FC930072

Overview
NameFC930072
Unique NameFC930072
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1870 contig Ccv1_Contig1870:204..873. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACADL_MOUSE (Long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acadl PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 2.354e-28
Identity = 39/132 (29.55%), Postives = 73/132 (55.30%), Query Frame = 3
Query:   39 LWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 434
            +W+  G   L GI   ++            +  EE    S   G  +  HS++ +  +  +G+  Q +K++P++ +G+ +GA+AM+EP AGSD+ G++  A R    +I+NG+K++ TNG ++  ++V A T
Sbjct:   89 VWEKAGKQGLLGINIAEKHGGIGGDLLSTAVTWEE-QAYSNCTGPGFSLHSDIVMPYIANYGTKEQIEKFIPQMTAGKCIGAIAMTEPGAGSDLQGVRTNAKRSGSDWILNGSKVFITNGWLSDLVIVVAVT 219          

HSP 2 Score: 68.9366 bits (167), Expect = 2.354e-28
Identity = 32/73 (43.84%), Postives = 48/73 (65.75%), Query Frame = 2
Query:  440 KAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLA 658
            ++ + GI+ F++E GM GF   +KL K+GM+  DT EL FE+  +P   +LG+E KG Y +M  L  ERL++A
Sbjct:  224 RSPAHGISLFLVENGMKGFIKGRKLHKMGMKAQDTAELFFEDVRLPANALLGEENKGFYYLMQELPQERLLIA 296          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACADL_RAT (Long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Acadl PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.065e-28
Identity = 39/132 (29.55%), Postives = 73/132 (55.30%), Query Frame = 3
Query:   39 LWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 434
            LW+  G   L GI   ++            +  EE    S   G  +  HS++ +  +  +G+  Q ++++P++ +G+ +GA+AM+EP AGSD+ G++  A R    +I+NG+K++ TNG ++  ++V A T
Sbjct:   89 LWEKAGKQGLLGINIAEKHGGIGGDLLSTAVTWEE-QAYSNCTGPGFSLHSDIVMPYIANYGTKEQIEQFIPQMTAGKCIGAIAMTEPGAGSDLQGVRTNAKRSGSDWILNGSKVFITNGWLSDLVIVVAVT 219          

HSP 2 Score: 68.9366 bits (167), Expect = 3.065e-28
Identity = 32/73 (43.84%), Postives = 48/73 (65.75%), Query Frame = 2
Query:  440 KAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLA 658
            ++ + GI+ F++E GM GF   +KL K+GM+  DT EL FE+  +P   +LG+E KG Y +M  L  ERL++A
Sbjct:  224 RSPAHGISLFLVENGMKGFIKGKKLHKMGMKAQDTAELFFEDVRLPASALLGEENKGFYYLMQELPQERLLIA 296          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACADL_HUMAN (Long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADL PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.146e-27
Identity = 39/132 (29.55%), Postives = 73/132 (55.30%), Query Frame = 3
Query:   39 LWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 434
            +W+  G   L G+   +             I  EE + ++ S G  +  HS + ++ +  HGS  Q   ++P++ +G+ +GA+AM+EP AGSD+ G+K  A +    +I+NG+K++ +NG ++  ++V A T
Sbjct:   89 VWEKAGKQGLLGVNIAEHLGGIGGDLYSAAIVWEEQAYSNCS-GPGFSIHSGIVMSYITNHGSEEQIKHFIPQMTAGKCIGAIAMTEPGAGSDLQGIKTNAKKDGSDWILNGSKVFISNGSLSDVVIVVAVT 219          

