FC930069

Overview
NameFC930069
Unique NameFC930069
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPA_DICDI (T-complex protein 1 subunit alpha OS=Dictyostelium discoideum GN=tcp1 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.697e-30
Identity = 69/178 (38.76%), Postives = 114/178 (64.04%), Query Frame = 2
Query:  179 RLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHL-ERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKG 709
            R+ G + +  NV A  A+A I++TS GP G+DKML    G + +TNDGATIL+++D+++  AK++V+LS  QD E+GDGTT VV++A  LL++A +L+ R +HP  I  G+ +A   A++++ E +A K E    D   +V    T+++SK +N      ++I ++A+  V  ++ KG
Sbjct:   12 RISGNEVRAQNVLAVTAIANIVKTSFGPIGLDKMLIDNIGSIVVTNDGATILQKIDIEHPAAKILVQLSELQDQEVGDGTTTVVILAAELLKRANELVARKVHPTVIISGFRLACTEAIKYINETLAVKVETLPKDF--IVNIAKTSMSSKTINDDSDFFSKIVIEAITRVKTIDYKG 187          
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPA_YEAST (T-complex protein 1 subunit alpha OS=Saccharomyces cerevisiae GN=TCP1 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.136e-29
Identity = 71/177 (40.11%), Postives = 107/177 (60.45%), Query Frame = 2
Query:  179 RLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKG 709
            ++ G D +  NV A  AVA ++++SLGP G+DKML    GD T+TNDGATIL  +DV +   K++VEL++ QD EIGDGTT VV++A  LL++A +L++  IHP  I  G+ +A R A+  +  +       L   E L+    T+++SK++       + + V A+LAV     KG
Sbjct:   19 KISGDDIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPAGKILVELAQQQDREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSVDTLGK-ETLINIAKTSMSSKIIGADSDFFSNMVVDALLAVKTQNSKG 194          
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPH_PONAB (T-complex protein 1 subunit eta OS=Pongo abelii GN=CCT7 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.483e-29
Identity = 71/187 (37.97%), Postives = 119/187 (63.64%), Query Frame = 2
Query:  143 PFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA--QKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADL 697
            P ILL++  + S+  G+    +N+SA + +A  +RT+LGP+GMDK++    G  TI+NDGATIL+ +DV +  AK +V++++SQD E+GDGTT V ++A   L+Q +  +E G+HP  I   +  A+++AV  ++ IA   K    +   + L +  MT L+SK++++ K   A++ V AV+ + DL
Sbjct:    5 PVILLKEGTDSSQ--GIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKADKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLDDL 189          
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPH_HUMAN (T-complex protein 1 subunit eta OS=Homo sapiens GN=CCT7 PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.483e-29
Identity = 71/187 (37.97%), Postives = 119/187 (63.64%), Query Frame = 2
Query:  143 PFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA--QKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADL 697
            P ILL++  + S+  G+    +N+SA + +A  +RT+LGP+GMDK++    G  TI+NDGATIL+ +DV +  AK +V++++SQD E+GDGTT V ++A   L+Q +  +E G+HP  I   +  A+++AV  ++ IA   K    +   + L +  MT L+SK++++ K   A++ V AV+ + DL
Sbjct:    5 PVILLKEGTDSSQ--GIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKADKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLDDL 189          
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPG_MOUSE (T-complex protein 1 subunit gamma OS=Mus musculus GN=Cct3 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.937e-29
Identity = 71/197 (36.04%), Postives = 114/197 (57.87%), Query Frame = 2
Query:  140 RPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKGCHLDLIK 730
            RP ++L Q  ++    G   Q  N++A K +A I+RT LGPK M KML  P G + +TNDG  IL ++ V +  AK M+E+SR+QD E+GDGTT V+++AG +L  AE  LE+ +HP  +   Y MA    +  L++I+   +  +N+ E ++    +++ +K+++R       IA+ AV  V   E     +D+ K
Sbjct:    5 RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRMALDDMISTLKKISTPVD--VNNREMMLSIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKK 197          
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPH_MOUSE (T-complex protein 1 subunit eta OS=Mus musculus GN=Cct7 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.530e-29
Identity = 70/187 (37.43%), Postives = 120/187 (64.17%), Query Frame = 2
Query:  143 PFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA--QKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADL 697
            P ILL++  + S+  G+    +N+SA + +A  +RT+LGP+GMDK++    G  TI+NDGATIL+ +DV +  AK +V++++SQD E+GDGTT V ++A   L+Q +  +E G+HP  I   +  A+++AV  ++ IA   K +  +   + L +  MT L+SK++++ K   A++ V AV+ + +L
Sbjct:    5 PVILLKEGTDSSQ--GIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKQDKVEQRKMLEKCAMTALSSKLISQQKVFFAKMVVDAVMMLDEL 189          
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPG_RAT (T-complex protein 1 subunit gamma OS=Rattus norvegicus GN=Cct3 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.305e-29
Identity = 71/197 (36.04%), Postives = 114/197 (57.87%), Query Frame = 2
Query:  140 RPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKGCHLDLIK 730
