FC930069

Overview
NameFC930069
Unique NameFC930069
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: THS_METTL (Thermosome subunit OS=Methanococcus thermolithotrophicus GN=ths PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.624e-37
Identity = 83/197 (42.13%), Postives = 129/197 (65.48%), Query Frame = 2
Query:  140 RPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKGCHLDLIK 730
            +P ++L   E   R  G DAQ+ N+ AG+ +   +R++LGPKGMDKML    GD+ +TNDG TIL++M V++  AK+++E++++Q+ E+GDGTT  VV+AG LL +AE+LL++ +HP  + +GY++A + A E L+ IA   +   +D E L +  MT++  K   + K +L E+ V+AV AV D E      DLIK
Sbjct:    5 QPVVVL--PENVKRFMGRDAQRMNILAGRIIGETVRSTLGPKGMDKMLVDDLGDIVVTNDGVTILKEMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVIAGELLRKAEELLDQNVHPTIVIKGYQLAVQKAQEVLKEIA--MDVKADDKEILHKIAMTSITGKGAEKAKEKLGEMIVEAVTAVVD-ESGKVDKDLIK 196          
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: THS2_HALVO (Thermosome subunit 2 OS=Halobacterium volcanii GN=cct2 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.593e-37
Identity = 85/194 (43.81%), Postives = 125/194 (64.43%), Query Frame = 2
Query:  137 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKGCHL 718
            G+P I++   E+  R++  DAQ+ N+ A +AVA  +R++LGPKGMDKML    GDVTITNDG TIL++MD+DN  A+++VE++ +Q+ E GDGTT  V +AG LL+ AE LLE+ IHP  I  G+ +AS  A E ++ IA++ +   +D E L +   T++  K     K  LA++ V+AV  V      G H+
Sbjct:    8 GQPMIIMG--EDAQRVKDRDAQEYNIRAARAVAEAVRSTLGPKGMDKMLVDSMGDVTITNDGVTILKEMDIDNPTAEMIVEVAETQEDEAGDGTTTAVAIAGELLKNAEDLLEQDIHPTAIIRGFNLASEKAREEIDDIAERVD--PDDEELLKKVAETSMTGKSSELNKELLADLIVRAVRQVTVEANDGSHV 197          
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: THSB_METTH (Thermosome subunit beta OS=Methanobacterium thermoautotrophicum GN=thsB PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.253e-36
Identity = 83/185 (44.86%), Postives = 121/185 (65.41%), Query Frame = 2
Query:  140 RPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVAD 694
            +P ++L   E  SR  G DAQ+ N+ AGK +A  +RT+LGPKGMDKML    GD+ +TNDG TIL++MD+++  AK++VE++++Q+ E+GDGTT  V++AG LL++AE LLE  IHP  IA GY  A+  A E L+ IA       +D + L++  MT +  K   + +  LAE+ V AV  V +
Sbjct:    6 QPILVL--PEGTSRYLGRDAQRMNILAGKILAETVRTTLGPKGMDKMLVDSLGDIVVTNDGVTILKEMDIEHPAAKMLVEVAKTQEDEVGDGTTTAVIIAGELLKKAENLLEMEIHPTIIAMGYRQAAEKAQEILDDIA----IDASDRDTLMKVAMTAMTGKGTEKAREPLAELIVDAVKQVEE 184          
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: THSB_ARCFU (Thermosome subunit beta OS=Archaeoglobus fulgidus GN=thsB PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.253e-36
Identity = 85/186 (45.70%), Postives = 122/186 (65.59%), Query Frame = 2
Query:  137 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVAD 694
            G+P ++LR  E   R  G DAQ+ N+ A + +A  +R++LGPKGMDKML    GDV ITNDG TIL+++DV++  AK+++E++++QD E+GDGTT  VV+AG LL++AE+LL++ IHP  IA GY  A+  A+E L  IA       +D E L +   T +  K       +LAEIAV AV  +A+
Sbjct:    6 GQPVLILR--EGTQRTVGRDAQRMNIMAARVIAEAVRSTLGPKGMDKMLVDSLGDVVITNDGVTILKEIDVEHPAAKMIIEVAKTQDNEVGDGTTTAVVLAGELLKRAEELLDQEIHPAIIANGYRYAAEKALEILNEIA--IPISKDDDEILKKIATTAMTGKGAEVAIDKLAEIAVNAVKMIAE 187          
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: THSA_THEK1 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=thsA PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.253e-36
