FC930071

Overview
NameFC930071
Unique NameFC930071
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930071 vs. ExPASy Swiss-Prot
Match: LDOX_MAIZE (Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.407e-12
Identity = 48/191 (25.13%), Postives = 94/191 (49.21%), Query Frame = 1
Query:  160 ALAAEKTLNPSFVRFQDERPKV----------AYNEFSNEIPVISLAGIDDVGGK---RAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKF--DMSGGKKGGF--IVSSHLQGEVVKDWREIVTYFSYPKQSRDYSRWPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGL 681
            +L+    + P +VR  DER  +          A +  +  IPV+ ++   D   +   R E  + +  A  DWG+  +  HG+ A+L+  +    T FFALP ++K  +  D + G+  G+   ++++  G+  ++W + + +  +P    D++ WP  P  ++  T+++  +   +A  LL +LS  MGL
Sbjct:   18 SLSGLSAIPPEYVRPADERAGLGDAFDLARTHANDHTAPRIPVVDISPFLDSSSQQQQRDECVEAVRAAAADWGVMHIAGHGIPAELMDRLRAAGTAFFALPVQDKEAYANDPAAGRLQGYGSRLATNTCGQ--REWEDYLFHLVHPDGLADHALWPAYPPDYIAATRDFGRRTRDLASTLLAILS--MGL 204          
BLAST of FC930071 vs. ExPASy Swiss-Prot
Match: ACCO_PERAE (1-aminocyclopropane-1-carboxylate oxidase OS=Persea americana GN=ACO PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.407e-12
Identity = 43/148 (29.05%), Postives = 82/148 (55.41%), Query Frame = 1
Query:  244 NEIPVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSYPKQSRDYSRWPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGLEK 687
            +  PVI++  ++  G +RA   K I +ACE+WG F++V+H +  +L+ ++ RL  E +    E++ K  M+   +G  + ++ +      DW    T+F       + S  PD  +   +V KE++++L  +A ++L++L E +GLEK
Sbjct:    2 DSFPVINMEKLE--GQERAATMKLINDACENWGFFELVNHSIPVELMDEVERLTKEHYKKCMEQRFKELMASKVEGAVVDANDM------DWES--TFFIRHLPVSNLSEIPDLTDEHRKVMKEFAEKLEKLAEQVLDLLCENLGLEK 139          
BLAST of FC930071 vs. ExPASy Swiss-Prot
Match: ACCO2_MALDO (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Malus domestica GN=ACO2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.407e-12
Identity = 46/145 (31.72%), Postives = 80/145 (55.17%), Query Frame = 1
Query:  253 PVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSYPKQSRDYSRWPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGLEK 687
            PV+ +  I+  G +RA   +KI +ACE+WG F++V+HG+  +L+  + ++  + +    E++ K  ++   KG   V S +      DW    T+F     S + S  PD  E + +  KE++ +L  +A KLL++L E +GLEK
Sbjct:    5 PVVDMDLIN--GEERAATLEKINDACENWGFFELVNHGISTELLDTVEKMNKDHYKKTMEQRFKEMVAA--KGLEAVQSEIH---YLDWES--TFFLRHLPSSNISEIPDLEEDYRKTMKEFAVELEKLAEKLLDLLCENLGLEK 140          
BLAST of FC930071 vs. ExPASy Swiss-Prot
Match: ACCH2_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.368e-12
Identity = 55/167 (32.93%), Postives = 79/167 (47.31%), Query Frame = 1
Query:  250 IPVISLAGIDDVGG-KRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPE-EKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSYPKQSRDYSRWPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGLEKEL*LSMCGLD--QKMCHYY 738
            IP I L G D     K     + I EA   WG FQV++HGV  +L+  M     +F   PPE  K  +    G+K  ++ +  L      +WR+  T++ Y   + D     D PE   +V  EYS Q+M +   L E+LSEA+GL       M  L   + +CHY+
