FC930065

Overview
NameFC930065
Unique NameFC930065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: FTHFD_HUMAN (10-formyltetrahydrofolate dehydrogenase OS=Homo sapiens GN=ALDH1L1 PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 9.517e-31
Identity = 67/153 (43.79%), Postives = 98/153 (64.05%), Query Frame = 1
Query:  250 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPAD--GPYHVQTL--HEPIGVAGQIIPWNF 696
            QL I G+FVD+   KT  T++P  G VI  V+  +  DV++AV+AA+ AF+ G W + +A +R +++ R ADL+E+H +E+A +E  D G  +  + +T V M+ + FRY+AGW DKIQG T P +   P    TL   EP+GV G IIPWN+
Sbjct:  423 QLFIGGEFVDAEGAKTSETINPTDGSVICQVSLAQVTDVDKAVAAAKDAFENGRWGKISARDRGRLMYRLADLMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGSTIPINQARPNRNLTLTRKEPVGVCGIIIPWNY 575          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: ALDH_ASPNG (Aldehyde dehydrogenase OS=Aspergillus niger GN=aldA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.344e-29
Identity = 74/162 (45.68%), Postives = 93/162 (57.41%), Query Frame = 1
Query:  220 ITPPVKVDYTQ---LLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            IT P  V Y Q   L I+G+FV  A GKTF T++P     I  V E   +DV+ AV+AARKAF EG W + T   R +++ + ADL ER  + +A++E  DNGK     A  ++       RYY GWADKI G T   +      T HEPIGV GQIIPWNF
Sbjct:    8 ITTPNGVKYEQPLGLFIDGEFVKGAEGKTFETINPSNEKPIVAVHEATEKDVDTAVAAARKAF-EGSWRQVTPSTRGRMLTKLADLFERDAEILASIEALDNGKSITM-AHGDIAGAAGCLRYYGGWADKIHGQTIDTNSETLNYTRHEPIGVCGQIIPWNF 167          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: CROM_OMMSL (Omega-crystallin OS=Ommastrephes sloanei PE=2 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 5.222e-29
Identity = 65/163 (39.88%), Postives = 97/163 (59.51%), Query Frame = 1
Query:  220 ITPPVK---VDYTQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEG-PWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            I PP +   + + ++ IN QFV+S S K +P  +P   + +  V EG+  D+++AV A + AF  G PW R  A     ++ R ADL+ER    +A+LET D GKP++ S Q  V    ++ RY+AGWADK  G + P DG +   T +EP+GV G +IP+N+
Sbjct:    4 IPPPTRNPEIKHNKIFINNQFVNSTSNKAYPVYNPCDNEKVCEVQEGDKSDIDKAVQACKAAFKRGTPWRRMDASRLGHLLYRLADLMERDIAYMASLETMDTGKPYKNSYQDMVHCI-QVLRYFAGWADKNMGESIPVDGDFFCYTRNEPVGVCGLLIPYNY 165          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: BETB_BURCM (Betaine aldehyde dehydrogenase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=betB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.848e-28
Identity = 64/149 (42.95%), Postives = 88/149 (59.06%), Query Frame = 1
Query:  250 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            +L I G +VD+ SGKTF T DP TG+++  V +  A DV+RAV++AR+   E  W   TA +RS+I+ R  DLL   NDE+AA+ET D GKP  ++   ++     +  YYAG A  I+GL  P      V T  EP+GV   I  WN+
Sbjct:    8 RLYIGGGYVDATSGKTFDTFDPATGELLAQVQQASAADVDRAVASAREGQRE--WAAMTAMQRSRILRRAVDLLRERNDELAAIETRDTGKPIGETLAVDIVTGADVIEYYAGLATAIEGLQVPLRAESFVYTRREPLGVCAGIGAWNY 154          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: BETB_BURA4 (Betaine aldehyde dehydrogenase OS=Burkholderia ambifaria (strain MC40-6) GN=betB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.848e-28
