FC930065

Overview
NameFC930065
Unique NameFC930065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: BETB_RHOS4 (Betaine aldehyde dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=betB PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.249e-14
Identity = 42/146 (28.77%), Postives = 76/146 (52.05%), Query Frame = 1
Query:  259 INGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            ++G+ ++  +G   P + P TG+ I  + E     +  A+++  +A  +  W      ER++I+ R +DL+  HN+E++ LET D GKP +++   +         ++AG A  + G T P  G   V T+ EP+G+   I  WN+
Sbjct:   11 VDGRPLEDETGAPIPVIYPATGEEIARLHEATPAVIEAALASGARA--QAAWAAMRPVERARILRRASDLIRAHNEELSLLETLDTGKPLQETLVADWASGADALEFFAGLAPVVTGETVPL-GQDFVYTIREPLGLCVGIGAWNY 153          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: BADH_AMAHP (Betaine aldehyde dehydrogenase, chloroplastic OS=Amaranthus hypochondriacus GN=BADH4 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.631e-14
Identity = 49/163 (30.06%), Postives = 78/163 (47.85%), Query Frame = 1
Query:  232 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG---PWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQG-----LTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            ++V   QL I+G++ +       P ++P T ++I  +    AEDV  AV+AAR+A        W   +   R+K +   A  +    D  A LE  D GKP +++A+ ++      F YYA  A+ +       +  P D  +    L +PIGV G I PWN+
Sbjct:    3 IRVPSRQLFIDGEWREPIKKNRIPIINPSTEEIIGDIPAATAEDVELAVAAARRALKRNKGEDWASASGAHRAKYLRAIAAKITEKKDYFAKLEAMDCGKPLDEAAR-DIDDVAGCFEYYADQAEALDAKQKAPIALPMD-TFKCHVLKQPIGVVGLISPWNY 163          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: BETB_RHILO (Betaine aldehyde dehydrogenase OS=Rhizobium loti GN=betB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.130e-14
Identity = 43/146 (29.45%), Postives = 67/146 (45.89%), Query Frame = 1
Query:  259 INGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            +NG+++D   G   P + P TG+ I  +       +  A+ AAR A  +  W R    ER +I+ R AD+L   N ++A +ET D GK  +++   + P       Y+ G      G      GP+   T  E +GV   I  WN+
Sbjct:   11 VNGRYIDDEQGAPLPVIYPATGETIAMLRSATPNVLELAIEAARAA--QPAWARLKPVERGRILRRAADILRARNADLARIETLDTGKAIQETLVADAPSAADCLEYFGGAVAAYNGEAVDLGGPF-AYTRREALGVCVGIGAWNY 153          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: BADH_BETVU (Betaine aldehyde dehydrogenase, chloroplastic OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.130e-14
Identity = 47/156 (30.13%), Postives = 76/156 (48.72%), Query Frame = 1
Query:  250 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG---PWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQG-LTAPADGP---YHVQTLHEPIGVAGQIIPWNF 696
            QL I+G++ +       P ++P   ++I  +  G +ED+  AV+AAR+A        W   +   R++ +   A  +    D    LET D+GKPF++ A  ++      F Y+AG A+ +     AP   P   +    L +PIGV G I PWN+
Sbjct:    9 QLFIDGEWREPIKKNRIPIINPSNEEIIGDIPAGSSEDIEVAVAAARRALKRNKGREWAATSGAHRARYLRAIAAKVTERKDHFVKLETIDSGKPFDE-AVLDIDDVATCFEYFAGQAEAMDAKQKAPVTLPMERFKSHVLRQPIGVVGLITPWNY 163          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: BADH_GADCA (Betaine aldehyde dehydrogenase OS=Gadus callarias GN=aldh9A1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.633e-14
