FC930065

Overview
NameFC930065
Unique NameFC930065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: AL1A1_MOUSE (Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1 PE=1 SV=5)

HSP 1 Score: 144.821 bits (364), Expect = 4.128e-34
Identity = 75/171 (43.86%), Postives = 105/171 (61.40%), Query Frame = 1
Query:  187 VSSAAAAAEDPITPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            +SS A  A       +K+ +T++ IN ++ +S SGK FP L+P T +VI HV EG+  DV++AV AAR+AF  G PW    A ER +++ + ADL+ER    +A +E  + GK F  +  +++    +  +Y AGWADKI G T P+DG     T  EPIGV GQIIPWNF
Sbjct:    1 MSSPAQPAVPAPLADLKIQHTKIFINNEWHNSVSGKKFPVLNPATEEVICHVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLMERDRLLLATMEALNGGKVFANAYLSDLGGCIKALKYCAGWADKIHGQTIPSDGDIFTYTRREPIGVCGQIIPWNF 171          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: AL1A1_CHICK (Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.042e-34
Identity = 71/156 (45.51%), Postives = 97/156 (62.18%), Query Frame = 1
Query:  232 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            +K+ YT++ IN ++ DS SGK F   +P   + I  VAEG+  D+++AV AARKAF+ G PW    A ER +++ + ADL+ER    +A +E  D GK F  +   ++    +  RY AGWADKI G T P DG +   T HEP+GV GQIIPWNF
Sbjct:   24 LKIKYTKIFINNEWHDSVSGKKFEVFNPANEEKICEVAEGDKADIDKAVKAARKAFELGSPWRTMDASERGRLLNKLADLVERDRLTLATMEAIDGGKLFSTAYLMDLGACIKTIRYCAGWADKIHGRTVPMDGNFFTFTRHEPVGVCGQIIPWNF 179          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: ALDH1_ELEED (Aldehyde dehydrogenase, cytosolic 1 OS=Elephantulus edwardii GN=ALDH1 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.049e-33
Identity = 72/155 (46.45%), Postives = 97/155 (62.58%), Query Frame = 1
Query:  232 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWN 693
            +K+ +T+L IN ++ +S SGKTFP  +P T + I  V E + EDV++AV AAR+AF  G PW    A ER ++I + ADL+ER    +A LE+ + GK F  +   ++    +  RY AGWADKIQG T P DG +   T HEPIGV G I PWN
Sbjct:   16 IKIQHTKLFINNEWHESVSGKTFPVFNPATEEKICEVEEADKEDVDKAVKAAREAFQMGSPWRTMDASERGQLIYKLADLIERDRLLLATLESINAGKVFASAYLMDLDYCIKALRYCAGWADKIQGRTIPVDGEFFSYTRHEPIGVCGLIFPWN 170          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: AL1A7_RAT (Aldehyde dehydrogenase, cytosolic 1 OS=Rattus norvegicus GN=Aldh1a7 PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.564e-33
Identity = 72/170 (42.35%), Postives = 105/170 (61.76%), Query Frame = 1
Query:  187 VSSAAAAAEDPITPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWN 693
            +SS A  A       +K+ +T++ IN ++ +S +GK FP ++P T +VI HV EG+  DV++AV AAR+AF  G PW    A ER  ++ + ADL+ER    +A +E+ + GK F  +   +  ++ +  +Y+AGWADKI G T P+DG     T  EPIGV GQIIPWN
Sbjct:    1 MSSPAQPAVPAPLANLKIQHTKIFINNEWHNSLNGKKFPVINPATEEVICHVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGCLLNKLADLMERDRVLLATMESMNAGKIFTHAYLLDTEVSIKALKYFAGWADKIHGQTIPSDGDVFTYTRREPIGVCGQIIPWN 170          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: AL1A3_HUMAN (Aldehyde dehydrogenase family 1 member A3 OS=Homo sapiens GN=ALDH1A3 PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.564e-33