Identity = 64/149 (42.95%), Postives = 88/149 (59.06%), Query Frame = 1
Query:  250 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            +L I G +VD+ SGKTF T DP TG+++  V +  A DV+RAV++AR+   E  W   TA +RS+I+ R  DLL   NDE+AA+ET D GKP  ++   ++     +  YYAG A  I+GL  P      V T  EP+GV   I  WN+
Sbjct:    8 RLYIGGGYVDATSGKTFDTFDPATGELLAQVQQASAADVDRAVASAREGQRE--WAAMTAMQRSRILRRAVDLLRERNDELAAIETRDTGKPIGETLAVDIVTGADVIEYYAGLATAIEGLQVPLRAESFVYTRREPLGVCAGIGAWNY 154          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: BETB_BURS3 (Betaine aldehyde dehydrogenase OS=Burkholderia sp. (strain 383) GN=betB PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.680e-27
Identity = 64/149 (42.95%), Postives = 88/149 (59.06%), Query Frame = 1
Query:  250 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            +L I G +VD+ SGKTF T DP TG+++  V +  A DV+RAV++A++   E  W   TA +RS+I+ R  DLL   NDE+AALET D GKP  ++   ++     +  YYAG A  I+GL  P      V T  EP+GV   I  WN+
Sbjct:    8 RLYIGGGYVDATSGKTFDTFDPATGELLAQVQQASAADVDRAVASAQEGQRE--WAAMTAMQRSRILRRAVDLLRERNDELAALETRDTGKPIGETLAVDIVTGADVIEYYAGLATAIEGLQVPLRAESFVYTRREPLGVCAGIGAWNY 154          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: BETB_BURM1 (Betaine aldehyde dehydrogenase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=betB PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.680e-27
Identity = 63/149 (42.28%), Postives = 88/149 (59.06%), Query Frame = 1
Query:  250 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            +L I G +VD+ SGKTF T DP TGD++  V +  A DV+RA+++A++   E  W   TA +RS+I+ R  +LL   NDE+AALET D GKP  ++   ++     +  YYAG A  I+GL  P      V T  EP+GV   I  WN+
Sbjct:    8 RLYIGGGYVDATSGKTFDTFDPATGDLLAQVQQASAADVDRAIASAQEGQRE--WAAMTAMQRSRILRRAVELLRERNDELAALETRDTGKPIAETLAVDIVTGADVIEYYAGLATAIEGLQVPLRADSFVYTRREPLGVCAGIGAWNY 154          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: ALDH_CLAHE (Aldehyde dehydrogenase OS=Cladosporium herbarum GN=CLAH10 PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.680e-27
Identity = 68/150 (45.33%), Postives = 87/150 (58.00%), Query Frame = 1
Query:  247 TQLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            T L IN +FV    GKTF  ++P    VIT V E   +DV+ AV+AARKAF EG W ++T   R K++   A+L E++ D +AA+E+ DNGK     A+ ++ M     RYY GWADKI G               EPIGV GQIIPWNF
Sbjct:   18 TGLFINNEFVKGQEGKTFDVINPSDESVITQVHEATEKDVDIAVAAARKAF-EGSWRQETPENRGKLLNNLANLFEKNIDLLAAVESLDNGKAISM-AKGDISMCVGCLRYYGGWADKITGKVIDTTPDTFNYVKKEPIGVCGQIIPWNF 165          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: PUUC_ECOLI (Gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli (strain K12) GN=puuC PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.194e-27
Identity = 57/149 (38.26%), Postives = 87/149 (58.39%), Query Frame = 1
Query:  250 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            +L ING++  +A  +TF T+DP T   +  +A G++ D++RA+SAAR  F+ G W   +  +R  ++ + ADL+E H +E+A LET D GKP   S + ++P   R  R+YA   DK+ G  A          + EP+GV   I+PWNF
