FC930065

Overview
NameFC930065
Unique NameFC930065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: BETB_BURCJ (Betaine aldehyde dehydrogenase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=betB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.865e-27
Identity = 63/149 (42.28%), Postives = 88/149 (59.06%), Query Frame = 1
Query:  250 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            +L I G +VD+ SGKTF T DP TG+++  V +  A DV+RAV++A++   E  W   TA +RS+I+ R  DLL   NDE+AA+ET D GKP  ++   ++     +  YYAG A  I+GL  P      V T  EP+GV   I  WN+
Sbjct:    8 RLYIGGGYVDATSGKTFDTFDPATGELLAQVQQASAADVDRAVASAQEGQRE--WAAMTAMQRSRILRRAVDLLRERNDELAAIETRDTGKPIGETLAVDIVTGADVIEYYAGLATAIEGLQVPLRAESFVYTRREPLGVCAGIGAWNY 154          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: BETB_BURCC (Betaine aldehyde dehydrogenase OS=Burkholderia cenocepacia (strain MC0-3) GN=betB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.865e-27
Identity = 63/149 (42.28%), Postives = 88/149 (59.06%), Query Frame = 1
Query:  250 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            +L I G +VD+ SGKTF T DP TG+++  V +  A DV+RAV++A++   E  W   TA +RS+I+ R  DLL   NDE+AA+ET D GKP  ++   ++     +  YYAG A  I+GL  P      V T  EP+GV   I  WN+
Sbjct:    8 RLYIGGGYVDATSGKTFDTFDPATGELLAQVQQASAADVDRAVASAQEGQRE--WATMTAMQRSRILRRAVDLLRERNDELAAIETRDTGKPIGETLAVDIVTGADVIEYYAGLATAIEGLQVPLRAESFVYTRREPLGVCAGIGAWNY 154          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: YF19_SCHPO (Putative aldehyde dehydrogenase-like protein C9E9.09c OS=Schizosaccharomyces pombe GN=SPAC9E9.09c PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.888e-27
Identity = 70/163 (42.94%), Postives = 90/163 (55.21%), Query Frame = 1
Query:  220 ITPPVKVDYTQ---LLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFD-EGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            IT P    Y Q   L IN Q VDS  G       P T  +I  VA+ + EDV+ AV  AR AF  + PW + ++ +R + + R AD +E++ + +A++ET DNGK     A+ +V      FRYY GWADK  G T   D      T HEPIGV GQIIPWNF
Sbjct:   11 ITVPTGKTYIQPVGLFINNQHVDSVHGGRVKVYSPSTEKLICEVADADEEDVDIAVKVARAAFQTDAPWRKFSSAQRGRCLSRLADCIEQNLEYLASIETLDNGKSITL-ARGDVQAAADCFRYYGGWADKDYGQTIETDIKRFAYTRHEPIGVCGQIIPWNF 172          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: ALDH4_YEAST (Potassium-activated aldehyde dehydrogenase, mitochondrial OS=Saccharomyces cerevisiae GN=ALD4 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 4.888e-27
Identity = 67/167 (40.12%), Postives = 94/167 (56.29%), Query Frame = 1
Query:  217 PITPPVKV----DYTQ---LLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            P+T P+K+    +Y Q   L IN +FV S   KTF  ++P T + I H+ EG  +DV  AV AA +AF  G W      +R K + R A+L+E+  D IA++ET DNGK    S++ +V +     +  AG+ADKI G        +   T  +P+GV GQIIPWNF
Sbjct:   28 PMTVPIKLPNGLEYEQPTGLFINNKFVPSKQNKTFEVINPSTEEEICHIYEGREDDVEEAVQAADRAFSNGSWNGIDPIDRGKALYRLAELIEQDKDVIASIETLDNGKAI-SSSRGDVDLVINYLKSSAGFADKIDGRMIDTGRTHFSYTKRQPLGVCGQIIPWNF 193          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: BETB_BURCH (Betaine aldehyde dehydrogenase OS=Burkholderia cenocepacia (strain HI2424) GN=betB PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.337e-27
