FC930065

Overview
NameFC930065
Unique NameFC930065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: SSDH_HYLLA (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Hylobates lar GN=ALDH5A1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 46/152 (30.26%), Postives = 82/152 (53.95%), Query Frame = 1
Query:  247 TQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQG--LTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            T   + G+++ +A+  TFP  DP +G  +  VA+    +   AV AA +AF    W   +A ERS ++ ++ +L+ ++ D++A + T ++GKP ++ A  E+  +     +++  A ++ G  +  PA        L +PIGVA  I PWNF
Sbjct:   61 TDSFVGGRWLPAAA--TFPVQDPASGAALGMVADCGVREARAAVRAAYEAFCS--WREVSAKERSSLLRKWYNLMIQNKDDLARIITAESGKPLKE-AHGEILYSAFFLEWFSEEARRVYGDIIYTPAK-DRRALVLKQPIGVAAVITPWNF 206          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: SSDH_HUMAN (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Homo sapiens GN=ALDH5A1 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 46/152 (30.26%), Postives = 82/152 (53.95%), Query Frame = 1
Query:  247 TQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQG--LTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            T   + G+++ +A+  TFP  DP +G  +  VA+    +   AV AA +AF    W   +A ERS ++ ++ +L+ ++ D++A + T ++GKP ++ A  E+  +     +++  A ++ G  +  PA        L +PIGVA  I PWNF
Sbjct:   61 TDSFVGGRWLPAAA--TFPVQDPASGAALGMVADCGVREARAAVRAAYEAFCR--WREVSAKERSSLLRKWYNLMIQNKDDLARIITAESGKPLKE-AHGEILYSAFFLEWFSEEARRVYGDIIHTPAK-DRRALVLKQPIGVAAVITPWNF 206          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: SSDH_GORGO (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Gorilla gorilla gorilla GN=ALDH5A1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 46/152 (30.26%), Postives = 82/152 (53.95%), Query Frame = 1
Query:  247 TQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQG--LTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            T   + G+++ +A+  TFP  DP +G  +  VA+    +   AV AA +AF    W   +A ERS ++ ++ +L+ ++ D++A + T ++GKP ++ A  E+  +     +++  A ++ G  +  PA        L +PIGVA  I PWNF
Sbjct:   61 TDSFVGGRWLPAAA--TFPVQDPASGAALGMVADCGVREARAAVRAAYEAFCR--WREVSAKERSSLLRKWYNLMIQNKDDLARIITAESGKPLKE-AHGEILYSAFFLEWFSEEARRVYGDIIYTPAK-DRRALVLKQPIGVAAVITPWNF 206          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: IOLA_BACP2 (Methylmalonate semialdehyde dehydrogenase [acylating] OS=Bacillus pumilus (strain SAFR-032) GN=iolA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 49/148 (33.11%), Postives = 73/148 (49.32%), Query Frame = 1
Query:  259 INGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAP--ADGPYHVQTLHEPIGVAGQIIPWNF 696
            I GQ++++ + +T    +P TG +I  V     +DV RAV AA++AF    W +     R++I+ ++  LL    DE+A L T +NGK   + A+ EV        + AG    + G   P  A G         PIGV G I P+NF
Sbjct:   13 IGGQWIEAETSQTEAVYNPATGKIIAEVPLSTKKDVERAVQAAQEAFT--TWSKTPVPRRARILFKYQQLLVDKWDELAELVTMENGKSITE-AKGEVQRGIECVEFAAGAPTLMMGKQLPDIASG-LESGMYRYPIGVIGGITPFNF 156          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: AL9A1_HUMAN (4-trimethylaminobutyraldehyde dehydrogenase OS=Homo sapiens GN=ALDH9A1 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 51/139 (36.69%), Postives = 71/139 (51.08%), Query Frame = 1