Sbjct:   21 RLFINGEYTAAAENETFETVDPVTQAPLAKIARGKSVDIDRAMSAARGVFERGDWSLSSPAKRKAVLNKLADLMEAHAEELALLETLDTGKPIRHSLRDDIPGAARAIRWYAEAIDKVYGEVATTSSHELAMIVREPVGVIAAIVPWNF 169          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: BETB_BURVG (Betaine aldehyde dehydrogenase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=betB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.865e-27
Identity = 63/149 (42.28%), Postives = 88/149 (59.06%), Query Frame = 1
Query:  250 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            +L I G +VD+ SGKTF T DP TG+++  V +  A DV+RAV++A++   E  W   TA +RS+I+ R  DLL   NDE+AA+ET D GKP  ++   ++     +  YYAG A  I+GL  P      V T  EP+GV   I  WN+
Sbjct:    8 RLYIGGAYVDATSGKTFDTFDPATGELLAQVQQASAADVDRAVASAQQGQRE--WAALTAMQRSRILRRAVDLLRERNDELAAIETRDTGKPIGETLAVDIVTGADVIEYYAGLATAIEGLQVPLRAESFVYTRREPLGVCAGIGAWNY 154          
The following BLAST results are available for this feature:
BLAST of FC930065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 295
Match NameE-valueIdentityDescription
FTHFD_HUMAN9.517e-3143.7910-formyltetrahydrofolate dehydrogenase OS=Homo sa... [more]
ALDH_ASPNG2.344e-2945.68Aldehyde dehydrogenase OS=Aspergillus niger GN=ald... [more]
CROM_OMMSL5.222e-2939.88Omega-crystallin OS=Ommastrephes sloanei PE=2 SV=3[more]
BETB_BURCM9.848e-2842.95Betaine aldehyde dehydrogenase OS=Burkholderia amb... [more]
BETB_BURA49.848e-2842.95Betaine aldehyde dehydrogenase OS=Burkholderia amb... [more]
BETB_BURS31.680e-2742.95Betaine aldehyde dehydrogenase OS=Burkholderia sp.... [more]
BETB_BURM11.680e-2742.28Betaine aldehyde dehydrogenase OS=Burkholderia mul... [more]
ALDH_CLAHE1.680e-2745.33Aldehyde dehydrogenase OS=Cladosporium herbarum GN... [more]
PUUC_ECOLI2.194e-2738.26Gamma-glutamyl-gamma-aminobutyraldehyde dehydrogen... [more]
BETB_BURVG2.865e-2742.28Betaine aldehyde dehydrogenase OS=Burkholderia vie... [more]

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Properties
Property NameValue
Genbank descriptionC34003D08EF PostHarvC1 Citrus clementina cDNA clone C34003D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930065 ID=FC930065; Name=FC930065; organism=Citrus clementina; type=EST; length=698bp
CACAAGAGAGGAGGAGAGGAAAAAAAAAAAAAGATAAAAATTAAAGTTGT
GATGGCTGCAAGAAGGATTCCGCTTTTGCTTTCACGTTCATTCACGTCTT
CTTCACCTACTCTGTTTTCAAGAGGGAGGGATTCTAGTTTGTGCAGAGCT
GCTGCTGCTGCTGCCGCCTCCTGCGGATACAGCACGGTTTCTTCTGCTGC
TGCTGCTGCTGAAGATCCAATTACTCCGCCTGTTAAAGTTGATTATACTC
AGCTTCTAATTAATGGACAATTTGTTGATTCTGCATCAGGCAAAACGTTT
CCCACATTAGACCCCAGGACTGGTGATGTGATTACTCATGTAGCTGAAGG
TGAGGCTGAAGACGTCAACCGAGCAGTTTCTGCTGCTCGCAAGGCATTTG
ATGAAGGACCGTGGCCTAGGAAGACTGCTTATGAAAGGTCAAAAATAATT
TTGCGCTTCGCTGATTTGCTGGAAAGGCATAATGATGAAATTGCAGCCCT
TGAGACTTGGGATAACGGGAAGCCATTCGAGCAGTCTGCCCAGACTGAAG
TACCAATGACCACGCGTTTATTCCGGTACTACGCTGGTTGGGCAGATAAG
ATTCAGGGTCTCACTGCTCCAGCTGATGGACCGTACCATGTGCAAACCTT
GCACGAACCAATTGGTGTAGCAGGTCAAATTATCCCATGGAACTTTCC
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