FC930065

Overview
NameFC930065
Unique NameFC930065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: AL1A3_MOUSE (Aldehyde dehydrogenase family 1 member A3 OS=Mus musculus GN=Aldh1a3 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.046e-32
Identity = 71/156 (45.51%), Postives = 96/156 (61.54%), Query Frame = 1
Query:  232 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            ++V +T++ IN  + +S SG+ F T +P T + I  V EG+  DV++AV AA+ AF  G PW R  A  R +++ + ADL+ER    +A LET D GKPF  +   ++    + FRY+AGWADKIQG T P D      T HEPIGV G I PWNF
Sbjct:   27 LEVKFTKIFINNDWHESKSGRKFATYNPSTLEKICEVEEGDKPDVDKAVEAAQAAFQRGSPWRRLDALSRGQLLHQLADLVERDRAILATLETMDTGKPFLHAFFVDLEGCIKTFRYFAGWADKIQGRTIPTDDNVVCFTRHEPIGVCGAITPWNF 182          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: ALDH_EMENI (Aldehyde dehydrogenase OS=Emericella nidulans GN=aldA PE=3 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.124e-31
Identity = 76/159 (47.80%), Postives = 97/159 (61.01%), Query Frame = 1
Query:  223 TPPVKVDYTQ-LLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            TP +K +    L IN +FV    GKTF  ++P    VIT V E   +DV+ AV+AAR AF EGPW + T  ER  +I + ADL+ER  D +AA+E+ DNGK F   A+ ++  +    RYYAGWADKI G T   +      T HEP+GV GQIIPWNF
Sbjct:   10 TPVIKYEQPLGLFINNEFVKGVEGKTFQVINPSNEKVITSVHEATEKDVDVAVAAARAAF-EGPWRQVTPSERGILINKLADLMERDIDTLAAIESLDNGKAFTM-AKVDLANSIGCLRYYAGWADKIHGQTIDTNPETLTYTRHEPVGVCGQIIPWNF 166          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: AL1A3_RAT (Aldehyde dehydrogenase family 1 member A3 OS=Rattus norvegicus GN=Aldh1a3 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.124e-31
Identity = 70/156 (44.87%), Postives = 95/156 (60.90%), Query Frame = 1
Query:  232 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            ++V +T++ IN  + +  SG+ F T +P T + I  V EG+  DV++AV AA+ AF  G PW R  A  R +++ + ADL+ER    +A LET D GKPF  +   ++    + FRY+AGWADKIQG T P D      T HEPIGV G I PWNF
Sbjct:   27 LEVKFTKIFINNDWHEPKSGRKFATYNPSTLEKICEVEEGDKPDVDKAVEAAQAAFQRGSPWRRLDALSRGQLLHQLADLIERDRAILATLETMDTGKPFLHAFFVDLEGCIKTFRYFAGWADKIQGRTIPTDDNVMCFTRHEPIGVCGAITPWNF 182          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: FTHFD_MOUSE (10-formyltetrahydrofolate dehydrogenase OS=Mus musculus GN=Aldh1l1 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.468e-31
Identity = 66/153 (43.14%), Postives = 99/153 (64.71%), Query Frame = 1
Query:  250 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPAD--GPYHVQTL--HEPIGVAGQIIPWNF 696
            QL I G+FVD+   KT+ T++P  G VI  V+  +  DV++AV+AA++AF+ G W +  A +R +++ R ADL+E+H +E+A +E  D G  +  + +T V M+ + FRY+AGW DKIQG T P +   P    TL   EP+GV G +IPWN+
Sbjct:  423 QLFIGGEFVDAEGAKTYSTINPTDGSVICQVSLAQVSDVDKAVAAAKEAFENGLWGKINARDRGRLLYRLADLMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGATIPINQARPNRNLTLTKKEPVGVCGIVIPWNY 575          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: FTHFD_PONAB (10-formyltetrahydrofolate dehydrogenase OS=Pongo abelii GN=ALDH1L1 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.918e-31
Identity = 67/153 (43.79%), Postives = 99/153 (64.71%), Query Frame = 1
