FC930069

Overview
NameFC930069
Unique NameFC930069
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPB_SCHPO (Probable T-complex protein 1 subunit beta OS=Schizosaccharomyces pombe GN=cct2 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.640e-28
Identity = 74/174 (42.53%), Postives = 113/174 (64.94%), Query Frame = 2
Query:  185 RGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQS-PDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA-------QKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVL 682
            RG +A+ ++     AV  +++++LGPKGMDK+LQS   GD+ +TNDGATIL+ + +DN  AK++V +S+ QD E+GDGTT V V A  LL QAE ++   IHP  I +GY +A++ A++ L   +        KF    +DLE + +   TTL+SK++++ K   A++AV AVL
Sbjct:   17 RGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATILKSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDALRASSIDNSSDPAKFR---SDLENIAR---TTLSSKILSQNKNHFAQLAVDAVL 184          
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPA_RAT (T-complex protein 1 subunit alpha OS=Rattus norvegicus GN=Tcp1 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.640e-28
Identity = 72/179 (40.22%), Postives = 111/179 (62.01%), Query Frame = 2
Query:  179 RLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLER--IAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKG 709
            R  G   +  NV A  ++A I+++SLGP G+DKML    GDVTITNDGATIL+ ++V++  AK++ EL+  QD E+GDGTT VV++A  LL+ A++L+++ IHP  +  GY +A + AV ++    I    E G    + L+    T+++SK++       A + V AVLAV   + +G
Sbjct:   11 RSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINENLIINTDELG---RDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAVKYTDIRG 186          
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPA_BOVIN (T-complex protein 1 subunit alpha OS=Bos taurus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.640e-28
Identity = 71/179 (39.66%), Postives = 111/179 (62.01%), Query Frame = 2
Query:  179 RLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLER--IAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKG 709
            R  G   +  NV A  ++A I+++SLGP G+DKML    GDVTITNDGATIL+ ++V++  AK++ EL+  QD E+GDGTT VV++A  LL+ A++L+++ IHP  +  GY +A + AV ++    I    E G    + L+    T+++SK++       A + V AVLA+   + +G
Sbjct:   11 RSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELG---RDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRG 186          
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPA2_MOUSE (T-complex protein 1 subunit alpha B OS=Mus musculus GN=Tcp1 PE=1 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 1.640e-28
Identity = 71/179 (39.66%), Postives = 110/179 (61.45%), Query Frame = 2
Query:  179 RLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLER--IAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKG 709
            R  G   +  NV A  ++A I+++S GP G+DKML    GDVTITNDGATIL+ ++V++  AK++ EL+  QD E+GDGTT VV++A  LL+ A++L+++ IHP  +  GY +A + AV ++    I    E G    + L+    T+++SK++       A + V AVLAV   + +G
Sbjct:   11 RSTGEAVRSQNVMAAASIANIVKSSFGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINENLIINTDELG---RDCLINAAKTSMSSKIIGINGDYFANMVVDAVLAVKYTDARG 186          
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPG_THAWE (T-complex protein 1 subunit gamma OS=Thalassiosira weissflogii PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.142e-28
Identity = 73/184 (39.67%), Postives = 112/184 (60.87%), Query Frame = 2
Query:  143 PFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLND-LEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVA 691
            P ++L  + ++S   G  AQ  N+ A +AVA I+R++LGP+ M KML  P G + ITNDG  IL ++DV +  AK M+ELSR+ D E+GDGTT V+++AG +L  AE  +   IHP  I  GY  A + A+   E  A   +   ++ ++ LVQ+C   + +K  +R    + ++A+KAVL V+
Sbjct:    8 PIMVLNSKTQRST--GRQAQLGNIQAARAVADIIRSTLGPRSMLKMLLDPMGGIVITNDGNCILREVDVSHPTAKSMIELSRAHDEEVGDGTTSVIILAGEMLINAEPFVRTNIHPTIIVRGYNYALQEALTICEEWALVVDVHDSERVKSLVQSC---IGAKFSSRWNDIMIDMALKAVLTVS 186          
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPA_PALPA (T-complex protein 1 subunit alpha OS=Paleosuchus palpebrosus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.798e-28
Identity = 71/179 (39.66%), Postives = 111/179 (62.01%), Query Frame = 2
Query:  179 RLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLER--IAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKG 709
            R  G   +  NV+A   +A I+++SLGP G+DKML    GDVTITNDGATIL+ ++V++  AK++ EL+  QD E+GDGTT VV++A  LL+ +++L+++ IHP  I  GY +A + AV ++    I    E G    + L+ +  T+++SK++       A + V A  AV   ++KG
Sbjct:   14 RSSGDTVRNQNVTAAATIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELAELQDKEVGDGTTSVVIIAAELLKNSDELVKQKIHPTSIIGGYRLACKEAVRYINENLIINTDELG---RDCLINSAKTSMSSKIIGIDGDFFASMVVDAASAVKYTDQKG 189          
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPA_MACFA (T-complex protein 1 subunit alpha OS=Macaca fascicularis GN=TCP1 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.654e-28
Identity = 71/179 (39.66%), Postives = 110/179 (61.45%), Query Frame = 2
Query:  179 RLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLER--IAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKG 709
            R  G   +  NV A  ++A I+++SLGP G+DKML    GDVTITNDGATIL+ ++V++  AK++ EL+  QD E+GDGTT VV++A  LL+ A++L ++ IHP  +  GY +A + AV ++    I    E G    + L+    T+++SK++       A + V AVLA+   + +G
Sbjct:   11 RSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELGKQKIHPTSVISGYRLACKEAVRYINENLIVNTDELG---RDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDTRG 186          
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPG_HUMAN (T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4)