Identity = 62/149 (41.61%), Postives = 88/149 (59.06%), Query Frame = 1
Query:  250 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            +L I G +VD+ SGKTF T DP TG+++  V +  A DV+RAV++A++   E  W   TA +RS+I+ R  +LL   NDE+AA+ET D GKP  ++   ++     +  YYAG A  I+GL  P      V T  EP+GV   I  WN+
Sbjct:    8 RLYIGGGYVDATSGKTFDTFDPATGELLAQVQQASAADVDRAVASAQEGQRE--WAAMTAMQRSRILRRAVELLRERNDELAAIETRDTGKPIGETLAVDIVTGADVIEYYAGLATAIEGLQVPLRAESFVYTRREPLGVCAGIGAWNY 154          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: BETB_BURCA (Betaine aldehyde dehydrogenase OS=Burkholderia cenocepacia (strain AU 1054) GN=betB PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.337e-27
Identity = 62/149 (41.61%), Postives = 88/149 (59.06%), Query Frame = 1
Query:  250 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            +L I G +VD+ SGKTF T DP TG+++  V +  A DV+RAV++A++   E  W   TA +RS+I+ R  +LL   NDE+AA+ET D GKP  ++   ++     +  YYAG A  I+GL  P      V T  EP+GV   I  WN+
Sbjct:    8 RLYIGGGYVDATSGKTFDTFDPATGELLAQVQQASAADVDRAVASAQEGQRE--WAAMTAMQRSRILRRAVELLRERNDELAAIETRDTGKPIGETLAVDIVTGADVIEYYAGLATAIEGLQVPLRAESFVYTRREPLGVCAGIGAWNY 154          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: BETB_BURPP (Betaine aldehyde dehydrogenase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=betB PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.138e-26
Identity = 63/149 (42.28%), Postives = 86/149 (57.72%), Query Frame = 1
Query:  250 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            +L I G +VD+ SG+TF TLDP TG+ +  V +  A DV+RAV +A++   E  W   TA +RS+I+ R  DLL   NDE+AALET D GKP  ++   ++     +  YYAG A  I+G   P      V T  EP+GV   I  WN+
Sbjct:    8 RLYIGGGYVDATSGETFDTLDPATGETLASVQQASAADVDRAVRSAKQGQRE--WAALTAMQRSRILRRAVDLLRERNDELAALETRDTGKPIAETLAVDIVTGADVIEYYAGLATAIEGQQIPLRPTSFVYTRREPLGVCAGIGAWNY 154          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: BETB_BURXL (Betaine aldehyde dehydrogenase OS=Burkholderia xenovorans (strain LB400) GN=betB PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.058e-26
Identity = 61/149 (40.94%), Postives = 85/149 (57.05%), Query Frame = 1
Query:  250 QLLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            +L I G +VD+ SG+TF TLDP TG+ +  V +  A DV RAV +AR+   E  W   TA +RS+++ R  ++L   NDE+AALET D GKP  ++   ++     +  YYAG A  I+G   P      V T  EP+GV   I  WN+
Sbjct:    8 RLYIGGAYVDATSGETFDTLDPATGETLASVQQASAADVERAVQSAREGQRE--WAALTAMQRSRVLRRAVEILRERNDELAALETRDTGKPIAETLAVDIATGADVIEYYAGLATAIEGQQIPLRPTSFVYTRREPLGVCAGIGAWNY 154          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: ALDH5_YEAST (Aldehyde dehydrogenase 5, mitochondrial OS=Saccharomyces cerevisiae GN=ALD5 PE=1 SV=3)

HSP 1 Score: 116.701 bits (291), Expect = 1.204e-25
Identity = 67/163 (41.10%), Postives = 93/163 (57.06%), Query Frame = 1
Query:  217 PITPPVKVDYTQ---LLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            PIT P    Y Q   L ING+FV S   KTF  ++P   + IT V +   +DV+ AV+AA+KAF E  W       R+K +   ADL+E+H + +AA+E+ DNGK     A+ +V + ++  R   GWADKI G        +   ++ EP+GV GQIIPWNF
