FC930067

Overview
NameFC930067
Unique NameFC930067
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930067 vs. ExPASy Swiss-Prot
Match: ALL2_APIGR (Major allergen Api g 2 OS=Apium graveolens PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.308e-20
Identity = 55/155 (35.48%), Postives = 84/155 (54.19%), Query Frame = 1
Query:   85 MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFNYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHTKGDQXXXXXXXXXXXXXXMGLHKIVEAHLLAN 549
            MGV +   E  + V+  +M++ F L+     PK++PQ IKSVEIL+GDGG G++K+ +  +   +   K ++D +DK      YT I GD+L  +LES+V +     + +GG I K  + ++TKGD                   K VEA+LLAN
Sbjct:    1 MGVQKTVVEAPSTVSAEKMYQGFLLDMDTVFPKVLPQLIKSVEILEGDGGVGTVKLVHLGEATEYTTMKQKVDVIDKAGLAYTYTTIGGDILVDVLESVVNEFVVVPT-DGGCIVKNTTIYNTKGDAVLPEDKIKEATEKSALAFKAVEAYLLAN 154          
BLAST of FC930067 vs. ExPASy Swiss-Prot
Match: RNS2_PANGI (Ribonuclease 2 OS=Panax ginseng PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.446e-19
Identity = 57/154 (37.01%), Postives = 82/154 (53.25%), Query Frame = 1
Query:   88 GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFNYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHTKGDQXXXXXXXXXXXXXXMGLHKIVEAHLLAN 549
            GV + E +  + V   ++FK  FL+    +PK  P+ IKSV++L+G+GG G+IK     D   FN  K RID +D+  F   YT+I GD+L  I+ESI    K   + +GGS     + ++T GD               + L K VEA+LLAN
Sbjct:    1 GVQKTETQAISPVPAEKLFKGSFLDMDTVVPKAFPEGIKSVQVLEGNGGVGTIKNVTLGDATPFNTMKTRIDAIDEHAFTYTYTIIGGDILLDIIESIENHFKIVPT-DGGSTITQTTIYNTIGDAVIPEENIKDATDKSIQLFKAVEAYLLAN 153          
BLAST of FC930067 vs. ExPASy Swiss-Prot
Match: PR1_ASPOF (Pathogenesis-related protein 1 OS=Asparagus officinalis GN=PR1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.726e-18
Identity = 60/154 (38.96%), Postives = 76/154 (49.35%), Query Frame = 1
Query:  109 EVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSI---KITNFADGGNFNYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHTKGDQXXXXXXXXXXXXXXMGLHKIVEAHLLANPDLY 561
            EV+  VA  RMFKA  L+ HN  PK+VP  I    ++ GDG  G+I   KI N A    F+Y K R+D +D D F  K T++EG  LG + E      KFE S NGG + KV + +                    M   K  EA+LLANP  Y
Sbjct:    9 EVAVNVAAGRMFKAAMLDWHNLGPKIVPDFIAGGSVVSGDGSVGTIREIKINNPAIP--FSYVKERLDFVDHDKFEVKQTLVEGGGLGKMFECATTHFKFEPSSNGGCLVKVTASYKILPGVADESAKAKEGITNHM---KATEAYLLANPTAY 157          
BLAST of FC930067 vs. ExPASy Swiss-Prot
Match: DAU1_DAUCA (Major allergen Dau c 1 OS=Daucus carota PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.726e-18
Identity = 52/155 (33.55%), Postives = 80/155 (51.61%), Query Frame = 1
Query:   85 MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFNYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHTKGDQXXXXXXXXXXXXXXMGLHKIVEAHLLAN 549
            MG      E++++V+  ++F    L+    +PK  P A KSVE+ +GDGGAG+++I    +G        R D ++K+      TVI+GD+L   +ESI   +    + +GGSI K  + FHTKGD                 L K +EA+L+AN
Sbjct:    1 MGAQSHSLEITSSVSAEKIFSGIVLDVDTVIPKAAPGAYKSVEV-KGDGGAGTVRIITLPEGSPITSMTVRTDAVNKEALTYDSTVIDGDILLGFIESIETHLVVVPTADGGSITKTTAIFHTKGDAVVPEENIKFADAQNTALFKAIEAYLIAN 154          
The following BLAST results are available for this feature:
BLAST of FC930067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
ALL2_APIGR1.308e-2035.48Major allergen Api g 2 OS=Apium graveolens PE=1 SV... [more]
RNS2_PANGI1.446e-1937.01Ribonuclease 2 OS=Panax ginseng PE=1 SV=1[more]
PR1_ASPOF2.726e-1838.96Pathogenesis-related protein 1 OS=Asparagus offici... [more]
DAU1_DAUCA2.726e-1833.55Major allergen Dau c 1 OS=Daucus carota PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34003D10EF PostHarvC1 Citrus clementina cDNA clone C34003D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930067 ID=FC930067; Name=FC930067; organism=Citrus clementina; type=EST; length=744bp
GACGAAAAATCGATCAAAATCATTTTTTTTCTTTTCTAATAGAGCAAGTT
CATTATCACAATTATTTTCAATTGTATTGACAACATGGGTGTCATGCGCT
TTGAGAAAGAGGTCTCAGCTGCTGTTGCGCCATCTAGGATGTTCAAAGCT
TTCTTCCTTGAGGCTCACAATTTTCTGCCAAAATTGGTGCCTCAAGCAAT
CAAGAGCGTTGAGATTCTCCAAGGAGATGGAGGTGCTGGTAGCATTAAAA
TAACCAACTTTGCTGATGGTGGTAATTTCAACTACGCGAAGCATAGAATT
GATGAACTTGACAAAGACAACTTTAGGTGCAAGTACACTGTGATTGAAGG
AGATATGTTGGGGACAATCCTGGAATCAATTGTATACGATGTTAAATTCG
AGGCTTCTGGCAATGGTGGATCCATCTGCAAGGTTGCTTCTGAGTTCCAT
ACAAAAGGTGATCAAGAGATCAAAGAGGAGGCACTCAAGGAAGCTGAAGA
GAAAGCAATGGGATTGCACAAGATTGTGGAGGCGCATCTCTTGGCAAATC
CTGATCTCTATGCTTGAGTTAAATTATTTATCTTTGGTTTCATTTTACTA
TTTAAATATATGCATGGCTACTGGTACTGAATAAGGGTTGTGTCACTATA
TATGATTTGTGAGCTTTATTATATATGTTTTTTATTTCTTTGCGCGCAGT
GGAATGTTTACTGAGCCTTCATGTCGTGCTGTGATTTGTCATAA
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