FC930069
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPB_SCHPO (Probable T-complex protein 1 subunit beta OS=Schizosaccharomyces pombe GN=cct2 PE=2 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.640e-28 Identity = 74/174 (42.53%), Postives = 113/174 (64.94%), Query Frame = 2 Query: 185 RGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQS-PDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA-------QKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVL 682 RG +A+ ++ AV +++++LGPKGMDK+LQS GD+ +TNDGATIL+ + +DN AK++V +S+ QD E+GDGTT V V A LL QAE ++ IHP I +GY +A++ A++ L + KF +DLE + + TTL+SK++++ K A++AV AVL Sbjct: 17 RGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATILKSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDALRASSIDNSSDPAKFR---SDLENIAR---TTLSSKILSQNKNHFAQLAVDAVL 184
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPA_RAT (T-complex protein 1 subunit alpha OS=Rattus norvegicus GN=Tcp1 PE=1 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.640e-28 Identity = 72/179 (40.22%), Postives = 111/179 (62.01%), Query Frame = 2 Query: 179 RLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLER--IAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKG 709 R G + NV A ++A I+++SLGP G+DKML GDVTITNDGATIL+ ++V++ AK++ EL+ QD E+GDGTT VV++A LL+ A++L+++ IHP + GY +A + AV ++ I E G + L+ T+++SK++ A + V AVLAV + +G Sbjct: 11 RSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINENLIINTDELG---RDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAVKYTDIRG 186
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPA_BOVIN (T-complex protein 1 subunit alpha OS=Bos taurus GN=TCP1 PE=2 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.640e-28 Identity = 71/179 (39.66%), Postives = 111/179 (62.01%), Query Frame = 2 Query: 179 RLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLER--IAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKG 709 R G + NV A ++A I+++SLGP G+DKML GDVTITNDGATIL+ ++V++ AK++ EL+ QD E+GDGTT VV++A LL+ A++L+++ IHP + GY +A + AV ++ I E G + L+ T+++SK++ A + V AVLA+ + +G Sbjct: 11 RSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELG---RDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRG 186
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPA2_MOUSE (T-complex protein 1 subunit alpha B OS=Mus musculus GN=Tcp1 PE=1 SV=3) HSP 1 Score: 126.331 bits (316), Expect = 1.640e-28 Identity = 71/179 (39.66%), Postives = 110/179 (61.45%), Query Frame = 2 Query: 179 RLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLER--IAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKG 709 R G + NV A ++A I+++S GP G+DKML GDVTITNDGATIL+ ++V++ AK++ EL+ QD E+GDGTT VV++A LL+ A++L+++ IHP + GY +A + AV ++ I E G + L+ T+++SK++ A + V AVLAV + +G Sbjct: 11 RSTGEAVRSQNVMAAASIANIVKSSFGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINENLIINTDELG---RDCLINAAKTSMSSKIIGINGDYFANMVVDAVLAVKYTDARG 186
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPG_THAWE (T-complex protein 1 subunit gamma OS=Thalassiosira weissflogii PE=2 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 2.142e-28 Identity = 73/184 (39.67%), Postives = 112/184 (60.87%), Query Frame = 2 Query: 143 PFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLND-LEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVA 691 P ++L + ++S G AQ N+ A +AVA I+R++LGP+ M KML P G + ITNDG IL ++DV + AK M+ELSR+ D E+GDGTT V+++AG +L AE + IHP I GY A + A+ E A + ++ ++ LVQ+C + +K +R + ++A+KAVL V+ Sbjct: 8 PIMVLNSKTQRST--GRQAQLGNIQAARAVADIIRSTLGPRSMLKMLLDPMGGIVITNDGNCILREVDVSHPTAKSMIELSRAHDEEVGDGTTSVIILAGEMLINAEPFVRTNIHPTIIVRGYNYALQEALTICEEWALVVDVHDSERVKSLVQSC---IGAKFSSRWNDIMIDMALKAVLTVS 186