Identity = 84/186 (45.16%), Postives = 125/186 (67.20%), Query Frame = 2
Query:  137 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVAD 694
            G+P ++L   E   R  G DAQ+ N+ A + +A  +RT+LGPKGMDKML    GD+ +TNDGATIL+++D+ +  AK+MVE++++QD E GDGTT  VV+AG LL +AE+LL++ IHP  I +GY +A+  A E L+ IA + +   +D E L++   T++  K     K  LA++AV+AV  VA+
Sbjct:    6 GQPVVIL--PEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDEIAIRVD--PDDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAE 187          
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: THSA_PYRKO (Thermosome subunit alpha OS=Pyrococcus kodakaraensis GN=thsA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.253e-36
Identity = 84/186 (45.16%), Postives = 125/186 (67.20%), Query Frame = 2
Query:  137 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVAD 694
            G+P ++L   E   R  G DAQ+ N+ A + +A  +RT+LGPKGMDKML    GD+ +TNDGATIL+++D+ +  AK+MVE++++QD E GDGTT  VV+AG LL +AE+LL++ IHP  I +GY +A+  A E L+ IA + +   +D E L++   T++  K     K  LA++AV+AV  VA+
Sbjct:    6 GQPVVIL--PEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDEIAIRVD--PDDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAE 187          
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: THSA_HALSA (Thermosome subunit alpha OS=Halobacterium salinarium GN=thsA PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.253e-36
Identity = 82/185 (44.32%), Postives = 120/185 (64.86%), Query Frame = 2
Query:  140 RPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVAD 694
            +P I+L   E+  R  G DAQ  N++AGKAVA  +RT+LGPKGMDKML    G+V +TNDG TIL++MD+++  A ++VE++ +Q+ E+GDGTT  VV++G LL +AE LLE+ IH   +A+GY  A+  A E L+  A   +   +D E L +   T +  K     K  L+++ V+AV +VAD
Sbjct:    8 QPLIVL--SEDSQRTSGEDAQSMNITAGKAVAESVRTTLGPKGMDKMLVDSSGEVVVTNDGVTILKEMDIEHPAANMIVEVAETQETEVGDGTTTSVVVSGELLSEAETLLEQDIHATTLAQGYRQAAEKAKELLDDAA--IDVSADDTETLEKIAATAMTGKGAENAKGVLSDLVVRAVQSVAD 188          
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: THSB_SULSH (Thermosome subunit beta OS=Sulfolobus shibatae GN=thsB PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.636e-36
Identity = 84/196 (42.86%), Postives = 126/196 (64.29%), Query Frame = 2
Query:  137 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKGCHLDL 724
            G P I+L+  E  SR  G +A +AN++A KA+   L+++ GP+GMDKM     GD+TITNDGATIL++MD+ +   KL+V++++ QD E  DGT   V++AG L ++AE LL + IHP  I  GY+ A  IA++ ++ IAQ     +ND + L +  +T+L SK V   +  LA++ VKAV  VA+L     ++DL
Sbjct:   12 GIPVIILK--EGSSRTYGKEALRANIAAVKAIEEALKSTYGPRGMDKMFVDSLGDITITNDGATILDKMDLQHPTGKLLVQIAKGQDEETADGTKTAVILAGELAKKAEDLLYKEIHPTIIVSGYKKAEEIALKTIQDIAQ--PVSINDTDVLRKVALTSLGSKAVAGAREYLADLVVKAVAQVAELRGDKWYVDL 203          
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: THSA_THEAC (Thermosome subunit alpha OS=Thermoplasma acidophilum GN=thsA PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.636e-36
Identity = 84/185 (45.41%), Postives = 125/185 (67.57%), Query Frame = 2
Query:  143 PFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADL 697
            P ++L+  E   R +G +AQ+ N+ A KA+A  +RT+LGPKGMDKML    GD+ I+NDGATIL++MDV++  AK++VE+S++QD  +GDGTT  VV++G LL+QAE LL++G+HP  I+ GY +A   A + ++ IA+K      D   L +  +T L+ K        LA++ VKAV AVA++
