FC930067

Overview
NameFC930067
Unique NameFC930067
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930067 vs. ExPASy Swiss-Prot
Match: MPAC2_CARBE (Major pollen allergen Car b 1 isoform 2 OS=Carpinus betulus PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 6.917e-30
Identity = 64/159 (40.25%), Postives = 98/159 (61.64%), Query Frame = 1
Query:   85 MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFNYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHTKGDQXXXXXXXXXXXXXXMGLHKIVEAHLLANPDLY 561
            MGV  +E E ++ +  +R+FKAF L+ +  +PK+ PQA+ SVE ++G+GG G+IK   F++G    Y K R++E+D  NF+  YTVIEGD+LG  LE + +++K  A+  GGSI K++S+FH KG                  L + VE++LLA+   Y
Sbjct:    1 MGVFNYEAETTSVIPAARLFKAFILDGNKLIPKVSPQAVSSVENVEGNGGPGTIKKITFSEGSPVKYVKERVEEIDHTNFKYNYTVIEGDVLGDKLEKVSHELKIVAAPGGGSIVKISSKFHAKGYHEVNAEEMKGAKEMAEKLLRAVESYLLAHTAEY 159          
BLAST of FC930067 vs. ExPASy Swiss-Prot
Match: IPRT1_CATRO (Probable intracellular pathogenesis-related protein T1 OS=Catharanthus roseus GN=PCKR3 PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.541e-29
Identity = 65/157 (41.40%), Postives = 98/157 (62.42%), Query Frame = 1
Query:   85 MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFNYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHTKGDQXXXXXXXXXXXXXXMGLHKIVEAHLLANPD 555
            MGV+ ++ E+ ++++ +++FKAF L+    + K +P  IKSVEILQGDGGAG+IK+ +F +GG     KH ++ELDKDN   KY++++G+ L   L+SI Y +K E SG+ GS+CK  + FH K                   + K VEA++ ANPD
Sbjct:    1 MGVISYDMEIKSSLSAAKLFKAFVLDVGTLINKALPNVIKSVEILQGDGGAGTIKLVHFGEGGPVPSVKHHVEELDKDNMSYKYSIVDGEALMPGLQSISYVIKIEPSGH-GSVCKHNTTFHFKAGSNINEDEIKAGKERAAEMIKAVEAYVQANPD 156          
BLAST of FC930067 vs. ExPASy Swiss-Prot
Match: MPAC1_CARBE (Major pollen allergen Car b 1 isoforms 1A and 1B OS=Carpinus betulus PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.305e-28
Identity = 64/159 (40.25%), Postives = 95/159 (59.75%), Query Frame = 1
Query:   85 MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFNYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHTKGDQXXXXXXXXXXXXXXMGLHKIVEAHLLANPDLY 561
            MGV  +E E  + +  +R+FK++ L+    +PK+ PQ I SVE + G+GG G+IK   FA+G  F + K R+DE+D  NF+  YTVIEGD+LG  LE + +++K  A+  GGSI K++S+FH KG                  L + VE++LLA+   Y
Sbjct:    1 MGVFNYEAETPSVIPAARLFKSYVLDGDKLIPKVAPQVISSVENVGGNGGPGTIKNITFAEGIPFKFVKERVDEVDNANFKYNYTVIEGDVLGDKLEKVSHELKIVAAPGGGSIVKISSKFHAKGYHEVNAEKMKGAKEMAEKLLRAVESYLLAHTAEY 159          
BLAST of FC930067 vs. ExPASy Swiss-Prot
Match: PR1_MEDSA (Class-10 pathogenesis-related protein 1 OS=Medicago sativa GN=MSPR10-1 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.083e-26
Identity = 60/157 (38.22%), Postives = 93/157 (59.24%), Query Frame = 1
Query:   85 MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFNYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHTKGDQXXXXXXXXXXXXXXMGLHKIVEAHLLANPD 555
            MGV  FE E ++ VAP+R++KA   ++ N +PK++  AI+S+EI++G+GGAG+IK   F +GG   Y  H++D +D  NF   Y+++ G  L   +E I ++ K  A  +GGS  K+  ++ TKGD                GL K +E ++LANPD
Sbjct:    1 MGVFNFEDETTSIVAPARLYKALVTDSDNLIPKVI-DAIQSIEIVEGNGGAGTIKKLTFVEGGETKYDLHKVDLVDDVNFAYNYSIVGGGGLPDTVEKISFESKLSAGPDGGSTAKLTVKYFTKGDAAPSEEEIKGGKARGDGLFKALEGYVLANPD 156          
BLAST of FC930067 vs. ExPASy Swiss-Prot