Query:  250 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPAD--GPYHVQTL--HEPIGVAGQIIPWNF 696
            QL I G+FVD+   KT+ T++P  G VI  V+  +  DV++AV+AA+ AF+ G W + +A +R +++ R ADL+E+H +E+A +E  D G  +  + +T V M+ + FRY+AGW DKIQG T P +   P    TL   EP+GV G IIPWN+
Sbjct:  423 QLFIGGEFVDAEGAKTYETINPTDGSVICQVSLAQVTDVDKAVAAAKDAFENGRWGKISARDRGRLLYRLADLMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGSTIPINQARPNRNLTLTRKEPVGVCGIIIPWNY 575          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: CROM_ENTDO (Omega-crystallin OS=Enteroctopus dofleini PE=1 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 1.918e-31
Identity = 69/159 (43.40%), Postives = 97/159 (61.01%), Query Frame = 1
Query:  223 TPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            TP +K  +T++ IN QFVDS +GK +  ++P T   I  V EG   D+++AV A + AF  G PW R  A  R  ++ R ADL ER    +++LET + GKP++ SA  ++    ++ RYYAGWADK  G   P DG +   T HEP+G+ G IIPWN+
Sbjct:   10 TPEIK--FTKIFINNQFVDSVNGKAYSVINPCTTKKICDVQEGSKADIDKAVQACKLAFKRGTPWRRMDASRRGHLLYRLADLFERDIAYLSSLETLNTGKPYK-SAYQDIVHCIQVLRYYAGWADKNMGQNIPVDGDFFSFTKHEPVGICGLIIPWNY 165          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: FTHFD_RAT (10-formyltetrahydrofolate dehydrogenase OS=Rattus norvegicus GN=Aldh1l1 PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.504e-31
Identity = 65/153 (42.48%), Postives = 99/153 (64.71%), Query Frame = 1
Query:  250 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPAD--GPYHVQTL--HEPIGVAGQIIPWNF 696
            QL I G+FVD+   KT+ T++P  G VI  V+  +  DV++AV+AA++AF+ G W +  A +R +++ R AD++E+H +E+A +E  D G  +  + +T V M+ + FRY+AGW DKIQG T P +   P    TL   EP+GV G +IPWN+
Sbjct:  423 QLFIGGEFVDAEGSKTYNTINPTDGSVICQVSLAQVSDVDKAVAAAKEAFENGLWGKINARDRGRLLYRLADVMEQHQEELATIEALDRGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGATIPINQARPNRNLTLTKKEPVGVCGIVIPWNY 575          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: AL1L2_MOUSE (Probable 10-formyltetrahydrofolate dehydrogenase ALDH1L2 OS=Mus musculus GN=Aldh1l2 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.504e-31
Identity = 68/159 (42.77%), Postives = 100/159 (62.89%), Query Frame = 1
Query:  232 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAP---ADGPYHVQ-TLHEPIGVAGQIIPWNF 696
            VK+ Y Q  INGQFVD+  G+T+ T++P  G  I  V+     DV+RAV+AA+ AF+ G W R  A +R +++ R ADL+E + +E+A +E  D+G  +  + +T + M+ + FRY+AGW DKIQG T P   A   Y++  T  EP+G    IIPWN+
Sbjct:  439 VKIPY-QCFINGQFVDAEDGETYATVNPTDGTTICRVSHASLADVDRAVAAAKDAFENGEWGRMNARDRGRLMYRLADLMEENQEELATIEALDSGAVYTLALKTHIGMSVQTFRYFAGWCDKIQGSTIPINQARPNYNLTFTKKEPLGACAIIIPWNY 596          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: ALDH2_LEITA (Aldehyde dehydrogenase, mitochondrial OS=Leishmania tarentolae GN=ALDH2 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.271e-31
Identity = 74/166 (44.58%), Postives = 100/166 (60.24%), Query Frame = 1
Query:  199 AAAAEDPITPPVKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            A  A   + P V     +LLING+FV + SGKTF  ++P    VI +VAE E  DV+ AV AAR AF+   +       R  ++LR AD+LE+++ E+AALE+ DNGKP+E +   +V ++   FRY AG ADK+ G   P  G +      +PIGV GQIIPWNF