Identity = 73/156 (46.79%), Postives = 97/156 (62.18%), Query Frame = 1
Query:  232 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            ++V +T++ IN ++ +S SGK F T +P T + I  V EG+  DV++AV AA+ AF  G PW R  A  R +++ + ADL+ER    +AALET D GKPF  +   ++    R  RY+AGWADKIQG T P D      T HEPIGV G I PWNF
Sbjct:   27 LEVKFTKIFINNEWHESKSGKKFATCNPSTREQICEVEEGDKPDVDKAVEAAQVAFQRGSPWRRLDALSRGRLLHQLADLVERDRATLAALETMDTGKPFLHAFFIDLEGCIRTLRYFAGWADKIQGKTIPTDDNVVCFTRHEPIGVCGAITPWNF 182          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: FTHFD_XENTR (10-formyltetrahydrofolate dehydrogenase OS=Xenopus tropicalis GN=aldh1l1 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.785e-33
Identity = 67/159 (42.14%), Postives = 103/159 (64.78%), Query Frame = 1
Query:  232 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTL----HEPIGVAGQIIPWNF 696
            VK+ + QL INGQF+D+  GKT+ T++P  G  I  V+  +  D++RAV+AA++AF+ G W +    +R +I+ R AD++E H +E+A +E+ D+G  +  + +T V M+ + FRY+AGW DKIQG T P +     + L     EPIGV G +IPWN+
Sbjct:  418 VKIPH-QLFINGQFIDAEGGKTYDTVNPTDGTAICKVSLAQVSDIDRAVAAAKEAFENGEWGKMNPRDRGRILYRLADIMEEHQEELATIESIDSGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGSTIPINQARPNRNLTFTRREPIGVCGIVIPWNY 575          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: AL1A1_BOVIN (Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 7.785e-33
Identity = 74/170 (43.53%), Postives = 103/170 (60.59%), Query Frame = 1
Query:  190 SSAAAAAEDPITPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            SSA      P+T  ++  YT++ IN ++  S SGK FP  +P T + +  V EG+ EDV++AV AAR+AF  G PW    A ER +++ + ADL+ER +  +A +E  + GK F  +   ++    +  RY AGWADKIQG T P DG +   T  EP+GV GQIIPWNF
Sbjct:    3 SSAMPDVPAPLTN-LQFKYTKIFINNEWHSSVSGKKFPVFNPATEEKLCEVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLIERDHLLLATMEAMNGGKLFSNAYLMDLGGCIKTLRYCAGWADKIQGRTIPMDGNFFTYTRSEPVGVCGQIIPWNF 171          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: AL1A1_SHEEP (Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.017e-32
Identity = 74/170 (43.53%), Postives = 102/170 (60.00%), Query Frame = 1
Query:  190 SSAAAAAEDPITPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            SSA      P+T  ++  YT++ IN ++  S SGK FP  +P T + +  V EG+ EDV++AV AAR+AF  G PW    A ER +++ + ADL+ER    +A +E  + GK F  +   ++    +  RY AGWADKIQG T P DG +   T  EP+GV GQIIPWNF
Sbjct:    3 SSAMPDVPAPLTN-LQFKYTKIFINNEWHSSVSGKKFPVFNPATEEKLCEVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLIERDRLLLATMEAMNGGKLFSNAYLMDLGGCIKTLRYCAGWADKIQGRTIPMDGNFFTYTRSEPVGVCGQIIPWNF 171          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: FTHFD_XENLA (10-formyltetrahydrofolate dehydrogenase OS=Xenopus laevis GN=aldh1l1 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.864e-32
Identity = 66/159 (41.51%), Postives = 103/159 (64.78%), Query Frame = 1
Query:  232 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTL----HEPIGVAGQIIPWNF 696
