FC930065

Overview
NameFC930065
Unique NameFC930065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: AL1B1_BOVIN (Aldehyde dehydrogenase X, mitochondrial (Fragment) OS=Bos taurus GN=ALDH1B1 PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.676e-35
Identity = 81/168 (48.21%), Postives = 107/168 (63.69%), Query Frame = 1
Query:  196 AAAAAEDPITPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            +AAA   PI  P   D  QL I+ ++ D+ S KTFPT+ P TG+VI HVAEG+  DV+ A  AAR AF  G PW    A +R  ++   ADL+ER    +A+LE+ DNGKPF++S   ++    +++RY+AGWADK  G T P DG +   T HEP+GV  QIIPWNF
Sbjct:   15 SAAALPSPIPNPDIPD-NQLFISNKWHDAVSKKTFPTVSPATGEVIGHVAEGDWADVDLAAKAARAAFRLGSPWRWMDALKRGWLLNHLADLVERDCVYLASLESLDNGKPFQESYVLDLDEVIKVYRYFAGWADKWHGKTIPMDGEHFCFTRHEPVGVCCQIIPWNF 181          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: AL1A1_MACFA (Retinal dehydrogenase 1 OS=Macaca fascicularis GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 149.443 bits (376), Expect = 1.676e-35
Identity = 74/170 (43.53%), Postives = 107/170 (62.94%), Query Frame = 1
Query:  193 SAAAAAEDPITPP-VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            S++  ++ P+ P  +K+ YT++ IN ++ DS SGK FP  +P T + +  V EG+  DV++AV AAR+AF  G PW    A ER +++ + ADL+ER    +A +E+ + GK +  +   ++    +  RY AGWADKIQG T P DG +   T HEPIGV GQIIPWNF
Sbjct:    2 SSSGTSDLPVLPTDLKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNF 171          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: AL1A1_HORSE (Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1A1 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.189e-35
Identity = 72/156 (46.15%), Postives = 101/156 (64.74%), Query Frame = 1
Query:  232 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            +K  YT++ IN ++ DS SGK FP  +P T + +  V EG+ EDVN+AV+AAR+AF  G PW    A ER +++ + ADL+ER    +A +E+ + GK F  +   ++    +  RY AGWADKIQG T P+DG +   T HEP+GV GQI+PWNF
Sbjct:   15 LKFQYTKIFINNEWHDSVSGKKFPVFNPATEEKLCEVEEGDKEDVNKAVAAARQAFQIGSPWRTMDASERGRLLYKLADLVERDRLILATMESMNGGKLFSNAYLMDLGGCLKTLRYCAGWADKIQGRTIPSDGNFFTYTRHEPVGVCGQILPWNF 170          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: AL1A1_HUMAN (Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.859e-35
Identity = 72/156 (46.15%), Postives = 100/156 (64.10%), Query Frame = 1
Query:  232 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            +K+ YT++ IN ++ DS SGK FP  +P T + +  V EG+ EDV++AV AAR+AF  G PW    A ER +++ + ADL+ER    +A +E+ + GK +  +   ++    +  RY AGWADKIQG T P DG +   T HEPIGV GQIIPWNF
Sbjct:   16 LKIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNF 171          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: ALDH1_MACPR (Aldehyde dehydrogenase, cytosolic 1 OS=Macroscelides proboscideus GN=ALDH1 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.318e-35
Identity = 74/155 (47.74%), Postives = 99/155 (63.87%), Query Frame = 1
Query:  232 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWN 693
