FC930072

Overview
NameFC930072
Unique NameFC930072
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1870 contig Ccv1_Contig1870:204..873. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACDA_BACSU (Acyl-CoA dehydrogenase OS=Bacillus subtilis GN=acdA PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.849e-35
Identity = 51/135 (37.78%), Postives = 78/135 (57.78%), Query Frame = 3
Query:   30 DVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 434
            D  L++ M N  L GI  P++          + IA+EE+S+   S G++  AH +LC   L   G+  QK +YL +L  GE +GA A++E  +GSD   MK  A+R+   Y++NG+K++ TNG VA   +V+A T
Sbjct:   38 DRELFREMANLGLTGIPWPEDYGGIGSDYLAYVIAVEELSKVCASTGVTLSAHISLCSWPLFAFGTEEQKTEYLTQLALGEKIGAFALTEAGSGSDAGSMKTTAERIGDDYVLNGSKVFITNGGVADIYIVFAVT 172          

HSP 2 Score: 69.3218 bits (168), Expect = 6.849e-35
Identity = 35/70 (50.00%), Postives = 46/70 (65.71%), Query Frame = 2
Query:  452 KGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 661
            KG+TAFI+EK   GF T +K  KLG+R S T E++FE+C VP    LG+EG+G  + M  LD  R  +AA
Sbjct:  179 KGVTAFIVEKDFEGFFTGKKEKKLGIRSSPTTEIMFEDCVVPASKRLGEEGEGFKIAMKTLDGGRNGIAA 248          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACDS_MEGEL (Acyl-CoA dehydrogenase, short-chain specific OS=Megasphaera elsdenii PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.468e-31
Identity = 39/105 (37.14%), Postives = 66/105 (62.86%), Query Frame = 3
Query:  123 HCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG-YIINGNKMWCTNGPVAQTLVVYAKT 434
            + +A+EE+++    V ++  A  +LC N + + G+ AQK+K+L  L+ G  +GA  ++EPNAG+D  G +  A + D G Y +NG+K++ TNG  A   +V+A T
Sbjct:   72 YILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMT 176          

HSP 2 Score: 75.485 bits (184), Expect = 2.468e-31
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 2
Query:  446 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 661
            G+ GITAFI+E G PGF+  +K DK+G+  S T ELVF++  VP EN+LG+EGKG  + M  LD  R+ +AA
Sbjct:  181 GNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAMMTLDGGRIGVAA 252          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACADS_PONAB (Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Pongo abelii GN=ACADS PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.444e-31
Identity = 46/137 (33.58%), Postives = 66/137 (48.18%), Query Frame = 3
Query:   45 KLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTTLKLAQK 455
            K MG   L  +  P+E          + IAMEEISR   S G+    +++L +  +++ GS  QK K++    SG+ +G  A+SEP  GSD       A      +++NG K W TN   A   VV+A T   L  K
Sbjct:   72 KKMGGLGLLAMDVPEELGGAGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQKWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQNK 208          

HSP 2 Score: 70.4774 bits (171), Expect = 5.444e-31
Identity = 30/71 (42.25%), Postives = 49/71 (69.01%), Query Frame = 2
Query:  449 SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 661
            +KGI+AF++    PG +  +K DKLG+RGS T  L+FE+C +P +++LG+ G G  + M  LD+ R+ +A+
Sbjct:  207 NKGISAFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLDMGRIGIAS 277          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACADS_HUMAN (Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADS PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.654e-30
Identity = 45/137 (32.85%), Postives = 65/137 (47.45%), Query Frame = 3
Query:   45 KLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTTLKLAQK 455
            K MG   L  +  P+E          + IAMEEISR   S G+    +++L +  +++ GS  QK  ++    SG+ +G  A+SEP  GSD       A      +++NG K W TN   A   VV+A T   L  K
Sbjct:   72 KKMGGLGLLAMDVPEELGGAGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQNK 208          

HSP 2 Score: 70.4774 bits (171), Expect = 2.654e-30
Identity = 30/71 (42.25%), Postives = 49/71 (69.01%), Query Frame = 2
Query:  449 SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 661
            +KGI+AF++    PG +  +K DKLG+RGS T  L+FE+C +P +++LG+ G G  + M  LD+ R+ +A+
Sbjct:  207 NKGISAFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLDMGRIGIAS 277          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: FADE_BACSU (Probable acyl-CoA dehydrogenase OS=Bacillus subtilis GN=fadE PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.436e-30
Identity = 56/135 (41.48%), Postives = 69/135 (51.11%), Query Frame = 3
Query:   33 VNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAK 431
            V L K  G   L G   P+E            +  E+ SRA GS  LSYGAH  +    +V  GS  QK KYLP L SGE + A A++EP +GSD +G K  A   + G  Y++ G K W TN   A   VVYAK
Sbjct:   65 VRLLKKAGELGLLGADVPEEYGGLGLDKISSALITEKFSRA-GSFSLSYGAHVGIGSLPIVFFGSEEQKKKYLPGLASGEKIAAYALTEPGSGSDALGAKTTAVLNEAGTHYVLTGEKQWITNSAFADVFVVYAK 198          