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPA_PALPA (T-complex protein 1 subunit alpha OS=Paleosuchus palpebrosus GN=TCP1 PE=2 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.798e-28 Identity = 71/179 (39.66%), Postives = 111/179 (62.01%), Query Frame = 2 Query: 179 RLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLER--IAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKG 709 R G + NV+A +A I+++SLGP G+DKML GDVTITNDGATIL+ ++V++ AK++ EL+ QD E+GDGTT VV++A LL+ +++L+++ IHP I GY +A + AV ++ I E G + L+ + T+++SK++ A + V A AV ++KG Sbjct: 14 RSSGDTVRNQNVTAAATIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELAELQDKEVGDGTTSVVIIAAELLKNSDELVKQKIHPTSIIGGYRLACKEAVRYINENLIINTDELG---RDCLINSAKTSMSSKIIGIDGDFFASMVVDAASAVKYTDQKG 189
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPA_MACFA (T-complex protein 1 subunit alpha OS=Macaca fascicularis GN=TCP1 PE=2 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 3.654e-28 Identity = 71/179 (39.66%), Postives = 110/179 (61.45%), Query Frame = 2 Query: 179 RLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLER--IAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKG 709 R G + NV A ++A I+++SLGP G+DKML GDVTITNDGATIL+ ++V++ AK++ EL+ QD E+GDGTT VV++A LL+ A++L ++ IHP + GY +A + AV ++ I E G + L+ T+++SK++ A + V AVLA+ + +G Sbjct: 11 RSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELGKQKIHPTSVISGYRLACKEAVRYINENLIVNTDELG---RDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDTRG 186
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPG_HUMAN (T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4) HSP 1 Score: 124.405 bits (311), Expect = 6.233e-28 Identity = 69/197 (35.03%), Postives = 111/197 (56.35%), Query Frame = 2 Query: 140 RPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKGCHLDLIK 730 RP ++L Q ++ G Q N++A K +A I+RT LGPK M KML P G + +TNDG IL ++ V + AK M+E+SR+QD E+GDGTT V+++AG +L AE LE+ +HP + Y A + L++I+ ++D + ++ +++ +K ++R IA+ AV V E +D+ K Sbjct: 5 RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKIS--IPVDISDSDMMLNIINSSITTKAISRWSSLACNIALDAVKMVQFEENGRKEIDIKK 197
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPB_YEAST (T-complex protein 1 subunit beta OS=Saccharomyces cerevisiae GN=CCT2 PE=1 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 6.233e-28 Identity = 77/187 (41.18%), Postives = 117/187 (62.57%), Query Frame = 2 Query: 197 AQKANVSA---GKAVARILRTSLGPKGMDKMLQSPDGDVT-ITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERG-IHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL-EPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAV---ADLERKGCHLDLIK 730 A+ A +SA AV +++++LGPKGMDK+LQS + +TNDGATIL+ + +DN AK++V +S+ QD E+GDGTT V V++ LL +AEKL+++ IHP I EGY +AS A++ L + A E L+ TTL+SK++++ K AE+A A+L + +LE H+ +IK Sbjct: 15 AENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAAKVLVNISKVQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDNSHDKTMFREDLIHIAKTTLSSKILSQDKDHFAELATNAILRLKGSTNLE----HIQIIK 197
BLAST of FC930069 vs. ExPASy Swiss-Prot
Match: TCPG_MACFA (T-complex protein 1 subunit gamma OS=Macaca fascicularis GN=CCT3 PE=2 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 8.140e-28 Identity = 69/197 (35.03%), Postives = 110/197 (55.84%), Query Frame = 2 Query: 140 RPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKGCHLDLIK 730 RP ++L Q ++ G Q N++A K +A I+RT LGPK M KML P G + +TNDG IL ++ V + AK M+E+SR+QD E+G GTT V+++AG +L AE LE+ +HP + Y A + L++I+ +ND + ++ +++ +K ++R IA+ AV V E +D+ K Sbjct: 5 RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGGGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKIS--IPVDINDSDMMLNIINSSITTKAISRWSSLACNIALDAVKTVQFEENGRKEIDIKK 197 The following BLAST results are available for this feature:
BLAST of FC930069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 440
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930069 ID=FC930069; Name=FC930069; organism=Citrus clementina; type=EST; length=732bpback to top |