Identity = 46/145 (31.72%), Postives = 74/145 (51.03%), Query Frame = 1
Query:  265 GQFVDSASGKTF-PTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            G+ + S  G T  P  +P TG V+  +    AE+V++AV +A+ A+ +  W +    ERS+++L  A ++    D IA LE  +NGK   + A+ ++    +   YYAG A  + G      G     T  EP+GV   I+ WN+
Sbjct:   26 GRRIKSKDGATTEPVFEPATGRVLCQMVPCGAEEVDQAVQSAQAAYLK--WSKMAGIERSRVMLEAARIIRERRDNIAKLEVINNGKTITE-AEYDIDAAWQCIEYYAGLAPTLSGQHIQLPGGAFAYTRREPLGVCAGILAWNY 167          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: ALDH_BACST (Aldehyde dehydrogenase, thermostable OS=Bacillus stearothermophilus GN=aldHT PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.633e-14
Identity = 51/148 (34.46%), Postives = 78/148 (52.70%), Query Frame = 1
Query:  259 INGQFVDSASGKTFPTLDPRTG-DVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAG-WADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            ING +V S S    P+++P    D++ +V     EDVN AV+AA +A  +  W +++  ER + + + A +LE+   +IA   T + GK   + A+ E      + RYYAG  A KI  +   +D    + T   P+GV G I PWNF
Sbjct:   14 INGNWVSSVSNNVEPSINPANRHDIVGYVQRSTLEDVNEAVTAANEA--QTSWWKRSGVERGEYLYKAAHILEQCLQDIAETMTREMGKTLAE-AKAETMRGVHILRYYAGEGARKIGDVIPSSDSEGLLFTTRVPLGVVGVISPWNF 158          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: AL8A1_HUMAN (Aldehyde dehydrogenase family 8 member A1 OS=Homo sapiens GN=ALDH8A1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 49/147 (33.33%), Postives = 78/147 (53.06%), Query Frame = 1
Query:  259 INGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPAD--GPYHVQTLHEPIGVAGQIIPWN 693
            I+G+F+  +S     + DP TG+V   V     +++  AV AAR+AF    W  ++  ERS+++ + ADLLE+  +E A  E+ D GK    +   ++P + + FR++A  +          D  G  H  T+  P+GVAG I PWN
Sbjct:   14 IDGKFLPCSS--YIDSYDPSTGEVYCRVPNSGKDEIEAAVKAAREAFPS--WSSRSPQERSRVLNQVADLLEQSLEEFAQAESKDQGKTLALARTMDIPRSVQNFRFFASSSLHHTSECTQMDHLGCMH-YTVRAPVGVAGLISPWN 155          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: IOLA2_GEOKA (Methylmalonate semialdehyde dehydrogenase [acylating] 2 OS=Geobacillus kaustophilus GN=iolA2 PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.197e-14
Identity = 52/152 (34.21%), Postives = 77/152 (50.66%), Query Frame = 1
Query:  259 INGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAP------ADGPYHVQTLHEPIGVAGQIIPWNF 696
            I GQ+V+S SGKT    +P TG+V+ +V     E+++ AV AA++AF    W +     R++I+ ++  LL  H +E+A L T +NGK + + A  EV        + AG    + G   P        G Y       PIGV G I P+NF
Sbjct:   12 IGGQWVESRSGKTEAVPNPATGEVLAYVPISSREELDEAVRAAKEAFK--TWRKTPVPRRARILFKYQQLLVEHWEELARLVTLENGKSYNE-AYGEVQRGIECVEFAAGAPTLMMGRQLPDIATGIESGMYRY-----PIGVVGGITPFNF 155          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: BETB_RHOSK (Betaine aldehyde dehydrogenase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=betB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.094e-14
Identity = 41/146 (28.08%), Postives = 75/146 (51.37%), Query Frame = 1
