FC930065

Overview
NameFC930065
Unique NameFC930065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: BETB_BRUAB (Betaine aldehyde dehydrogenase OS=Brucella abortus GN=betB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 40/146 (27.40%), Postives = 65/146 (44.52%), Query Frame = 1
Query:  259 INGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            I G FV+  +GK  P + P TG+ I  +       +  A +AA KA  +G W      ER +I+ R A++L   N +++ LET D GK  +++   +         ++ G      G      G +   T  E +G+   I  WN+
Sbjct:   11 IGGAFVEDKAGKPLPVIYPATGEEIASLYSATPGIIEAAYAAALKA--QGEWAALKPVERGRILRRTAEILREKNRKLSKLETLDTGKALQETLVADAASAADALEFFGGIISGFNGEFVELGGSF-AYTRREALGICVGIGAWNY 153          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: BETB_BRUA2 (Betaine aldehyde dehydrogenase OS=Brucella abortus (strain 2308) GN=betB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 40/146 (27.40%), Postives = 65/146 (44.52%), Query Frame = 1
Query:  259 INGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            I G FV+  +GK  P + P TG+ I  +       +  A +AA KA  +G W      ER +I+ R A++L   N +++ LET D GK  +++   +         ++ G      G      G +   T  E +G+   I  WN+
Sbjct:   11 IGGAFVEDKAGKPLPVIYPATGEEIASLYSATPGIIEAAYAAALKA--QGEWAALKPVERGRILRRTAEILREKNRKLSKLETLDTGKALQETLVADAASAADALEFFGGIISGFNGEFVELGGSF-AYTRREALGICVGIGAWNY 153          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: BETB_BRUA1 (Betaine aldehyde dehydrogenase OS=Brucella abortus (strain S19) GN=betB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 40/146 (27.40%), Postives = 65/146 (44.52%), Query Frame = 1
Query:  259 INGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            I G FV+  +GK  P + P TG+ I  +       +  A +AA KA  +G W      ER +I+ R A++L   N +++ LET D GK  +++   +         ++ G      G      G +   T  E +G+   I  WN+
Sbjct:   11 IGGAFVEDKAGKPLPVIYPATGEEIASLYSATPGIIEAAYAAALKA--QGEWAALKPVERGRILRRTAEILREKNRKLSKLETLDTGKALQETLVADAASAADALEFFGGIISGFNGEFVELGGSF-AYTRREALGICVGIGAWNY 153          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: ASTD_VIBHB (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=astD PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 45/146 (30.82%), Postives = 74/146 (50.68%), Query Frame = 1
Query:  259 INGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            I G++V    G+ F +L P   +VI       AE VN+AVSAAR+AF +  W ++   ER  I+L FA+ ++ ++++IA +   + GKP  ++      M  ++      + D+    T  A G   +   H P+GV     P+NF
Sbjct:    5 IAGEWVQG-QGEAFTSLSPYNQEVIWQGNGATAEQVNQAVSAAREAFVD--WKKRPFAEREAIVLAFAEKVKENSEKIAEVIAKETGKPIWETRTEAAAMAGKIAISIRAYHDRTGEATREAAG-NQIVLRHRPLGVMAVFGPYNF 146          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: A9A1B_DANRE (Aldehyde dehydrogenase family 9 member A1-B OS=Danio rerio GN=aldh9a1b PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 42/135 (31.11%), Postives = 66/135 (48.89%), Query Frame = 1
Query:  292 KTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            K+ P  +P TG V+  +    + +V+ AV  A  AF    W + +  ER++++L  A L+E+  +EIA +E  +NGK   + A+ +V        Y+AG A  + G      G     T  EP GV   I  WN+
Sbjct:   51 KSEPVFEPATGRVLCRLQTCGSAEVDAAVRNASAAFKV--WRKLSGMERARVMLEAARLIEKRREEIAEMEVINNGKSITE-ARLDVDSARLSIEYFAGQATTLSGQHVQLPGGSFAYTRREPFGVCVGIGAWNY 182          
The following BLAST results are available for this feature:
BLAST of FC930065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 295
Match NameE-valueIdentityDescription
BETB_BRUAB8.376e-1127.40Betaine aldehyde dehydrogenase OS=Brucella abortus... [more]
BETB_BRUA28.376e-1127.40Betaine aldehyde dehydrogenase OS=Brucella abortus... [more]
BETB_BRUA18.376e-1127.40Betaine aldehyde dehydrogenase OS=Brucella abortus... [more]
ASTD_VIBHB8.376e-1130.82N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
A9A1B_DANRE8.376e-1131.11Aldehyde dehydrogenase family 9 member A1-B OS=Dan... [more]

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Properties
Property NameValue
Genbank descriptionC34003D08EF PostHarvC1 Citrus clementina cDNA clone C34003D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930065 ID=FC930065; Name=FC930065; organism=Citrus clementina; type=EST; length=698bp
CACAAGAGAGGAGGAGAGGAAAAAAAAAAAAAGATAAAAATTAAAGTTGT
GATGGCTGCAAGAAGGATTCCGCTTTTGCTTTCACGTTCATTCACGTCTT
CTTCACCTACTCTGTTTTCAAGAGGGAGGGATTCTAGTTTGTGCAGAGCT
GCTGCTGCTGCTGCCGCCTCCTGCGGATACAGCACGGTTTCTTCTGCTGC
TGCTGCTGCTGAAGATCCAATTACTCCGCCTGTTAAAGTTGATTATACTC
AGCTTCTAATTAATGGACAATTTGTTGATTCTGCATCAGGCAAAACGTTT
CCCACATTAGACCCCAGGACTGGTGATGTGATTACTCATGTAGCTGAAGG
TGAGGCTGAAGACGTCAACCGAGCAGTTTCTGCTGCTCGCAAGGCATTTG
ATGAAGGACCGTGGCCTAGGAAGACTGCTTATGAAAGGTCAAAAATAATT
TTGCGCTTCGCTGATTTGCTGGAAAGGCATAATGATGAAATTGCAGCCCT
TGAGACTTGGGATAACGGGAAGCCATTCGAGCAGTCTGCCCAGACTGAAG
TACCAATGACCACGCGTTTATTCCGGTACTACGCTGGTTGGGCAGATAAG
ATTCAGGGTCTCACTGCTCCAGCTGATGGACCGTACCATGTGCAAACCTT
GCACGAACCAATTGGTGTAGCAGGTCAAATTATCCCATGGAACTTTCC
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