            RP ++L Q  ++    G   Q  N++A K +A I+RT LGPK M KML  P G + +TNDG  IL ++ V +  AK M+E+SR+QD E+GDGTT V+++AG +L  AE  LE+ +HP  +   Y MA    V  L++I+   +  +N+ + ++    +++ +K+++R       IA+ AV  V   E     +D+ K
Sbjct:    5 RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRMALDDMVSTLKKISTPVD--VNNRDMMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKK 197          
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPA_CAEEL (T-complex protein 1 subunit alpha OS=Caenorhabditis elegans GN=cct-1 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.305e-29
Identity = 68/172 (39.53%), Postives = 112/172 (65.12%), Query Frame = 2
Query:  179 RLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL--EPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAV 688
            R  G   +  NV+A  A+A I+++SLGP G+DKML    GDV +TNDGATIL+Q++V++   K++VEL++ QD E+GDGTT VV++A  LL++A++L+++ +HP  I  GY +A + AV++   I++   F  + +  + +V    T+++SK++        E+ V A  AV
Sbjct:   15 RTTGQGIRSQNVTAAVAIANIVKSSLGPVGLDKMLVDDVGDVIVTNDGATILKQLEVEHPAGKVLVELAQLQDEEVGDGTTSVVIVAAELLKRADELVKQKVHPTTIINGYRLACKEAVKY---ISENISFTSDSIGRQSVVNAAKTSMSSKIIGPDADFFGELVVDAAEAV 183          
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: THSG_SULSO (Thermosome subunit gamma OS=Sulfolobus solfataricus GN=thsC PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.316e-29
Identity = 80/193 (41.45%), Postives = 115/193 (59.59%), Query Frame = 2
Query:  152 LLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKM--VNRCKRRLAEIAVKAVLAVADLERKGCHLDL 724
            LLR+  ++S   G +    N++  K +  +L++SLGPKG+DKML     DVTITNDGATI++ M+V +  AKL++E +++ D E+GDGTT VVV+AG LLE+AE LL + IHP  I EGY  A   ++E L+ IA K      D + +     TTL+SK         ++  + + A LAV D       LD+
Sbjct:    4 LLREGTQRST--GNEVILNNIAVAKILLEMLKSSLGPKGLDKMLVEGQ-DVTITNDGATIVKNMEVQHPTAKLLIETAKTVDTEVGDGTTSVVVLAGLLLEKAEDLLNQKIHPTVIIEGYRKALNSSLELLKNIADK--ISPEDRKIVHDLVYTTLSSKFFSTEHTLEKIINLVIDASLAVLDKRDGSYDLDI 191          
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPG_TETPY (T-complex protein 1 subunit gamma OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.316e-29
Identity = 67/183 (36.61%), Postives = 114/183 (62.30%), Query Frame = 2
Query:  140 RPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAV 688
            +P ++L Q  ++    G  AQ AN+SA KAV+ I+ ++LGP+ M KML  P G + +TNDG  IL ++DV++  AK M+EL+R QD E+GDGTT V++MAG ++  A+  +ER IHP  I   Y  A   +++ +E +A   +  +N+ + + +   + + +K  +R  + + ++A+KAV  +
Sbjct:    7 QPIMVLNQNTKRES--GKKAQLANISASKAVSEIVTSTLGPRSMLKMLLDPMGGIVMTNDGNAILREIDVNHPAAKSMIELARVQDEEVGDGTTSVIIMAGEMMSAAKPFIERDIHPSIIVTAYYRALEESIKKIEELAVPID--VNNDDQVNKALSSCIGTKFTSRWGKLITDLALKAVRTI 185          
The following BLAST results are available for this feature:
BLAST of FC930069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 440
Match NameE-valueIdentityDescription
TCPA_DICDI8.697e-3038.76T-complex protein 1 subunit alpha OS=Dictyostelium... [more]
TCPA_YEAST1.136e-2940.11T-complex protein 1 subunit alpha OS=Saccharomyces... [more]
TCPH_PONAB1.483e-2937.97T-complex protein 1 subunit eta OS=Pongo abelii GN... [more]
TCPH_HUMAN1.483e-2937.97T-complex protein 1 subunit eta OS=Homo sapiens GN... [more]
TCPG_MOUSE1.937e-2936.04T-complex protein 1 subunit gamma OS=Mus musculus ... [more]
TCPH_MOUSE2.530e-2937.43T-complex protein 1 subunit eta OS=Mus musculus GN... [more]
TCPG_RAT3.305e-2936.04T-complex protein 1 subunit gamma OS=Rattus norveg... [more]
TCPA_CAEEL3.305e-2939.53T-complex protein 1 subunit alpha OS=Caenorhabditi... [more]
THSG_SULSO4.316e-2941.45Thermosome subunit gamma OS=Sulfolobus solfataricu... [more]
TCPG_TETPY4.316e-2936.61T-complex protein 1 subunit gamma OS=Tetrahymena p... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34003D12EF PostHarvC1 Citrus clementina cDNA clone C34003D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930069 ID=FC930069; Name=FC930069; organism=Citrus clementina; type=EST; length=732bp
CTGTTCATTGTTCACTAAGCGACAAAAGCACTGAAAGTTCTACACTCTTC
TTGTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTGAGAATCAA
GGATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGACCGTTCAT
ATTATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACTCGATGCTC
AGAAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCCTCCGAACC
TCCCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCCGACGGTGA
CGTCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGATGGATGTTG
ACAATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTCAGGACTAT
GAAATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGTTCACTTTT
AGAGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTATTCGGATTG
CAGAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATTTAGAACGT
ATAGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCTTTGGTTCA
AACTTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTGCAAGCGCA
GATTGGCTGAGATTGCTGTCAAAGCAGTTCTTGCTGTGGCAGACTTAGAG
AGGAAGGGATGTCATTTAGATTTGATTAAGNT
back to top