FC930065

Overview
NameFC930065
Unique NameFC930065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: AL2C4_ARATH (Aldehyde dehydrogenase family 2 member C4 OS=Arabidopsis thaliana GN=ALDH2C4 PE=1 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 2.670e-41
Identity = 84/155 (54.19%), Postives = 108/155 (69.68%), Query Frame = 1
Query:  235 KVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAP-ADGPYHVQTLHEPIGVAGQIIPWNF 696
            ++ +T+L INGQF+D+ASGKTF T+DPR G+VI  +AEG+ EDV+ AV+AAR AFD GPWPR T +ER+K+I +FADL+E + +E+A L+  D GK F+     ++P T   FRY AG ADKI G T           TL EPIGV G IIPWNF
Sbjct:   16 EIKFTKLFINGQFIDAASGKTFETIDPRNGEVIATIAEGDKEDVDLAVNAARYAFDHGPWPRMTGFERAKLINKFADLIEENIEELAKLDAVDGGKLFQLGKYADIPATAGHFRYNAGAADKIHGETLKMTRQSLFGYTLKEPIGVVGNIIPWNF 170          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: ALDH2_PONAB (Aldehyde dehydrogenase, mitochondrial OS=Pongo abelii GN=ALDH2 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.487e-41
Identity = 87/175 (49.71%), Postives = 111/175 (63.43%), Query Frame = 1
Query:  175 GYSTVSSAAAAAEDPITPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            G   +S+AA  A        +V   Q+ IN ++ D+ S KTFPT++P TG+VI  VAEG+ EDV++AV AAR AF  G PW R  A  R +++ R ADL+ER    +AALET DNGKP+  S   ++ M  +  RYYAGWADK  G T P DG +   T HEP+GV GQIIPWNF
Sbjct:   13 GRRLLSAAATQAVPAPNQQPEVFCNQIFINNEWHDAVSRKTFPTVNPSTGEVICQVAEGDKEDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIPWNF 187          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: ALDH2_HUMAN (Aldehyde dehydrogenase, mitochondrial OS=Homo sapiens GN=ALDH2 PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 3.487e-41
Identity = 87/175 (49.71%), Postives = 111/175 (63.43%), Query Frame = 1
Query:  175 GYSTVSSAAAAAEDPITPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            G   +S+AA  A        +V   Q+ IN ++ D+ S KTFPT++P TG+VI  VAEG+ EDV++AV AAR AF  G PW R  A  R +++ R ADL+ER    +AALET DNGKP+  S   ++ M  +  RYYAGWADK  G T P DG +   T HEP+GV GQIIPWNF
Sbjct:   13 GRRLLSAAATQAVPAPNQQPEVFCNQIFINNEWHDAVSRKTFPTVNPSTGEVICQVAEGDKEDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIPWNF 187          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: ALDH2_MESAU (Aldehyde dehydrogenase, mitochondrial OS=Mesocricetus auratus GN=ALDH2 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.554e-41
Identity = 86/170 (50.59%), Postives = 110/170 (64.71%), Query Frame = 1
Query:  190 SSAAAAAEDPITPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            S+AA +A        +V   Q+ IN ++ D+ S KTFPT++P TG+VI  VAEG  EDV++AV AAR AF  G PW R  A +R +++ R ADL+ER    +AALET DNGKP+  S   ++ M  +  RYYAGWADK  G T P DG +   T HEP+GV GQIIPWNF
Sbjct:    1 SAAATSAVPAPNQQPEVFCNQIFINNEWHDAVSKKTFPTVNPSTGEVICQVAEGSKEDVDKAVKAARAAFQLGSPWRRMDASDRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIPWNF 170          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: ALDH2_RAT (Aldehyde dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Aldh2 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.947e-41