HSP 1 Score: 124.405 bits (311), Expect = 6.233e-28
Identity = 69/197 (35.03%), Postives = 111/197 (56.35%), Query Frame = 2
Query:  140 RPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKGCHLDLIK 730
            RP ++L Q  ++    G   Q  N++A K +A I+RT LGPK M KML  P G + +TNDG  IL ++ V +  AK M+E+SR+QD E+GDGTT V+++AG +L  AE  LE+ +HP  +   Y  A    +  L++I+      ++D + ++    +++ +K ++R       IA+ AV  V   E     +D+ K
Sbjct:    5 RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKIS--IPVDISDSDMMLNIINSSITTKAISRWSSLACNIALDAVKMVQFEENGRKEIDIKK 197          
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPB_YEAST (T-complex protein 1 subunit beta OS=Saccharomyces cerevisiae GN=CCT2 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.233e-28
Identity = 77/187 (41.18%), Postives = 117/187 (62.57%), Query Frame = 2
Query:  197 AQKANVSA---GKAVARILRTSLGPKGMDKMLQSPDGDVT-ITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERG-IHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL-EPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAV---ADLERKGCHLDLIK 730
            A+ A +SA     AV  +++++LGPKGMDK+LQS   +   +TNDGATIL+ + +DN  AK++V +S+ QD E+GDGTT V V++  LL +AEKL+++  IHP  I EGY +AS  A++ L + A           E L+    TTL+SK++++ K   AE+A  A+L +    +LE    H+ +IK
Sbjct:   15 AENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAAKVLVNISKVQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDNSHDKTMFREDLIHIAKTTLSSKILSQDKDHFAELATNAILRLKGSTNLE----HIQIIK 197          
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPG_MACFA (T-complex protein 1 subunit gamma OS=Macaca fascicularis GN=CCT3 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.140e-28
Identity = 69/197 (35.03%), Postives = 110/197 (55.84%), Query Frame = 2
Query:  140 RPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKGCHLDLIK 730
            RP ++L Q  ++    G   Q  N++A K +A I+RT LGPK M KML  P G + +TNDG  IL ++ V +  AK M+E+SR+QD E+G GTT V+++AG +L  AE  LE+ +HP  +   Y  A    +  L++I+      +ND + ++    +++ +K ++R       IA+ AV  V   E     +D+ K
Sbjct:    5 RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGGGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKIS--IPVDINDSDMMLNIINSSITTKAISRWSSLACNIALDAVKTVQFEENGRKEIDIKK 197          
The following BLAST results are available for this feature:
BLAST of FC930069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 440
Match NameE-valueIdentityDescription
TCPB_SCHPO1.640e-2842.53Probable T-complex protein 1 subunit beta OS=Schiz... [more]
TCPA_RAT1.640e-2840.22T-complex protein 1 subunit alpha OS=Rattus norveg... [more]
TCPA_BOVIN1.640e-2839.66T-complex protein 1 subunit alpha OS=Bos taurus GN... [more]
TCPA2_MOUSE1.640e-2839.66T-complex protein 1 subunit alpha B OS=Mus musculu... [more]
TCPG_THAWE2.142e-2839.67T-complex protein 1 subunit gamma OS=Thalassiosira... [more]
TCPA_PALPA2.798e-2839.66T-complex protein 1 subunit alpha OS=Paleosuchus p... [more]
TCPA_MACFA3.654e-2839.66T-complex protein 1 subunit alpha OS=Macaca fascic... [more]
TCPG_HUMAN6.233e-2835.03T-complex protein 1 subunit gamma OS=Homo sapiens ... [more]
TCPB_YEAST6.233e-2841.18T-complex protein 1 subunit beta OS=Saccharomyces ... [more]
TCPG_MACFA8.140e-2835.03T-complex protein 1 subunit gamma OS=Macaca fascic... [more]

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Properties
Property NameValue
Genbank descriptionC34003D12EF PostHarvC1 Citrus clementina cDNA clone C34003D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930069 ID=FC930069; Name=FC930069; organism=Citrus clementina; type=EST; length=732bp
CTGTTCATTGTTCACTAAGCGACAAAAGCACTGAAAGTTCTACACTCTTC
TTGTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTGAGAATCAA
GGATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGACCGTTCAT
ATTATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACTCGATGCTC
AGAAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCCTCCGAACC
TCCCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCCGACGGTGA
CGTCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGATGGATGTTG
ACAATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTCAGGACTAT
GAAATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGTTCACTTTT
AGAGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTATTCGGATTG
CAGAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATTTAGAACGT
ATAGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCTTTGGTTCA
AACTTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTGCAAGCGCA
GATTGGCTGAGATTGCTGTCAAAGCAGTTCTTGCTGTGGCAGACTTAGAG
AGGAAGGGATGTCATTTAGATTTGATTAAGNT
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