            +K+ +T+L IN ++ DS SGKTFP  +P T + I  V E + EDV++AV AAR+AF  G PW    A ER ++I + ADL+ER    +A LE+ + GK F  +   ++    ++ RY AGWADKIQG T P DG +   T HEPIGV GQI PWN
Sbjct:   16 IKIQHTKLFINNEWHDSVSGKTFPVFNPATEEKICEVEEADKEDVDKAVKAAREAFQMGSPWRTMDASERGQLIYKLADLIERDRLLLATLESINAGKIFASAYLMDLDYCIKVLRYCAGWADKIQGRTIPVDGEFFSYTRHEPIGVCGQIFPWN 170          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: AL1A2_TAEGU (Retinal dehydrogenase 2 OS=Taeniopygia guttata GN=ALDH1A2 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.086e-34
Identity = 71/156 (45.51%), Postives = 100/156 (64.10%), Query Frame = 1
Query:  232 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGP-WPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            +++ YT++ IN ++ +S SG+ FP  +P TG+ I  + E +  D ++AV AAR AF  G  W R  A ER  ++ + ADL+ER    +A +E+ ++GKPF Q+   ++    +  RYYAGWADKI G+T P DG Y   T HEPIGV GQIIPWNF
Sbjct:   33 LEIKYTKIFINNEWQNSESGRIFPVYNPATGEQICDIQEADKVDTDKAVRAARLAFSLGSVWRRMDASERGHLLDKLADLVERDRAILATMESLNSGKPFLQAFYVDLQGVIKTLRYYAGWADKIHGMTIPVDGDYFTFTRHEPIGVCGQIIPWNF 188          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: AL1A2_CHICK (Retinal dehydrogenase 2 OS=Gallus gallus GN=ALDH1A2 PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.086e-34
Identity = 70/156 (44.87%), Postives = 101/156 (64.74%), Query Frame = 1
Query:  232 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGP-WPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            +++ +T++ IN ++ +S SG+ FP  +P TG+ I  + E +  D ++AV AAR AF  G  W R  A ER +++ + ADL+ER    +A +E+ ++GKPF Q+   ++    +  RYYAGWADKI G+T P DG Y   T HEPIGV GQIIPWNF
Sbjct:   33 LEIKHTKIFINNEWQNSESGRVFPVYNPATGEQICEIQEADKVDTDKAVRAARLAFSLGSVWRRMDASERGQLLDKLADLVERDRAVLATMESLNSGKPFLQAFYVDLQGVIKTLRYYAGWADKIHGMTIPVDGDYFTFTRHEPIGVCGQIIPWNF 188          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: AL1A7_MOUSE (Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculus GN=Aldh1a7 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.853e-34
Identity = 75/170 (44.12%), Postives = 106/170 (62.35%), Query Frame = 1
Query:  187 VSSAAAAAEDPITPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWN 693
            +SS A  A       +K+ +T++ IN ++ DS S K FP L+P T +VI HV EG+  DV++AV AAR+AF  G PW    A ER +++ + ADL+ER    +A +E+ + GK F  +   +V ++ +  +Y+AGWADKI G T P+DG     T  EPIGV GQIIPWN
Sbjct:    1 MSSPAQPAVPAPLANLKIQHTKIFINNEWHDSVSSKKFPVLNPATEEVICHVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLMERDRLLLATMESMNAGKVFAHAYLLDVEISIKALQYFAGWADKIHGQTIPSDGNIFTYTRREPIGVCGQIIPWN 170          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: AL1A1_RAT (Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Aldh1a1 PE=1 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 1.853e-34
Identity = 76/171 (44.44%), Postives = 106/171 (61.99%), Query Frame = 1
Query:  187 VSSAAAAAEDPITPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            +SS A  A       +K+ +T++ IN ++ DS SGK FP L+P T +VI HV EG+  DV++AV AAR+AF  G PW    A ER +++ + ADL+ER    +A +E  + GK F  +  +++  + +  +Y AGWADKI G T P+DG     T  EPIGV GQIIPWNF