Identity = 85/171 (49.71%), Postives = 111/171 (64.91%), Query Frame = 1
Query:  187 VSSAAAAAEDPITPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            +S+AA +A        +V   Q+ IN ++ D+ S KTFPT++P TG+VI  VAEG  EDV++AV AA+ AF  G PW R  A +R +++ R ADL+ER    +AALET DNGKP+  S   ++ M  +  RYYAGWADK  G T P DG +   T HEP+GV GQIIPWNF
Sbjct:   19 LSAAATSAVPAPNQQPEVFCNQIFINNEWHDAVSKKTFPTVNPSTGEVICQVAEGNKEDVDKAVKAAQAAFQLGSPWRRMDASDRGRLLYRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIPWNF 189          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: ALDH4_BACSU (Putative aldehyde dehydrogenase dhaS OS=Bacillus subtilis GN=dhaS PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.499e-39
Identity = 75/149 (50.34%), Postives = 99/149 (66.44%), Query Frame = 1
Query:  250 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            +L I+G+FV SASG TF T +P TG+ +  + E +A DV++AV AARKAFD+G W   +   RS+++ + ADL+E H  E+A LET DNGKP  ++   ++P+     RYYAGW  KI G T P  G Y   T HEP+GV GQIIPWNF
Sbjct:   21 KLYIDGKFVPSASGATFDTPNPATGETLMTLYEAQAADVDKAVKAARKAFDQGEWRTMSPASRSRLMYKLADLMEEHKTELAQLETLDNGKPINETTNGDIPLAIEHMRYYAGWCTKITGQTIPVSGAYFNYTRHEPVGVVGQIIPWNF 169          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: AL1A2_HUMAN (Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2 PE=1 SV=3)

HSP 1 Score: 156.762 bits (395), Expect = 1.050e-37
Identity = 74/159 (46.54%), Postives = 104/159 (65.41%), Query Frame = 1
Query:  223 TPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGP-WPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            TP +++ YT++ IN ++ +S SG+ FP  +P TG+ +  V E +  D+++AV AAR AF  G  W R  A ER +++ + ADL+ER    +A +E+ + GKPF Q+   ++    + FRYYAGWADKI G+T P DG Y   T HEPIGV GQIIPWNF
Sbjct:   30 TPNLEIKYTKIFINNEWQNSESGRVFPVYNPATGEQVCEVQEADKADIDKAVQAARLAFSLGSVWRRMDASERGRLLDKLADLVERDRAVLATMESLNGGKPFLQAFYVDLQGVIKTFRYYAGWADKIHGMTIPVDGDYFTFTRHEPIGVCGQIIPWNF 188          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: ALDH_ENCBU (Aldehyde dehydrogenase OS=Enchytraeus buchholzi GN=ALDH PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.371e-37
Identity = 76/156 (48.72%), Postives = 104/156 (66.67%), Query Frame = 1
Query:  232 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRK-TAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            +KV++T++ IN +FVDS SGKTF T++P TG+ +  V EG+  D+++AV+AAR AF      RK  A +R +++ + ADL+E H  ++  LET DNGKPF  S   +  M  ++ RYYAG+ADKI G T PADG     T HEP+GV G I PWNF
Sbjct:   13 LKVEFTKIFINNEFVDSVSGKTFATINPSTGEKLAEVQEGDKADIDKAVAAARAAFKRDAEYRKHDASDRGRLLFKLADLIEAHRVQLRTLETLDNGKPFAMSYLGDTLMAQKVLRYYAGFADKIVGQTIPADGNVFCYTRHEPVGVVGAITPWNF 168          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: AL1A2_RAT (Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 6.804e-37
Identity = 73/159 (45.91%), Postives = 103/159 (64.78%), Query Frame = 1