Query:  283 ASGKTFPTLDPRTGDVI-THVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            ASG T    +P TG VI T    GE E VN AV  A+ AF    W +K+  ER +I+L  A ++    DEIA +E  +NGK   + A+ ++ ++ +   YYAG A  + G      G     T  EP+GV   I  WN+
Sbjct:   25 ASG-TEKAFEPATGRVIATFTCSGEKE-VNLAVQNAKAAFKI--WSQKSGMERCRILLEAARIIREREDEIATMECINNGKSIFE-ARLDIDISWQCLEYYAGLAASMAGEHIQLPGGSFGYTRREPLGVCVGIGAWNY 158          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: AL9A1_BOVIN (4-trimethylaminobutyraldehyde dehydrogenase OS=Bos taurus GN=ALDH9A1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 51/139 (36.69%), Postives = 71/139 (51.08%), Query Frame = 1
Query:  283 ASGKTFPTLDPRTGDVI-THVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            ASG T    +P +G VI T    GE E VN AV  A+ AF    W +K+  ER +I+L  A ++    DEIA +ET +NGK   + A+ ++  + +   YYAG A  + G      G     T  EP+GV   I  WN+
Sbjct:   25 ASG-TEKAFEPASGRVIATFTCSGEKE-VNLAVQDAKAAFKI--WSQKSGMERCRILLEAARIIRERRDEIATMETINNGKSIFE-ARWDIDTSWQCLEYYAGLAGSMAGEHIQLPGGSFGYTRREPLGVCVGIGAWNY 158          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: AL9A1_RAT (4-trimethylaminobutyraldehyde dehydrogenase OS=Rattus norvegicus GN=Aldh9a1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 50/139 (35.97%), Postives = 72/139 (51.80%), Query Frame = 1
Query:  283 ASGKTFPTLDPRTG-DVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            ASG T    +P TG ++ T    GE E VN AV  A+ AF    W +K+  ER +++L  A +++   DEIA +ET +NGK   + A+ +V  + +   YYAG A  + G      G     T  EP+GV   I  WN+
Sbjct:   25 ASG-TEKAFEPATGREIATFKCSGEKE-VNLAVENAKAAFKI--WSKKSGLERCQVLLEAARIIKERRDEIAIMETINNGKSIFE-ARLDVDTSWQCLEYYAGLAASMAGEHIQLPGGSFGYTRREPLGVCLGIGAWNY 158          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: IOLA2_BACCZ (Methylmalonate semialdehyde dehydrogenase [acylating] 2 OS=Bacillus cereus (strain ZK / E33L) GN=iolA2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 51/152 (33.55%), Postives = 74/152 (48.68%), Query Frame = 1
Query:  259 INGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAP------ADGPYHVQTLHEPIGVAGQIIPWNF 696
            I G++V+S S K     +P TG+VI  V      DV +AVSAA +AF    W +    +R++I+ ++  LL  + +E+A L T +NGK + + A  EV        + AG    + G   P        G Y       PIGV G I P+NF
Sbjct:   14 IGGEWVESISTKMEAVYNPATGEVIAQVPLSTKVDVEQAVSAANEAFKS--WSKTAVPKRARILFKYQQLLVDNWEELAKLITIENGKSYNE-AYGEVLRGIECVEFAAGAPTLMMGKQLPDIATGIESGMYRY-----PIGVIGGITPFNF 157          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: SSDH_PANPA (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Pan paniscus GN=ALDH5A1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 46/152 (30.26%), Postives = 82/152 (53.95%), Query Frame = 1
Query:  247 TQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQG--LTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            T   + G+++ +A+  TFP  DP +G  +  VA+    +   AV AA +AF    W   +A ERS ++ ++ +L+ ++ D++A + T ++GKP ++ A  E+  +     +++  A ++ G  +  PA        L +PIGVA  I PWNF