HSP 2 Score: 67.0106 bits (162), Expect = 1.146e-27
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 2
Query:  455 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLA 658
            GI+ F++E GM GF   +KL K+G++  DT EL FE+  +P   +LG+E KG Y +M  L  ERL++A
Sbjct:  229 GISLFLVENGMKGFIKGRKLHKMGLKAQDTAELFFEDIRLPASALLGEENKGFYYIMKELPQERLLIA 296          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACADS_BOVIN (Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=ACADS PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.493e-27
Identity = 46/138 (33.33%), Postives = 70/138 (50.72%), Query Frame = 3
Query:   45 KLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDG-GYIINGNKMWCTNGPVAQTLVVYAKTTLKLAQK 455
            K MG   L  +  P+E          + IAMEEISR   S G+    +++L +  +++ G+  QK +++    SG+ +G  A+SEP  GSD  G      R DG  ++++G K W TN   A  +VV+A T   L  K
Sbjct:   72 KKMGELGLMAMNVPEELSGAGLDYLAYSIAMEEISRGCASTGVIMSVNNSLYLGPILKFGTKEQKQQWVAPFTSGDKIGCFALSEPGNGSD-AGAAATTARADGDSWVLSGTKAWITNAWEASAVVVFASTDRSLHNK 208          

HSP 2 Score: 61.2326 bits (147), Expect = 1.493e-27
Identity = 28/71 (39.44%), Postives = 46/71 (64.79%), Query Frame = 2
Query:  449 SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 661
            +KGI+AF++    PG +  +K DKLG+R S T  L+FE+  +P +++LG+ G G  + M  LD  R+ +A+
Sbjct:  207 NKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDRRIPKDSLLGEPGLGFKIAMQTLDTGRIGIAS 277          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACAD9_MOUSE (Acyl-CoA dehydrogenase family member 9, mitochondrial OS=Mus musculus GN=Acad9 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.272e-27
Identity = 44/136 (32.35%), Postives = 73/136 (53.68%), Query Frame = 3
Query:   33 VNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKT 434
            V+  + + +  L GI  P+E          +   + EI     S+ ++  AH  + +  ++  G+  QK KYLPKL SGEH+ A  ++EP +GSD   ++ +A   +    +I+NG+K+W TNG +A    V+AKT
Sbjct:   99 VDTLEKLKSLGLFGIQVPEEYGGLGLSNTMYA-RLGEIISLDASITVTLAAHQAIGLKGIILVGNDEQKAKYLPKLSSGEHIAAFCLTEPASGSDAASIQTRATLSEDKKYFILNGSKVWITNGGLANIFTVFAKT 233          

HSP 2 Score: 62.7734 bits (151), Expect = 3.272e-27
Identity = 32/68 (47.06%), Postives = 45/68 (66.18%), Query Frame = 2
Query:  458 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 661
            +TAFI+E+   G +  +  DKLG+RGS+TCE+ FEN  VP ENVLG+ G G  V M+ L+  R  + +
Sbjct:  246 MTAFIVERDFGGITNGKPEDKLGIRGSNTCEVHFENTRVPVENVLGEVGGGFKVAMNILNSGRFSMGS 313          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACADV_HUMAN (Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADVL PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.590e-26
Identity = 45/142 (31.69%), Postives = 74/142 (52.11%), Query Frame = 3
Query:   15 SLLLQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKT 434
            +L + +   W+ +      G+  P E          +   +E +      VG++ GAH ++    ++  G+ AQK+KYLPKL SGE V A  ++EP++GSD   ++  A     G  Y +NG+K+W +NG +A    V+AKT
Sbjct:  124 ALEMVEETTWQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKT 265          