Sbjct:    4 ATLARLEMAPKVTHIQEKLLINGKFVPAVSGKTFEVVNPADEKVIANVAEAEKADVDLAVKAARHAFES--FRMTDCQWRRNLMLRLADILEKNSKEMAALESLDNGKPYEVALNVDVALSVECFRYCAGLADKVNGTVPPRSGNFLGIVKRQPIGVCGQIIPWNF 167          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: AL1L2_HUMAN (Probable 10-formyltetrahydrofolate dehydrogenase ALDH1L2 OS=Homo sapiens GN=ALDH1L2 PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 3.271e-31
Identity = 68/159 (42.77%), Postives = 98/159 (61.64%), Query Frame = 1
Query:  232 VKVDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTL----HEPIGVAGQIIPWNF 696
            VK+ Y Q  INGQF D+  GKT+ T++P  G  I  V+     DV++AV+AA+ AF+ G W R  A ER +++ R ADLLE + +E+A +E  D+G  +  + +T + M+ + FRY+AGW DKIQG T P +     + L     EP+GV   IIPWN+
Sbjct:  439 VKMPY-QCFINGQFTDADDGKTYDTINPTDGSTICKVSYASLADVDKAVAAAKDAFENGEWGRMNARERGRLMYRLADLLEENQEELATIEALDSGAVYTLALKTHIGMSVQTFRYFAGWCDKIQGSTIPINQARPNRNLTFTKKEPLGVCAIIIPWNY 596          
The following BLAST results are available for this feature:
BLAST of FC930065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 295
Match NameE-valueIdentityDescription
AL1A3_MOUSE5.046e-3245.51Aldehyde dehydrogenase family 1 member A3 OS=Mus m... [more]
ALDH_EMENI1.124e-3147.80Aldehyde dehydrogenase OS=Emericella nidulans GN=a... [more]
AL1A3_RAT1.124e-3144.87Aldehyde dehydrogenase family 1 member A3 OS=Rattu... [more]
FTHFD_MOUSE1.468e-3143.1410-formyltetrahydrofolate dehydrogenase OS=Mus mus... [more]
FTHFD_PONAB1.918e-3143.7910-formyltetrahydrofolate dehydrogenase OS=Pongo a... [more]
CROM_ENTDO1.918e-3143.40Omega-crystallin OS=Enteroctopus dofleini PE=1 SV=... [more]
FTHFD_RAT2.504e-3142.4810-formyltetrahydrofolate dehydrogenase OS=Rattus ... [more]
AL1L2_MOUSE2.504e-3142.77Probable 10-formyltetrahydrofolate dehydrogenase A... [more]
ALDH2_LEITA3.271e-3144.58Aldehyde dehydrogenase, mitochondrial OS=Leishmani... [more]
AL1L2_HUMAN3.271e-3142.77Probable 10-formyltetrahydrofolate dehydrogenase A... [more]

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Properties
Property NameValue
Genbank descriptionC34003D08EF PostHarvC1 Citrus clementina cDNA clone C34003D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930065 ID=FC930065; Name=FC930065; organism=Citrus clementina; type=EST; length=698bp
CACAAGAGAGGAGGAGAGGAAAAAAAAAAAAAGATAAAAATTAAAGTTGT
GATGGCTGCAAGAAGGATTCCGCTTTTGCTTTCACGTTCATTCACGTCTT
CTTCACCTACTCTGTTTTCAAGAGGGAGGGATTCTAGTTTGTGCAGAGCT
GCTGCTGCTGCTGCCGCCTCCTGCGGATACAGCACGGTTTCTTCTGCTGC
TGCTGCTGCTGAAGATCCAATTACTCCGCCTGTTAAAGTTGATTATACTC
AGCTTCTAATTAATGGACAATTTGTTGATTCTGCATCAGGCAAAACGTTT
CCCACATTAGACCCCAGGACTGGTGATGTGATTACTCATGTAGCTGAAGG
TGAGGCTGAAGACGTCAACCGAGCAGTTTCTGCTGCTCGCAAGGCATTTG
ATGAAGGACCGTGGCCTAGGAAGACTGCTTATGAAAGGTCAAAAATAATT
TTGCGCTTCGCTGATTTGCTGGAAAGGCATAATGATGAAATTGCAGCCCT
TGAGACTTGGGATAACGGGAAGCCATTCGAGCAGTCTGCCCAGACTGAAG
TACCAATGACCACGCGTTTATTCCGGTACTACGCTGGTTGGGCAGATAAG
ATTCAGGGTCTCACTGCTCCAGCTGATGGACCGTACCATGTGCAAACCTT
GCACGAACCAATTGGTGTAGCAGGTCAAATTATCCCATGGAACTTTCC
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