HSP 2 Score: 59.3066 bits (142), Expect = 3.436e-30
Identity = 30/75 (40.00%), Postives = 44/75 (58.67%), Query Frame = 2
Query:  440 KAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAG 664
            K      +AFI+EK  PG ST  +  K+G++GS T  L+ +   VP EN+LG+ GKG  +  + L++ R  LA G
Sbjct:  198 KVDGDKFSAFIVEKEFPGVSTGPEEKKMGIKGSSTRTLILDQAEVPKENLLGEIGKGHVIAFNILNIGRYKLAVG 272          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACADS_MOUSE (Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acads PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.858e-30
Identity = 42/130 (32.31%), Postives = 65/130 (50.00%), Query Frame = 3
Query:   45 KLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 434
            K MG   L  +  P+E          + IA+EEISRA  S G+    +++L +  +++ GS  QK +++    +G+ +G  A+SEP  GSD       A      +++NG K W TN   A   VV+A T
Sbjct:   72 KKMGELGLLAMDVPEELSGAGLGYLAYSIALEEISRACASTGVIMSVNNSLYLGPILKFGSAQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWEASATVVFAST 201          

HSP 2 Score: 70.4774 bits (171), Expect = 5.858e-30
Identity = 31/71 (43.66%), Postives = 48/71 (67.61%), Query Frame = 2
Query:  449 SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 661
            +KGI+AF++    PG +  +K DKLG+R S T  L+FE+C +P EN+LG+ G G  + M  LD+ R+ +A+
Sbjct:  207 NKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIAS 277          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACADS_RAT (Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Acads PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.684e-29
Identity = 41/130 (31.54%), Postives = 64/130 (49.23%), Query Frame = 3
Query:   45 KLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 434
            K MG   L  +  P+E          + IA+EEISR   S G+    +++L +  +++ GS  QK +++    +G+ +G  A+SEP  GSD       A      +++NG K W TN   A   VV+A T
Sbjct:   72 KKMGELGLLAMDVPEELSGAGLDYLAYSIALEEISRGCASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWEASATVVFAST 201          

HSP 2 Score: 70.4774 bits (171), Expect = 1.684e-29
Identity = 31/71 (43.66%), Postives = 48/71 (67.61%), Query Frame = 2
Query:  449 SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 661
            +KGI+AF++    PG +  +K DKLG+R S T  L+FE+C +P EN+LG+ G G  + M  LD+ R+ +A+
Sbjct:  207 NKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIAS 277          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACADS_PIG (Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Sus scrofa GN=ACADS PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.298e-29
Identity = 45/137 (32.85%), Postives = 65/137 (47.45%), Query Frame = 3
Query:   45 KLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTTLKLAQK 455
            K MG   L  +  P+E          + IAMEEISR   S G+    ++ L +  +++ GS  QK +++    SG+ VG  A+SEP  GSD       A      ++++G K W TN   A   VV+A T   L  K
Sbjct:   72 KKMGELGLMAMDVPEELSGAGLDYLAYTIAMEEISRGCASTGVIMSVNNFLYLGPILKFGSKEQKQQWITPFTSGDKVGCFALSEPGNGSDAGAAATTAQADHDSWVLSGTKAWITNAWEASAAVVFASTDRSLQNK 208          

HSP 2 Score: 67.3958 bits (163), Expect = 6.298e-29
Identity = 30/71 (42.25%), Postives = 47/71 (66.20%), Query Frame = 2
Query:  449 SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 661
            +KGI+AF++     G +  +K DKLG+R S T  L+FE+C +P EN+LG+ G G  + M  LD+ R+ +A+
Sbjct:  207 NKGISAFLVPMPTAGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMKTLDMGRIGIAS 277          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACDC_BACSU (Probable acyl-CoA dehydrogenase yngJ OS=Bacillus subtilis GN=yngJ PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.069e-28
Identity = 52/131 (39.69%), Postives = 72/131 (54.96%), Query Frame = 3
Query:   42 WKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 434
            +K MG   L GI  P+E          + +A+EE+ +A GS GLSY A  +L  + L   G+  QK  +L  L SG  +G+  ++EPNAGSD  G + KA      Y+ING K W TN   A+T++V A T
Sbjct:   42 FKKMGELGLMGIPFPEEYGGSGGDTISYALAVEEVGKACGSTGLSYAAAVSLGASPLYYFGTEEQKQTHLTPLASGTALGSFGLTEPNAGSDAGGTQTKAISNGDEYVINGEKCWITNASYARTVIVTAVT 172          