HSP 2 Score: 55.0694 bits (131), Expect = 1.590e-26
Identity = 28/68 (41.18%), Postives = 42/68 (61.76%), Query Frame = 2
Query:  458 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 661
            ITAF++E+G  G +      K+G++ S+T E+ F+   VP+ENVLG+ G G  V M  L+  R  +AA
Sbjct:  279 ITAFVVERGFGGITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAA 346          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACADL_MACFA (Long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis GN=ACADL PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.786e-26
Identity = 36/132 (27.27%), Postives = 72/132 (54.55%), Query Frame = 3
Query:   39 LWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 434
            +W+  G   L G+   +             +  EE + ++ S G  +  HS + ++ +  +GS  Q   ++P++ +G+ +GA+AM+E  AGSD+ G+K  A +    +I+NG+K++ +NG ++  ++V A T
Sbjct:   89 VWEKAGKQGLLGVNIAEHLGGIGGDLYYAAVVWEEQAYSNCS-GPGFSVHSGIVMSYITNYGSEEQIKHFIPQMTAGKCIGAIAMTELGAGSDLQGIKTNAKKDGSDWILNGSKVFISNGWLSDVVIVVAVT 219          

HSP 2 Score: 68.1662 bits (165), Expect = 7.786e-26
Identity = 31/70 (44.29%), Postives = 47/70 (67.14%), Query Frame = 2
Query:  449 SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLA 658
            ++GI+ F++E GM GF   +KL K+G++  DT EL FE+  +P   +LG+E KG Y +M  L  ERL++A
Sbjct:  227 ARGISLFLVENGMKGFIKGRKLHKMGLKAQDTAELFFEDVRLPASALLGEENKGFYYIMKELPQERLLIA 296          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACADV_MACFA (Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis GN=ACADVL PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.310e-25
Identity = 42/123 (34.15%), Postives = 68/123 (55.28%), Query Frame = 3
Query:   72 GITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKT 434
            G+  P E          +   +E +     +VG++ GAH ++    ++  G+ AQK+KYLPKL SGE + A  ++EP++GSD   ++  A     G  Y +NG+K+W +NG +A    V+AKT
Sbjct:  143 GLQVPSELGGVGLCNTQYARLVEIVGMHDLAVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETLAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKT 265          

HSP 2 Score: 55.4546 bits (132), Expect = 1.310e-25
Identity = 28/68 (41.18%), Postives = 43/68 (63.24%), Query Frame = 2
Query:  458 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 661
            ITAF++E+G  G +      K+G++ S+T E++F+   VP+ENVLG+ G G  V M  L+  R  +AA
Sbjct:  279 ITAFVVERGFGGVTHGPPEKKMGIKASNTAEVLFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAA 346          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACDSB_DICDI (Probable short/branched chain specific acyl-CoA dehydrogenase OS=Dictyostelium discoideum GN=acadsb PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.910e-25
Identity = 33/72 (45.83%), Postives = 48/72 (66.67%), Query Frame = 2
Query:  446 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 661
            G KGITAFI+E   PG    +K DKLG+R S TCE++ +NC V   ++LG+ G+G  + + GL+  R+ +AA
Sbjct:  207 GYKGITAFIVESNNPGLRIGKKEDKLGIRASSTCEVILDNCVVKPTDILGELGRGYKIAIEGLNEGRIGIAA 278          

HSP 2 Score: 64.3142 bits (155), Expect = 2.910e-25
Identity = 39/131 (29.77%), Postives = 65/131 (49.62%), Query Frame = 3
Query:   39 LWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADR-VDGGYIINGNKMWCTNGPVAQTLVVYA 428
            L K + + NL GI                 IA+EE+++   ++ +     + L  N + R+GS  Q++KYL  +++   VG+  +SE  +GSD   +  +A R  DG +++NG K W TN   A   +V A
Sbjct:   71 LLKDLFDMNLMGIDISDSYGGANMNFMGSIIAIEELAKVDPAISVIVDVQNTLVNNCINRYGSIQQREKYL-SMLATNTVGSFCLSESGSGSDAFALATRAVRQSDGTFVLNGTKQWITNAKEAGVFIVMA 200          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACDSB_RAT (Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Acadsb PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.925e-25
Identity = 41/101 (40.59%), Postives = 62/101 (61.39%), Query Frame = 3
Query:  129 IAMEEISRASGSVGLSYGAHSNLCINQLVR-HGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYA 428
            + +EE+++   SV L      N  IN+L R HG+  QK  YLPKL++ E +G+  +SE  AGSD   +K +AD+    Y+ING+KMW +N   A+  +V+A
Sbjct:  123 LVIEELAKVDASVALLCDIQ-NTVINKLFRKHGTEEQKATYLPKLVT-EKLGSFCLSEAGAGSDSFALKTRADKSGNYYVINGSKMWISNAEHAELFLVFA 221          