Sbjct:   61 TDSFVGGRWLPAAA--TFPVQDPASGAALGMVADCGVREARAAVRAAYEAFC--CWREVSAKERSSLLRKWYNLMIQNKDDLARIITAESGKPLKE-AHGEILYSAFFLEWFSEEARRVYGDIIYTPAK-DRRALVLKQPIGVAAVITPWNF 206          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: IOLA2_OCEIH (Methylmalonate semialdehyde dehydrogenase [acylating] 2 OS=Oceanobacillus iheyensis GN=iolA2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 48/152 (31.58%), Postives = 72/152 (47.37%), Query Frame = 1
Query:  259 INGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQG------LTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            I G++++S + KT    +P TG+VI  V     EDV+ A+  A +AF    W      +R++I+ ++  LL  H +E+A L T +NGK + + A  EV        +  G    + G       T    G Y       PIGV G I P+NF
Sbjct:   13 IGGEWIESRTEKTEDVFNPATGEVIAQVPISTTEDVHHAIEVANEAFK--TWKEVPVPKRARILFKYQQLLVEHWEELAKLITLENGKNYAE-AYGEVQRGIENVEFATGAPSLMMGEQLASIATELESGVYRY-----PIGVIGGITPFNF 156          
The following BLAST results are available for this feature:
BLAST of FC930065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 295
Match NameE-valueIdentityDescription
SSDH_HYLLA1.688e-1130.26Succinate-semialdehyde dehydrogenase, mitochondria... [more]
SSDH_HUMAN1.688e-1130.26Succinate-semialdehyde dehydrogenase, mitochondria... [more]
SSDH_GORGO1.688e-1130.26Succinate-semialdehyde dehydrogenase, mitochondria... [more]
IOLA_BACP21.688e-1133.11Methylmalonate semialdehyde dehydrogenase [acylati... [more]
AL9A1_HUMAN1.688e-1136.694-trimethylaminobutyraldehyde dehydrogenase OS=Hom... [more]
AL9A1_BOVIN1.688e-1136.694-trimethylaminobutyraldehyde dehydrogenase OS=Bos... [more]
AL9A1_RAT2.204e-1135.974-trimethylaminobutyraldehyde dehydrogenase OS=Rat... [more]
IOLA2_BACCZ2.879e-1133.55Methylmalonate semialdehyde dehydrogenase [acylati... [more]
SSDH_PANPA3.760e-1130.26Succinate-semialdehyde dehydrogenase, mitochondria... [more]
IOLA2_OCEIH3.760e-1131.58Methylmalonate semialdehyde dehydrogenase [acylati... [more]

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Properties
Property NameValue
Genbank descriptionC34003D08EF PostHarvC1 Citrus clementina cDNA clone C34003D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930065 ID=FC930065; Name=FC930065; organism=Citrus clementina; type=EST; length=698bp
CACAAGAGAGGAGGAGAGGAAAAAAAAAAAAAGATAAAAATTAAAGTTGT
GATGGCTGCAAGAAGGATTCCGCTTTTGCTTTCACGTTCATTCACGTCTT
CTTCACCTACTCTGTTTTCAAGAGGGAGGGATTCTAGTTTGTGCAGAGCT
GCTGCTGCTGCTGCCGCCTCCTGCGGATACAGCACGGTTTCTTCTGCTGC
TGCTGCTGCTGAAGATCCAATTACTCCGCCTGTTAAAGTTGATTATACTC
AGCTTCTAATTAATGGACAATTTGTTGATTCTGCATCAGGCAAAACGTTT
CCCACATTAGACCCCAGGACTGGTGATGTGATTACTCATGTAGCTGAAGG
TGAGGCTGAAGACGTCAACCGAGCAGTTTCTGCTGCTCGCAAGGCATTTG
ATGAAGGACCGTGGCCTAGGAAGACTGCTTATGAAAGGTCAAAAATAATT
TTGCGCTTCGCTGATTTGCTGGAAAGGCATAATGATGAAATTGCAGCCCT
TGAGACTTGGGATAACGGGAAGCCATTCGAGCAGTCTGCCCAGACTGAAG
TACCAATGACCACGCGTTTATTCCGGTACTACGCTGGTTGGGCAGATAAG
ATTCAGGGTCTCACTGCTCCAGCTGATGGACCGTACCATGTGCAAACCTT
GCACGAACCAATTGGTGTAGCAGGTCAAATTATCCCATGGAACTTTCC
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