Query:  223 TPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGP-WPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            TP +++ YT++ IN ++ +S SG+ FP  +P TG+ +  V E +  D+++AV AAR AF  G  W R  A ER +++ + ADL+ER    +A +E+ + GKPF Q+   ++    +  RYYAGWADKI G+T P DG Y   T HEPIGV GQIIPWNF
Sbjct:   30 TPNLEIKYTKIFINNEWQNSESGRVFPVCNPATGEQVCEVQEADKVDIDKAVQAARLAFSLGSVWRRMDASERGRLLDKLADLVERDRATLATMESLNGGKPFLQAFYIDLQGVIKTLRYYAGWADKIHGMTIPVDGDYFTFTRHEPIGVCGQIIPWNF 188          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: AL1A2_MOUSE (Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 6.804e-37
Identity = 73/159 (45.91%), Postives = 103/159 (64.78%), Query Frame = 1
Query:  223 TPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGP-WPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            TP +++ YT++ IN ++ +S SG+ FP  +P TG+ +  V E +  D+++AV AAR AF  G  W R  A ER +++ + ADL+ER    +A +E+ + GKPF Q+   ++    +  RYYAGWADKI G+T P DG Y   T HEPIGV GQIIPWNF
Sbjct:   30 TPNLEIKYTKIFINNEWQNSESGRVFPVCNPATGEQVCEVQEADKVDIDKAVQAARLAFSLGSVWRRMDASERGRLLDKLADLVERDRATLATMESLNGGKPFLQAFYIDLQGVIKTLRYYAGWADKIHGMTIPVDGDYFTFTRHEPIGVCGQIIPWNF 188          
The following BLAST results are available for this feature:
BLAST of FC930065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 295
Match NameE-valueIdentityDescription
AL2C4_ARATH2.670e-4154.19Aldehyde dehydrogenase family 2 member C4 OS=Arabi... [more]
ALDH2_PONAB3.487e-4149.71Aldehyde dehydrogenase, mitochondrial OS=Pongo abe... [more]
ALDH2_HUMAN3.487e-4149.71Aldehyde dehydrogenase, mitochondrial OS=Homo sapi... [more]
ALDH2_MESAU4.554e-4150.59Aldehyde dehydrogenase, mitochondrial OS=Mesocrice... [more]
ALDH2_RAT5.947e-4149.71Aldehyde dehydrogenase, mitochondrial OS=Rattus no... [more]
ALDH4_BACSU2.499e-3950.34Putative aldehyde dehydrogenase dhaS OS=Bacillus s... [more]
AL1A2_HUMAN1.050e-3746.54Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2... [more]
ALDH_ENCBU1.371e-3748.72Aldehyde dehydrogenase OS=Enchytraeus buchholzi GN... [more]
AL1A2_RAT6.804e-3745.91Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Al... [more]
AL1A2_MOUSE6.804e-3745.91Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34003D08EF PostHarvC1 Citrus clementina cDNA clone C34003D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930065 ID=FC930065; Name=FC930065; organism=Citrus clementina; type=EST; length=698bp
CACAAGAGAGGAGGAGAGGAAAAAAAAAAAAAGATAAAAATTAAAGTTGT
GATGGCTGCAAGAAGGATTCCGCTTTTGCTTTCACGTTCATTCACGTCTT
CTTCACCTACTCTGTTTTCAAGAGGGAGGGATTCTAGTTTGTGCAGAGCT
GCTGCTGCTGCTGCCGCCTCCTGCGGATACAGCACGGTTTCTTCTGCTGC
TGCTGCTGCTGAAGATCCAATTACTCCGCCTGTTAAAGTTGATTATACTC
AGCTTCTAATTAATGGACAATTTGTTGATTCTGCATCAGGCAAAACGTTT
CCCACATTAGACCCCAGGACTGGTGATGTGATTACTCATGTAGCTGAAGG
TGAGGCTGAAGACGTCAACCGAGCAGTTTCTGCTGCTCGCAAGGCATTTG
ATGAAGGACCGTGGCCTAGGAAGACTGCTTATGAAAGGTCAAAAATAATT
TTGCGCTTCGCTGATTTGCTGGAAAGGCATAATGATGAAATTGCAGCCCT
TGAGACTTGGGATAACGGGAAGCCATTCGAGCAGTCTGCCCAGACTGAAG
TACCAATGACCACGCGTTTATTCCGGTACTACGCTGGTTGGGCAGATAAG
ATTCAGGGTCTCACTGCTCCAGCTGATGGACCGTACCATGTGCAAACCTT
GCACGAACCAATTGGTGTAGCAGGTCAAATTATCCCATGGAACTTTCC
back to top