HSP 2 Score: 60.8474 bits (146), Expect = 4.925e-25
Identity = 28/73 (38.36%), Postives = 46/73 (63.01%), Query Frame = 2
Query:  443 AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 661
            +G +GIT F++++   GF   ++ +K+G+R S TC+L FEN  VP  +VLG+ G G    +  L+  R+ +AA
Sbjct:  227 SGYRGITCFLVDRDTEGFQIGRRENKMGIRASSTCQLTFENVKVPETSVLGKIGHGYKYAIGSLNEGRIGIAA 299          
The following BLAST results are available for this feature:
BLAST of FC930072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
ACADL_MOUSE2.354e-2829.55Long-chain specific acyl-CoA dehydrogenase, mitoch... [more]
ACADL_RAT3.065e-2829.55Long-chain specific acyl-CoA dehydrogenase, mitoch... [more]
ACADL_HUMAN1.146e-2729.55Long-chain specific acyl-CoA dehydrogenase, mitoch... [more]
ACADS_BOVIN1.493e-2733.33Short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
ACAD9_MOUSE3.272e-2732.35Acyl-CoA dehydrogenase family member 9, mitochondr... [more]
ACADV_HUMAN1.590e-2631.69Very long-chain specific acyl-CoA dehydrogenase, m... [more]
ACADL_MACFA7.786e-2627.27Long-chain specific acyl-CoA dehydrogenase, mitoch... [more]
ACADV_MACFA1.310e-2534.15Very long-chain specific acyl-CoA dehydrogenase, m... [more]
ACDSB_DICDI2.910e-2545.83Probable short/branched chain specific acyl-CoA de... [more]
ACDSB_RAT4.925e-2540.59Short/branched chain specific acyl-CoA dehydrogena... [more]

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Properties
Property NameValue
Genbank descriptionC34003E03EF PostHarvC1 Citrus clementina cDNA clone C34003E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930072 ID=FC930072; Name=FC930072; organism=Citrus clementina; type=EST; length=668bp
TGTGATTTTGGTTGTCCCTCTTGCTACAGGATGTTAATTTATGGAAACTC
ATGGGAAATTTCAATCTCCATGGAATAACAGCTCCACAGGAATACGGAGG
GCTTGGACTTGGTTACTTGTATCATTGCATAGCAATGGAAGAAATTAGCC
GTGCGTCGGGGTCTGTTGGTCTCTCTTACGGTGCCCATTCTAATTTGTGC
ATCAATCAATTGGTGAGACATGGAAGCCCTGCTCAGAAAGACAAGTACTT
GCCCAAGCTCATTAGCGGAGAACATGTAGGTGCTCTTGCCATGAGTGAAC
CCAACGCTGGCTCTGATGTTGTTGGCATGAAATGCAAAGCTGATCGCGTA
GATGGGGGTTATATTATAAATGGGAACAAGATGTGGTGCACCAATGGTCC
AGTTGCTCAGACGTTGGTTGTTTACGCAAAAACAACATTAAAGCTGGCTC
AAAAGGAATCACAGCATTTATCATAGAGAAAGGAATGCCCGGATTCAGCA
CTGCCCAGAAGTTAGACAAGCTCGGGATGAGAGGAAGTGATACATGTGAG
CTTGTATTTGAGAATTGCTTTGTTCCAAATGAGAATGTTCTTGGGCAGGA
AGGAAAAGGAGTTTATGTTATGATGTCAGGGCTAGATTTGGAGAGGCTTG
TTTTGGCAGCTGGGCCCC
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