Query:  259 INGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            ++G+ ++  +G   P + P TG+ I  + E     +  A+++  +A  +  W      ER++I+ R +DL+   N+E++ LET D GKP +++   +         ++AG A  + G T P  G   V T+ EP+G+   I  WN+
Sbjct:   11 VDGRPLEDETGAPIPVIYPATGEEIARLHEATPAVIEAALASGARA--QAAWAAMRPVERARILRRASDLIRARNEELSLLETLDTGKPLQETLVADWASGADALEFFAGLAPAVTGETVPL-GQDFVYTIREPLGLCVGIGAWNY 153          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: BETB_RHOS1 (Betaine aldehyde dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=betB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.094e-14
Identity = 41/146 (28.08%), Postives = 75/146 (51.37%), Query Frame = 1
Query:  259 INGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            ++G+ ++  +G   P + P TG+ I  + E     +  A+++  +A  +  W      ER++I+ R +DL+   N+E++ LET D GKP +++   +         ++AG A  + G T P  G   V T+ EP+G+   I  WN+
Sbjct:   11 VDGRPLEDETGAPIPVIYPATGEEIARLHEATPAVIEAALASGARA--QAAWAAMRPVERARILRRASDLIRARNEELSLLETLDTGKPLQETLVADWASGADALEFFAGLAPAVTGETVPL-GQDFVYTIREPLGLCVGIGAWNY 153          
The following BLAST results are available for this feature:
BLAST of FC930065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 295
Match NameE-valueIdentityDescription
BETB_RHOS41.249e-1428.77Betaine aldehyde dehydrogenase OS=Rhodobacter spha... [more]
BADH_AMAHP1.631e-1430.06Betaine aldehyde dehydrogenase, chloroplastic OS=A... [more]
BETB_RHILO2.130e-1429.45Betaine aldehyde dehydrogenase OS=Rhizobium loti G... [more]
BADH_BETVU2.130e-1430.13Betaine aldehyde dehydrogenase, chloroplastic OS=B... [more]
BADH_GADCA3.633e-1431.72Betaine aldehyde dehydrogenase OS=Gadus callarias ... [more]
ALDH_BACST3.633e-1434.46Aldehyde dehydrogenase, thermostable OS=Bacillus s... [more]
AL8A1_HUMAN4.745e-1433.33Aldehyde dehydrogenase family 8 member A1 OS=Homo ... [more]
IOLA2_GEOKA6.197e-1434.21Methylmalonate semialdehyde dehydrogenase [acylati... [more]
BETB_RHOSK8.094e-1428.08Betaine aldehyde dehydrogenase OS=Rhodobacter spha... [more]
BETB_RHOS18.094e-1428.08Betaine aldehyde dehydrogenase OS=Rhodobacter spha... [more]

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Properties
Property NameValue
Genbank descriptionC34003D08EF PostHarvC1 Citrus clementina cDNA clone C34003D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930065 ID=FC930065; Name=FC930065; organism=Citrus clementina; type=EST; length=698bp
CACAAGAGAGGAGGAGAGGAAAAAAAAAAAAAGATAAAAATTAAAGTTGT
GATGGCTGCAAGAAGGATTCCGCTTTTGCTTTCACGTTCATTCACGTCTT
CTTCACCTACTCTGTTTTCAAGAGGGAGGGATTCTAGTTTGTGCAGAGCT
GCTGCTGCTGCTGCCGCCTCCTGCGGATACAGCACGGTTTCTTCTGCTGC
TGCTGCTGCTGAAGATCCAATTACTCCGCCTGTTAAAGTTGATTATACTC
AGCTTCTAATTAATGGACAATTTGTTGATTCTGCATCAGGCAAAACGTTT
CCCACATTAGACCCCAGGACTGGTGATGTGATTACTCATGTAGCTGAAGG
TGAGGCTGAAGACGTCAACCGAGCAGTTTCTGCTGCTCGCAAGGCATTTG
ATGAAGGACCGTGGCCTAGGAAGACTGCTTATGAAAGGTCAAAAATAATT
TTGCGCTTCGCTGATTTGCTGGAAAGGCATAATGATGAAATTGCAGCCCT
TGAGACTTGGGATAACGGGAAGCCATTCGAGCAGTCTGCCCAGACTGAAG
TACCAATGACCACGCGTTTATTCCGGTACTACGCTGGTTGGGCAGATAAG
ATTCAGGGTCTCACTGCTCCAGCTGATGGACCGTACCATGTGCAAACCTT
GCACGAACCAATTGGTGTAGCAGGTCAAATTATCCCATGGAACTTTCC
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