Sbjct:    1 MSSPAQPAVPAPLANLKIQHTKIFINNEWHDSVSGKKFPVLNPATEEVICHVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLMERDRLLLATIEAINGGKVFANAYLSDLGGSIKALKYCAGWADKIHGQTIPSDGDIFTFTRREPIGVCGQIIPWNF 171          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: AL1A1_RABIT (Retinal dehydrogenase 1 OS=Oryctolagus cuniculus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.420e-34
Identity = 72/156 (46.15%), Postives = 100/156 (64.10%), Query Frame = 1
Query:  232 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            +K+ YT++ IN ++ DS SGK FP L+P T + I  + EG+  DV++AV AAR+AF  G PW    A ER +++ + ADL+ER    +A +E+ + GK F  +   ++    +  RY AGWADKIQG T P DG +   T HEP+GV GQIIPWNF
Sbjct:   11 LKIQYTKIFINNEWHDSVSGKKFPVLNPATEEQICLIEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESLNAGKLFPNAYLMDLGGCIKTLRYCAGWADKIQGRTMPMDGDFFCYTRHEPVGVCGQIIPWNF 166          
The following BLAST results are available for this feature:
BLAST of FC930065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 295
Match NameE-valueIdentityDescription
AL1B1_BOVIN1.676e-3548.21Aldehyde dehydrogenase X, mitochondrial (Fragment)... [more]
AL1A1_MACFA1.676e-3543.53Retinal dehydrogenase 1 OS=Macaca fascicularis GN=... [more]
AL1A1_HORSE2.189e-3546.15Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1... [more]
AL1A1_HUMAN2.859e-3546.15Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1... [more]
ALDH1_MACPR8.318e-3547.74Aldehyde dehydrogenase, cytosolic 1 OS=Macroscelid... [more]
AL1A2_TAEGU1.086e-3445.51Retinal dehydrogenase 2 OS=Taeniopygia guttata GN=... [more]
AL1A2_CHICK1.086e-3444.87Retinal dehydrogenase 2 OS=Gallus gallus GN=ALDH1A... [more]
AL1A7_MOUSE1.853e-3444.12Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculu... [more]
AL1A1_RAT1.853e-3444.44Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Al... [more]
AL1A1_RABIT2.420e-3446.15Retinal dehydrogenase 1 OS=Oryctolagus cuniculus G... [more]

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Properties
Property NameValue
Genbank descriptionC34003D08EF PostHarvC1 Citrus clementina cDNA clone C34003D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930065 ID=FC930065; Name=FC930065; organism=Citrus clementina; type=EST; length=698bp
CACAAGAGAGGAGGAGAGGAAAAAAAAAAAAAGATAAAAATTAAAGTTGT
GATGGCTGCAAGAAGGATTCCGCTTTTGCTTTCACGTTCATTCACGTCTT
CTTCACCTACTCTGTTTTCAAGAGGGAGGGATTCTAGTTTGTGCAGAGCT
GCTGCTGCTGCTGCCGCCTCCTGCGGATACAGCACGGTTTCTTCTGCTGC
TGCTGCTGCTGAAGATCCAATTACTCCGCCTGTTAAAGTTGATTATACTC
AGCTTCTAATTAATGGACAATTTGTTGATTCTGCATCAGGCAAAACGTTT
CCCACATTAGACCCCAGGACTGGTGATGTGATTACTCATGTAGCTGAAGG
TGAGGCTGAAGACGTCAACCGAGCAGTTTCTGCTGCTCGCAAGGCATTTG
ATGAAGGACCGTGGCCTAGGAAGACTGCTTATGAAAGGTCAAAAATAATT
TTGCGCTTCGCTGATTTGCTGGAAAGGCATAATGATGAAATTGCAGCCCT
TGAGACTTGGGATAACGGGAAGCCATTCGAGCAGTCTGCCCAGACTGAAG
TACCAATGACCACGCGTTTATTCCGGTACTACGCTGGTTGGGCAGATAAG
ATTCAGGGTCTCACTGCTCCAGCTGATGGACCGTACCATGTGCAAACCTT
GCACGAACCAATTGGTGTAGCAGGTCAAATTATCCCATGGAACTTTCC
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