Sbjct:   64 IPTIDLGGRDFQDAIKHKNAIEGIKEAAAKWGFFQVINHGVSLELLEKMKDGVRDFHEQPPEVRKDLYSRDFGRKFIYLSNFDLYTAAAANWRD--TFYCY--MAPDPPEPQDLPEICRDVMMEYSKQVMILGEFLFELLSEALGLNPNHLKDMECLKGLRMLCHYF 226          
BLAST of FC930071 vs. ExPASy Swiss-Prot
Match: ACCO1_CUCME (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Cucumis melo GN=ACO1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.153e-11
Identity = 45/147 (30.61%), Postives = 82/147 (55.78%), Query Frame = 1
Query:  253 PVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFD-MSGGKKGGFIVSSHLQGEV-VKDWREIVTYFSYPKQSRDYSRWPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGLEK 687
            P+I+L  I+D G  RA+I ++I +AC++WG F++V+HG+  + +  + ++  + +    EE+ K   +S G +         Q EV   DW    T+F       + S+  D  E + ++ KE++ +L  +A +LL++L E +GLEK
Sbjct:    5 PIINLENINDDG--RAKILEQIEDACQNWGFFELVNHGIPHEFLDMVEKMTRDHYKKCMEERFKETVLSKGLEAA-------QAEVNDMDWES--TFFLRHLPESNISQMSDLDEEYKKIMKEFAKKLENLAEELLDLLCENLGLEK 140          
BLAST of FC930071 vs. ExPASy Swiss-Prot
Match: GAO1A_WHEAT (Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.424e-11
Identity = 43/150 (28.67%), Postives = 77/150 (51.33%), Query Frame = 1
Query:  250 IPVISLAG-IDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSYPKQSR---DY--SRWPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGL 681
            +P+I++ G +       AE+ + + EACE  G FQVV+HG+DA+L++D  R    FF +P  EK +     G+  G+  S   +      W+E +++ S P       DY  +   +      EV   Y  ++  ++ +++EVL E++G+
Sbjct:   39 VPLINIGGMLSGDAAAAAEVTRLVGEACERHGFFQVVNHGIDAELLADAHRCVDNFFTMPLPEKQRALRRPGESCGYASSFTGRFASKLPWKETLSFRSCPSDPALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGV 188          
BLAST of FC930071 vs. ExPASy Swiss-Prot
Match: ACCO_ACTDE (1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.424e-11
Identity = 46/145 (31.72%), Postives = 79/145 (54.48%), Query Frame = 1
Query:  253 PVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSYPKQSRDYSRWPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGLEK 687
            PVI +  ++  G +RA   +KI +ACE+WG F++V+HG+  +L+  + RL  E +    E++ K  ++   KG   V S +      DW    T+F       + S  PD  +   +  KE++++L  +A +LL++L E +GLEK
Sbjct:    5 PVIDMEKLN--GEERAPTMEKIKDACENWGFFELVNHGISHELMDTVERLTKEHYNKCMEQRFKEMVA--TKGLEAVQSEIND---LDWES--TFFLRHLPVSNISEIPDLEQDHRKAMKEFAEKLEKLAEQLLDLLCENVGLEK 140          
BLAST of FC930071 vs. ExPASy Swiss-Prot
Match: ACCO_PRUMU (1-aminocyclopropane-1-carboxylate oxidase OS=Prunus mume GN=ACO1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.252e-11
Identity = 45/145 (31.03%), Postives = 76/145 (52.41%), Query Frame = 1
Query:  253 PVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSYPKQSRDYSRWPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGLEK 687
            P+I+L G++  G K     +KI +ACE+WG F++V HG+  + +  + RL  E +    E++ K  ++   KG   V + +      DW         PK   + S  PD  + +  V KE++ +L  +A +LL++L E +GLEK