            VK+ + QL INGQF+D+  GK++ T++P  G  I  V+  +  D++RAV+AA++AF+ G W +    +R +++ R ADL+E H +E+A +E+ D+G  +  + +T V M+ + FRY+AGW DKIQG T P +     + L     EPIGV G +IPWN+
Sbjct:  418 VKIPH-QLFINGQFMDAEGGKSYDTINPTDGTAICKVSLAQISDIDRAVAAAKEAFENGEWGKMNPRDRGRLLYRLADLMEEHQEELATIESIDSGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGRTIPINQARPNRNLTFTRREPIGVCGIVIPWNY 575          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: ALDH_ALTAL (Aldehyde dehydrogenase OS=Alternaria alternata GN=ALTA10 PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.864e-32
Identity = 75/153 (49.02%), Postives = 95/153 (62.09%), Query Frame = 1
Query:  247 TQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGL---TAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            T L IN +FV +  GKTF  ++P T +VI  V E   +DV+ AV+AARKAF+ GPW ++T   R K++ + ADL E++ D IAA+E  DNGK F  +   +VP      RYY GWADKI+G    TAP    Y      EPIGV GQIIPWNF
Sbjct:   18 TGLFINNEFVKAVDGKTFDVINPSTEEVICSVQEATEKDVDIAVAAARKAFN-GPWRKETPENRGKLLNKLADLFEKNADLIAAVEALDNGKAFSMAKNVDVPAAAGCLRYYGGWADKIEGKVVDTAPDSFNY---IRKEPIGVCGQIIPWNF 166          
The following BLAST results are available for this feature:
BLAST of FC930065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 295
Match NameE-valueIdentityDescription
AL1A1_MOUSE4.128e-3443.86Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1... [more]
AL1A1_CHICK7.042e-3445.51Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A... [more]
ALDH1_ELEED2.049e-3346.45Aldehyde dehydrogenase, cytosolic 1 OS=Elephantulu... [more]
AL1A7_RAT4.564e-3342.35Aldehyde dehydrogenase, cytosolic 1 OS=Rattus norv... [more]
AL1A3_HUMAN4.564e-3346.79Aldehyde dehydrogenase family 1 member A3 OS=Homo ... [more]
FTHFD_XENTR7.785e-3342.1410-formyltetrahydrofolate dehydrogenase OS=Xenopus... [more]
AL1A1_BOVIN7.785e-3343.53Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 P... [more]
AL1A1_SHEEP1.017e-3243.53Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 P... [more]
FTHFD_XENLA3.864e-3241.5110-formyltetrahydrofolate dehydrogenase OS=Xenopus... [more]
ALDH_ALTAL3.864e-3249.02Aldehyde dehydrogenase OS=Alternaria alternata GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34003D08EF PostHarvC1 Citrus clementina cDNA clone C34003D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930065 ID=FC930065; Name=FC930065; organism=Citrus clementina; type=EST; length=698bp
CACAAGAGAGGAGGAGAGGAAAAAAAAAAAAAGATAAAAATTAAAGTTGT
GATGGCTGCAAGAAGGATTCCGCTTTTGCTTTCACGTTCATTCACGTCTT
CTTCACCTACTCTGTTTTCAAGAGGGAGGGATTCTAGTTTGTGCAGAGCT
GCTGCTGCTGCTGCCGCCTCCTGCGGATACAGCACGGTTTCTTCTGCTGC
TGCTGCTGCTGAAGATCCAATTACTCCGCCTGTTAAAGTTGATTATACTC
AGCTTCTAATTAATGGACAATTTGTTGATTCTGCATCAGGCAAAACGTTT
CCCACATTAGACCCCAGGACTGGTGATGTGATTACTCATGTAGCTGAAGG
TGAGGCTGAAGACGTCAACCGAGCAGTTTCTGCTGCTCGCAAGGCATTTG
ATGAAGGACCGTGGCCTAGGAAGACTGCTTATGAAAGGTCAAAAATAATT
TTGCGCTTCGCTGATTTGCTGGAAAGGCATAATGATGAAATTGCAGCCCT
TGAGACTTGGGATAACGGGAAGCCATTCGAGCAGTCTGCCCAGACTGAAG
TACCAATGACCACGCGTTTATTCCGGTACTACGCTGGTTGGGCAGATAAG
ATTCAGGGTCTCACTGCTCCAGCTGATGGACCGTACCATGTGCAAACCTT
GCACGAACCAATTGGTGTAGCAGGTCAAATTATCCCATGGAACTTTCC
back to top