Sbjct:   31 PITLPNGFTYEQPTGLFINGEFVASKQKKTFDVINPSNEEKITTVYKAMEDDVDEAVAAAKKAF-ETKWSIVEPEVRAKALFNLADLVEKHQETLAAIESMDNGKSLF-CARGDVALVSKYLRSCGGWADKIYGNVIDTGKNHFTYSIKEPLGVCGQIIPWNF 191          
BLAST of FC930065 vs. ExPASy Swiss-Prot
Match: ALDH5_YEAS7 (Aldehyde dehydrogenase 5, mitochondrial OS=Saccharomyces cerevisiae (strain YJM789) GN=ALD5 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.204e-25
Identity = 67/163 (41.10%), Postives = 93/163 (57.06%), Query Frame = 1
Query:  217 PITPPVKVDYTQ---LLINGQFVDSASGKTFPTLDPRTGDVITHVAEGEAEDVNRAVSAARKAFDEGPWPRKTAYERSKIILRFADLLERHNDEIAALETWDNGKPFEQSAQTEVPMTTRLFRYYAGWADKIQGLTAPADGPYHVQTLHEPIGVAGQIIPWNF 696
            PIT P    Y Q   L ING+FV S   KTF  ++P   + IT V +   +DV+ AV+AA+KAF E  W       R+K +   ADL+E+H + +AA+E+ DNGK     A+ +V + ++  R   GWADKI G        +   ++ EP+GV GQIIPWNF
Sbjct:   31 PITLPNGFTYEQPTGLFINGEFVASKQKKTFDVINPSNEEKITTVYKAMEDDVDEAVAAAKKAF-ETKWSIVEPEVRAKALFNLADLVEKHQETLAAIESMDNGKSLF-CARGDVALVSKYLRSCGGWADKIYGNVIDTGKNHFTYSIKEPLGVCGQIIPWNF 191          
The following BLAST results are available for this feature:
BLAST of FC930065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 295
Match NameE-valueIdentityDescription
BETB_BURCJ2.865e-2742.28Betaine aldehyde dehydrogenase OS=Burkholderia cep... [more]
BETB_BURCC2.865e-2742.28Betaine aldehyde dehydrogenase OS=Burkholderia cen... [more]
YF19_SCHPO4.888e-2742.94Putative aldehyde dehydrogenase-like protein C9E9.... [more]
ALDH4_YEAST4.888e-2740.12Potassium-activated aldehyde dehydrogenase, mitoch... [more]
BETB_BURCH8.337e-2741.61Betaine aldehyde dehydrogenase OS=Burkholderia cen... [more]
BETB_BURCA8.337e-2741.61Betaine aldehyde dehydrogenase OS=Burkholderia cen... [more]
BETB_BURPP4.138e-2642.28Betaine aldehyde dehydrogenase OS=Burkholderia phy... [more]
BETB_BURXL7.058e-2640.94Betaine aldehyde dehydrogenase OS=Burkholderia xen... [more]
ALDH5_YEAST1.204e-2541.10Aldehyde dehydrogenase 5, mitochondrial OS=Sacchar... [more]
ALDH5_YEAS71.204e-2541.10Aldehyde dehydrogenase 5, mitochondrial OS=Sacchar... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34003D08EF PostHarvC1 Citrus clementina cDNA clone C34003D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930065 ID=FC930065; Name=FC930065; organism=Citrus clementina; type=EST; length=698bp
CACAAGAGAGGAGGAGAGGAAAAAAAAAAAAAGATAAAAATTAAAGTTGT
GATGGCTGCAAGAAGGATTCCGCTTTTGCTTTCACGTTCATTCACGTCTT
CTTCACCTACTCTGTTTTCAAGAGGGAGGGATTCTAGTTTGTGCAGAGCT
GCTGCTGCTGCTGCCGCCTCCTGCGGATACAGCACGGTTTCTTCTGCTGC
TGCTGCTGCTGAAGATCCAATTACTCCGCCTGTTAAAGTTGATTATACTC
AGCTTCTAATTAATGGACAATTTGTTGATTCTGCATCAGGCAAAACGTTT
CCCACATTAGACCCCAGGACTGGTGATGTGATTACTCATGTAGCTGAAGG
TGAGGCTGAAGACGTCAACCGAGCAGTTTCTGCTGCTCGCAAGGCATTTG
ATGAAGGACCGTGGCCTAGGAAGACTGCTTATGAAAGGTCAAAAATAATT
TTGCGCTTCGCTGATTTGCTGGAAAGGCATAATGATGAAATTGCAGCCCT
TGAGACTTGGGATAACGGGAAGCCATTCGAGCAGTCTGCCCAGACTGAAG
TACCAATGACCACGCGTTTATTCCGGTACTACGCTGGTTGGGCAGATAAG
ATTCAGGGTCTCACTGCTCCAGCTGATGGACCGTACCATGTGCAAACCTT
GCACGAACCAATTGGTGTAGCAGGTCAAATTATCCCATGGAACTTTCC
back to top