V      EF+ K+   I+C  +   +GTA  L     KL  D      VL+ D+I++    E+++  +A+    ++++ K
Sbjct:    4 QAVVMAVGGGSRMTDLTSSIPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVTT--RDVQKALCAEFKMKMKPDIVCIPDDADMGTADSLRYIYPKLKTDV----LVLSCDLITDVALHEVVDLFRAYDASLAMLMRK 134          
BLAST of FC930012 vs. ExPASy Swiss-Prot
Match: SPSI_BACSU (Spore coat polysaccharide biosynthesis protein spsI OS=Bacillus subtilis GN=spsI PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.903e-11
Identity = 50/166 (30.12%), Postives = 79/166 (47.59%), Query Frame = 1
Query:  163 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEF--EAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKP 654
            MK +IL GG G+RL PLT +V K L+     PMI   I  L+  G+ +++L    Q E M  F K      +LG+ I    +    G +  L+ A+        E F +L  D I E       E  +  G  A +++ +VD+P ++G+   +E   ++   +EKP
Sbjct:    1 MKGVILAGGNGSRLMPLTKAVNKHLLPVGPYPMIYWSIMKLQEAGIKDILLI--SQKEHMPQFYKLLGNGEELGVTITYQVQPAASGISDGLSYAKR---FTKKESFILLLGDNIFEDSLKPYTERFEQQGKGAKVLLKEVDDPERFGIAEIDEKNKRIRSIIEKP 161          
BLAST of FC930012 vs. ExPASy Swiss-Prot
Match: EI2BG_MACFA (Translation initiation factor eIF-2B subunit gamma OS=Macaca fascicularis GN=EIF2B3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.903e-11
Identity = 40/137 (29.20%), Postives = 73/137 (53.28%), Query Frame = 1
Query:  166 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTK 576
            +A+++  G G+R+  LT S+PKPL+   NKP+I + +  L+ VG  EV++      +V      EF+ K+   I+C  +   +GTA  L     KL  D      VL+ D+I++    E+++  +A+    ++++ K
Sbjct:    4 QAVVMAVGGGSRMTDLTSSIPKPLLPAGNKPLIWYPLNLLERVGFEEVIVVTT--RDVQKALCAEFKMKMKPDIVCIPDDADMGTADSLRYMYPKLKTDV----LVLSCDLITDVALHEVVDLFRAYDASLAMLMRK 134          
BLAST of FC930012 vs. ExPASy Swiss-Prot
Match: EI2BG_BOVIN (Translation initiation factor eIF-2B subunit gamma OS=Bos taurus GN=EIF2B3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.791e-11
Identity = 42/142 (29.58%), Postives = 76/142 (53.52%), Query Frame = 1
Query:  166 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAI--NYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDE 585
            +A+++  G G+R+  LT S+PKPL+   NKP+I + +  L+ VG  EV++    + Q  +  +F K    K+ + I+C  +   +GTA  L     KL  D      VL+ D+I++    E+++  +AH    ++++ K  E
Sbjct:    4 QAVVMAVGGGSRMTDLTSSIPKPLLPVGNKPLIWYPLNLLERVGFEEVIVITTKDVQKALCADFNK---MKMKLDIVCIPDEADMGTADSLRHIYQKLKTDV----LVLSCDLITDVALHEVVDLFRAHDASLAMLMRKGQE 138          
The following BLAST results are available for this feature:
BLAST of FC930012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
RFBF_SALTI9.977e-1227.72Glucose-1-phosphate cytidylyltransferase OS=Salmon... [more]
GLMU_CLOD69.977e-1226.67Bifunctional protein glmU OS=Clostridium difficile... [more]
EI2BG_RAT9.977e-1229.37Translation initiation factor eIF-2B subunit gamma... [more]
RFBF_SALTY1.303e-1127.72Glucose-1-phosphate cytidylyltransferase OS=Salmon... [more]
GLMU_META32.223e-1129.34Bifunctional protein glmU OS=Methanococcus aeolicu... [more]
EI2BG_HUMAN2.223e-1129.20Translation initiation factor eIF-2B subunit gamma... [more]
SPSI_BACSU2.903e-1130.12Spore coat polysaccharide biosynthesis protein sps... [more]
EI2BG_MACFA2.903e-1129.20Translation initiation factor eIF-2B subunit gamma... [more]
EI2BG_BOVIN3.791e-1129.58Translation initiation factor eIF-2B subunit gamma... [more]

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Properties
Property NameValue
Genbank descriptionC34002H01EF PostHarvC1 Citrus clementina cDNA clone C34002H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930012 ID=FC930012; Name=FC930012; organism=Citrus clementina; type=EST; length=699bp
GAGACAACAAAAGCAAAGCAAAAGCGAAGCGCGCGAAGCTCGCCTCATCC
GTTGACTGAGCTGTCGGTCCCGAGTCACGACTCGCGACTCTTGTTTTTGA
ACTCAGTTGTTTGCCGTTCGGATCCGGTCTTAATTAAAGGATAAAGCAGG
CTCCGTATCACAATGAAGGCACTTATTCTTGTTGGAGGGTTCGGAACACG
GTTGAGGCCGTTGACGCTTAGTGTCCCTAAGCCACTTGTTGAATTTGCTA
ACAAACCCATGATCCTGCATCAGATAGAGGCCCTTAAGGCAGTTGGAGTG
ACTGAAGTAGTTTTGGCTATTAACTACCAGCCAGAGGTGATGTTGAACTT
TTTGAAGGAATTTGAAGCAAAGCTTGGGATCAAGATCATCTGCTCACAAG
AGACTGAGCCACTGGGCACTGCTGGTCCTCTGGCTCTGGCTAGAGACAAA
TTGATTGACGATACTGGTGAGCCATTTTTCGTCCTTAACAGTGATGTTAT
TAGTGAGTACCCATTTGCAGAAATGATTGAATTCCACAAAGCACATGGAG
GAGAGGCCTCCATCATGGTAACCAAGGTGGATGAGCCATCAAAATATGGT
GTGGTGGTTACGGAAGAGTCTACTGGAAAAGTTGAGAAATTCGTTGAGAA
ACCCTAATTATTTGTTGGTAACAAAATTATGCTGGAATTTATCTTTTGA
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