Match: PR1_PHAVU (Pathogenesis-related protein 1 OS=Phaseolus vulgaris PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 8.750e-25
Identity = 57/156 (36.54%), Postives = 87/156 (55.77%), Query Frame = 1
Query:   85 MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFNYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHTKGDQXXXXXXXXXXXXXXMGLHKIVEAHLLANP 552
            MGV  FE + ++ VAP+ ++KA   +A    PK +P + KSVEI++G+GG G+IK  +F + G   +  H+I+ +D+ N    Y+++ G  L    E I +D K     NGGS+ K++  +H+KGD                 L K VEA+LLANP
Sbjct:    1 MGVFTFEDQTTSPVAPATLYKAVAKDADTIFPKALPDSFKSVEIVEGNGGPGTIKKISFVEDGETKFVLHKIESIDEANLGYSYSIVGGVALPETAEKITFDSKLSDGPNGGSLIKLSITYHSKGDAPPNEDELKAGKAKSDSLFKAVEAYLLANP 156          
BLAST of FC930067 vs. ExPASy Swiss-Prot
Match: RAP_TAROF (Root allergen protein OS=Taraxacum officinale PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.343e-24
Identity = 52/151 (34.44%), Postives = 89/151 (58.94%), Query Frame = 1
Query:  103 EKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFNYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHTKGDQXXXXXXXXXXXXXXMGLHKIVEAHLLANPD 555
            E E++++++PS +FKAF ++     PK  P+  KS++ ++GDGG G+IK   ++DG  F  +KH++D +D +NF   YT+ EGD+L  I+ES  + +KF  S +GGS+ K +  F  KGD                   K +E +++++P+
Sbjct:    5 EFEITSSLSPSNIFKAFVIDFDTIAPKAEPETYKSIKTIEGDGGVGTIKSITYSDGVPFTSSKHKVDAIDSNNFSISYTIFEGDVLMGIIESGTHHLKFLPSADGGSVYKHSMVFKCKGDAKLTDENVSLMKEGLKKTFKAIETYVISHPE 155          
BLAST of FC930067 vs. ExPASy Swiss-Prot
Match: L18B_LUPLU (Protein LlR18B OS=Lupinus luteus GN=LLR18B PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.672e-24
Identity = 60/157 (38.22%), Postives = 95/157 (60.51%), Query Frame = 1
Query:   85 MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFNYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHTKGDQXXXXXXXXXXXXXXMGLHKIVEAHLLANPD 555
            MGV  FE E  +AVA +++FKA   ++ + +PK++ Q I+SVEI++G+GG G++K    + GG+ +Y  H+ID +D+ +F   Y+++ G  L   LE I ++ K  +  +GGSI K+  +FHTKGD                GL K VE ++LANP+
Sbjct:    1 MGVFAFEDEHPSAVAQAKLFKALTKDSDDIIPKVIEQ-IQSVEIVEGNGGPGTVKKITASHGGHTSYVLHKIDAIDEASFEYNYSIVGGTGLDESLEKITFESKLLSGPDGGSIGKIKVKFHTKGD-VLSDAVREEAKARGTGLFKAVEGYVLANPN 155          
BLAST of FC930067 vs. ExPASy Swiss-Prot
Match: ABR18_PEA (ABA-responsive protein ABR18 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.675e-24
Identity = 55/157 (35.03%), Postives = 91/157 (57.96%), Query Frame = 1
Query:   85 MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFNYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHTKGDQXXXXXXXXXXXXXXMGLHKIVEAHLLANPD 555
            MGV  +E + ++ V P+++FKA   +A   +PK+V  +IK+VEIL+G+GG G++K   F +GG   Y  H+++ +D   F   Y+++ G  +  I+E I ++ K     NGGS+ K+  ++HTKGD                 L K +EA++LANP+
Sbjct:    1 MGVFTYENDTTSTVPPAKLFKAVVHDADLIVPKVV-DSIKTVEILEGNGGPGTVKKLTFVEGGQTLYVLHKVEAIDDAKFEYNYSIVGGVGISDIVEKISFEAKLFEGPNGGSVGKMIVKYHTKGDAKPIEKEVEEGKAKGDALFKAIEAYVLANPN 156          
BLAST of FC930067 vs. ExPASy Swiss-Prot
Match: DRR4_PEA (Disease resistance response protein DRRG49-C OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.264e-23
Identity = 56/157 (35.67%), Postives = 90/157 (57.32%), Query Frame = 1