HSP 2 Score: 52.373 bits (124), Expect = 1.069e-28
Identity = 28/74 (37.84%), Postives = 41/74 (55.41%), Query Frame = 2
Query:  440 KAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 661
            K G   I+A I+    PG +     DK+G+RGS+T E++ E+  VP  N+LG   KG    +  LD  R+ +AA
Sbjct:  176 KDGKNIISALIVPTDTPGLTITSPYDKMGVRGSNTAEILLEDVRVPAANLLGDPTKGFKQFLYTLDGGRISIAA 249          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACAD9_HUMAN (Acyl-CoA dehydrogenase family member 9, mitochondrial OS=Homo sapiens GN=ACAD9 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.381e-28
Identity = 48/139 (34.53%), Postives = 75/139 (53.96%), Query Frame = 3
Query:   24 LQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDG--GYIINGNKMWCTNGPVAQTLVVYAKT 434
            + D  L KL  +  L G+  P+E          +   + EI    GS+ ++  AH  + +  ++  G+  QK KYLPKL SGEH+ A  ++EP +GSD   ++ +A   +    YI+NG+K+W TNG +A    V+AKT
Sbjct:   93 IPDETLEKLK-SLGLFGLQVPEEYGGLGFSNTMYS-RLGEIISMDGSITVTLAAHQAIGLKGIILAGTEEQKAKYLPKLASGEHIAAFCLTEPASGSDAASIRSRATLSEDKKHYILNGSKVWITNGGLANIFTVFAKT 229          

HSP 2 Score: 63.1586 bits (152), Expect = 1.381e-28
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 2
Query:  458 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 661
            ITAFI+E+   G +  +  DKLG+RGS+TCE+ FEN  +P EN+LG+ G G  V M+ L+  R  + +
Sbjct:  242 ITAFIVERDFGGVTNGKPEDKLGIRGSNTCEVHFENTKIPVENILGEVGDGFKVAMNILNSGRFSMGS 309          
The following BLAST results are available for this feature:
BLAST of FC930072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
ACDA_BACSU6.849e-3537.78Acyl-CoA dehydrogenase OS=Bacillus subtilis GN=acd... [more]
ACDS_MEGEL2.468e-3137.14Acyl-CoA dehydrogenase, short-chain specific OS=Me... [more]
ACADS_PONAB5.444e-3133.58Short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
ACADS_HUMAN2.654e-3032.85Short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
FADE_BACSU3.436e-3041.48Probable acyl-CoA dehydrogenase OS=Bacillus subtil... [more]
ACADS_MOUSE5.858e-3032.31Short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
ACADS_RAT1.684e-2931.54Short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
ACADS_PIG6.298e-2932.85Short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
ACDC_BACSU1.069e-2839.69Probable acyl-CoA dehydrogenase yngJ OS=Bacillus s... [more]
ACAD9_HUMAN1.381e-2834.53Acyl-CoA dehydrogenase family member 9, mitochondr... [more]

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Properties
Property NameValue
Genbank descriptionC34003E03EF PostHarvC1 Citrus clementina cDNA clone C34003E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930072 ID=FC930072; Name=FC930072; organism=Citrus clementina; type=EST; length=668bp
TGTGATTTTGGTTGTCCCTCTTGCTACAGGATGTTAATTTATGGAAACTC
ATGGGAAATTTCAATCTCCATGGAATAACAGCTCCACAGGAATACGGAGG
GCTTGGACTTGGTTACTTGTATCATTGCATAGCAATGGAAGAAATTAGCC
GTGCGTCGGGGTCTGTTGGTCTCTCTTACGGTGCCCATTCTAATTTGTGC
ATCAATCAATTGGTGAGACATGGAAGCCCTGCTCAGAAAGACAAGTACTT
GCCCAAGCTCATTAGCGGAGAACATGTAGGTGCTCTTGCCATGAGTGAAC
CCAACGCTGGCTCTGATGTTGTTGGCATGAAATGCAAAGCTGATCGCGTA
GATGGGGGTTATATTATAAATGGGAACAAGATGTGGTGCACCAATGGTCC
AGTTGCTCAGACGTTGGTTGTTTACGCAAAAACAACATTAAAGCTGGCTC
AAAAGGAATCACAGCATTTATCATAGAGAAAGGAATGCCCGGATTCAGCA
CTGCCCAGAAGTTAGACAAGCTCGGGATGAGAGGAAGTGATACATGTGAG
CTTGTATTTGAGAATTGCTTTGTTCCAAATGAGAATGTTCTTGGGCAGGA
AGGAAAAGGAGTTTATGTTATGATGTCAGGGCTAGATTTGGAGAGGCTTG
TTTTGGCAGCTGGGCCCC
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