Sbjct:    5 PIINLEGLNGEGRKAT--MEKIKDACENWGFFELVSHGIPTEFLDTVERLTKEHYRQCLEQRFKELVA--SKGLEAVKTEVND---MDWESTFYLRHLPKS--NISEVPDLEDQYRNVMKEFALKLEKLAEQLLDLLCENLGLEK 140          
BLAST of FC930071 vs. ExPASy Swiss-Prot
Match: ACCO3_CUCME (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Cucumis melo GN=ACO3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.252e-11
Identity = 43/147 (29.25%), Postives = 80/147 (54.42%), Query Frame = 1
Query:  247 EIPVISLAGIDDVGGKRAEICKKIVEACEDWGIFQVVDHGVDAKLISDMTRLATEFFALPPEEKLKFDMSGGKKGGFIVSSHLQGEVVKDWREIVTYFSYPKQSRDYSRWPDKPEGWMEVTKEYSDQLMGVACKLLEVLSEAMGLEK 687
            + PVI++  ++  G  R  +  +I +ACE+WG F++V+HG+  +L+  + +L  E +    E++ K  ++   KG   V + +      DW    T+F       + S   D  E + +V KE++D+L  +A ++L++L E +GLEK
Sbjct:    4 DFPVINMNNLN--GESRVSVLNQINDACENWGFFELVNHGISHELMDKVEKLTKEHYRKCMEQRFKEMVA--SKGLDSVETEIND---TDWES--TFFLRHLPVSNMSEIGDLDEEYKKVMKEFADELEKLAEEVLDLLCENLGLEK 141          
The following BLAST results are available for this feature:
BLAST of FC930071 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
LDOX_MAIZE6.407e-1225.13Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 P... [more]
ACCO_PERAE6.407e-1229.051-aminocyclopropane-1-carboxylate oxidase OS=Perse... [more]
ACCO2_MALDO6.407e-1231.721-aminocyclopropane-1-carboxylate oxidase 2 OS=Mal... [more]
ACCH2_ARATH8.368e-1232.931-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCO1_CUCME4.153e-1130.611-aminocyclopropane-1-carboxylate oxidase 1 OS=Cuc... [more]
GAO1A_WHEAT5.424e-1128.67Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN... [more]
ACCO_ACTDE5.424e-1131.721-aminocyclopropane-1-carboxylate oxidase OS=Actin... [more]
ACCO_PRUMU9.252e-1131.031-aminocyclopropane-1-carboxylate oxidase OS=Prunu... [more]
ACCO3_CUCME9.252e-1129.251-aminocyclopropane-1-carboxylate oxidase 3 OS=Cuc... [more]

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Properties
Property NameValue
Genbank descriptionC34003E02EF PostHarvC1 Citrus clementina cDNA clone C34003E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930071 ID=FC930071; Name=FC930071; organism=Citrus clementina; type=EST; length=738bp
GAAACATGCACATTAACCGCCCACAACACAAGCGGCAGTTGCGCATCACC
CTTGGACTCACTCTTTTGCTTTTAAACAGATACATATACATTTGCTCTAA
TATATTATTATTATTTGTGCTTCGTTGATCATCAATTAATGGCTCCTTCA
ACCCTCACCGCCCTTGCTGCGGAGAAAACCCTCAACCCAAGCTTTGTCCG
CTTTCAAGATGAGCGTCCCAAGGTGGCTTATAATGAATTCAGCAATGAAA
TTCCTGTGATTTCACTTGCTGGGATCGATGACGTCGGTGGCAAAAGGGCT
GAGATTTGCAAGAAAATTGTTGAGGCGTGTGAGGACTGGGGAATCTTTCA
AGTTGTTGATCATGGTGTTGATGCTAAGCTTATATCCGATATGACTCGTC
TTGCTACAGAATTTTTCGCCCTGCCCCCTGAGGAGAAGCTCAAGTTTGAT
ATGTCCGGTGGGAAGAAGGGTGGCTTCATTGTCTCCAGCCACCTTCAGGG
TGAAGTAGTAAAAGATTGGCGTGAAATAGTGACGTATTTTTCATACCCAA
AGCAAAGCCGAGACTACTCTCGTTGGCCGGACAAGCCAGAAGGGTGGATG
GAAGTAACAAAAGAATACAGTGACCAATTAATGGGAGTGGCGTGCAAGCT
TCTAGAAGTTTTATCAGAGGCAATGGGATTGGAGAAGGAGCTTTGACTAA
GCATGTGTGGACTGGACCAAAAGATGTGTCATTACTAT
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