Sbjct:    7 PILVLK--EGTQREQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEK----STDDATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEV 185          
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPD_CANGA (T-complex protein 1 subunit delta OS=Candida glabrata GN=CCT4 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.636e-36
Identity = 80/186 (43.01%), Postives = 130/186 (69.89%), Query Frame = 2
Query:  173 KSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKGCHLDLIK 730
            K++ +  + ++AN+ A +AVA  +RTSLGPKGMDKM+++  G++ I+NDG TIL+QM + + +AK++V++S +QD E GDGTT VV++ G+LL  A++LL +GIHP  IAE ++ A+R +VE L  I       L+D E L++   T+L+SK+V++    L+ +AV AVL++ + + K   L+ I+
Sbjct:   13 KNKEKPQEVRRANIVAARAVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPVAKMLVDVSAAQDSEAGDGTTSVVILTGALLGAADRLLNKGIHPTIIAESFQKAARRSVETLLEICH--PVSLDDREDLIRAASTSLSSKIVSQYSSFLSPLAVDAVLSITEKDSKTVDLNDIR 196          
The following BLAST results are available for this feature:
BLAST of FC930069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 440
Match NameE-valueIdentityDescription
THS_METTL5.624e-3742.13Thermosome subunit OS=Methanococcus thermolithotro... [more]
THS2_HALVO9.593e-3743.81Thermosome subunit 2 OS=Halobacterium volcanii GN=... [more]
THSB_METTH1.253e-3644.86Thermosome subunit beta OS=Methanobacterium thermo... [more]
THSB_ARCFU1.253e-3645.70Thermosome subunit beta OS=Archaeoglobus fulgidus ... [more]
THSA_THEK11.253e-3645.16Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
THSA_PYRKO1.253e-3645.16Thermosome subunit alpha OS=Pyrococcus kodakaraens... [more]
THSA_HALSA1.253e-3644.32Thermosome subunit alpha OS=Halobacterium salinari... [more]
THSB_SULSH1.636e-3642.86Thermosome subunit beta OS=Sulfolobus shibatae GN=... [more]
THSA_THEAC1.636e-3645.41Thermosome subunit alpha OS=Thermoplasma acidophil... [more]
TCPD_CANGA1.636e-3643.01T-complex protein 1 subunit delta OS=Candida glabr... [more]

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Properties
Property NameValue
Genbank descriptionC34003D12EF PostHarvC1 Citrus clementina cDNA clone C34003D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930069 ID=FC930069; Name=FC930069; organism=Citrus clementina; type=EST; length=732bp
CTGTTCATTGTTCACTAAGCGACAAAAGCACTGAAAGTTCTACACTCTTC
TTGTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTGAGAATCAA
GGATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGACCGTTCAT
ATTATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACTCGATGCTC
AGAAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCCTCCGAACC
TCCCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCCGACGGTGA
CGTCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGATGGATGTTG
ACAATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTCAGGACTAT
GAAATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGTTCACTTTT
AGAGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTATTCGGATTG
CAGAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATTTAGAACGT
ATAGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCTTTGGTTCA
AACTTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTGCAAGCGCA
GATTGGCTGAGATTGCTGTCAAAGCAGTTCTTGCTGTGGCAGACTTAGAG
AGGAAGGGATGTCATTTAGATTTGATTAAGNT
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