Query:   85 MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFNYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHTKGDQXXXXXXXXXXXXXXMGLHKIVEAHLLANPD 555
            MGV  FE+E ++ VAP+ + KA   +A    PK++  AIKS+EI++G+GG G+IK   F + G   Y  H+++ +D  N+   Y+++ G  L   +E I ++ K  A  NGGSI K++ +++TKGD                G+ K +E + +ANPD
Sbjct:    1 MGVFNFEEEATSIVAPATLHKALVTDADILTPKVI-DAIKSIEIVEGNGGPGTIKKLTFVEDGETKYVLHKVELVDDANWANNYSIVGGVGLPDTVEKISFEAKLSAGPNGGSIAKLSVKYYTKGDAIPSEEEIKNGKAKGEGIFKALEGYCVANPD 156          
BLAST of FC930067 vs. ExPASy Swiss-Prot
Match: ABR17_PEA (ABA-responsive protein ABR17 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.155e-23
Identity = 55/156 (35.26%), Postives = 90/156 (57.69%), Query Frame = 1
Query:   85 MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFNYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHTKGDQXXXXXXXXXXXXXXMGLHKIVEAHLLANP 552
            MGV  F+ E  + VAP +++KA   +A   +PK++ +A + VEI++G+GG G+IK  +  + G  NY  H++D +D+ NF   Y+++ G  L   LE + ++    A  +GGSI K++ ++HTKGD                GL K +E ++LANP
Sbjct:    1 MGVFVFDDEYVSTVAPPKLYKALAKDADEIVPKVIKEA-QGVEIIEGNGGPGTIKKLSILEDGKTNYVLHKLDAVDEANFGYNYSLVGGPGLHESLEKVAFETIILAGSDGGSIVKISVKYHTKGDAALSDAVRDETKAKGTGLIKAIEGYVLANP 155          
The following BLAST results are available for this feature:
BLAST of FC930067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
MPAC2_CARBE6.917e-3040.25Major pollen allergen Car b 1 isoform 2 OS=Carpinu... [more]
IPRT1_CATRO1.541e-2941.40Probable intracellular pathogenesis-related protei... [more]
MPAC1_CARBE1.305e-2840.25Major pollen allergen Car b 1 isoforms 1A and 1B O... [more]
PR1_MEDSA2.083e-2638.22Class-10 pathogenesis-related protein 1 OS=Medicag... [more]
PR1_PHAVU8.750e-2536.54Pathogenesis-related protein 1 OS=Phaseolus vulgar... [more]
RAP_TAROF4.343e-2434.44Root allergen protein OS=Taraxacum officinale PE=1... [more]
L18B_LUPLU5.672e-2438.22Protein LlR18B OS=Lupinus luteus GN=LLR18B PE=1 SV... [more]
ABR18_PEA9.675e-2435.03ABA-responsive protein ABR18 OS=Pisum sativum PE=2... [more]
DRR4_PEA1.264e-2335.67Disease resistance response protein DRRG49-C OS=Pi... [more]
ABR17_PEA2.155e-2335.26ABA-responsive protein ABR17 OS=Pisum sativum PE=2... [more]

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Properties
Property NameValue
Genbank descriptionC34003D10EF PostHarvC1 Citrus clementina cDNA clone C34003D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930067 ID=FC930067; Name=FC930067; organism=Citrus clementina; type=EST; length=744bp
GACGAAAAATCGATCAAAATCATTTTTTTTCTTTTCTAATAGAGCAAGTT
CATTATCACAATTATTTTCAATTGTATTGACAACATGGGTGTCATGCGCT
TTGAGAAAGAGGTCTCAGCTGCTGTTGCGCCATCTAGGATGTTCAAAGCT
TTCTTCCTTGAGGCTCACAATTTTCTGCCAAAATTGGTGCCTCAAGCAAT
CAAGAGCGTTGAGATTCTCCAAGGAGATGGAGGTGCTGGTAGCATTAAAA
TAACCAACTTTGCTGATGGTGGTAATTTCAACTACGCGAAGCATAGAATT
GATGAACTTGACAAAGACAACTTTAGGTGCAAGTACACTGTGATTGAAGG
AGATATGTTGGGGACAATCCTGGAATCAATTGTATACGATGTTAAATTCG
AGGCTTCTGGCAATGGTGGATCCATCTGCAAGGTTGCTTCTGAGTTCCAT
ACAAAAGGTGATCAAGAGATCAAAGAGGAGGCACTCAAGGAAGCTGAAGA
GAAAGCAATGGGATTGCACAAGATTGTGGAGGCGCATCTCTTGGCAAATC
CTGATCTCTATGCTTGAGTTAAATTATTTATCTTTGGTTTCATTTTACTA
TTTAAATATATGCATGGCTACTGGTACTGAATAAGGGTTGTGTCACTATA
TATGATTTGTGAGCTTTATTATATATGTTTTTTATTTCTTTGCGCGCAGT
GGAATGTTTACTGAGCCTTCATGTCGTGCTGTGATTTGTCATAA
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