FC930072

Overview
NameFC930072
Unique NameFC930072
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1870 contig Ccv1_Contig1870:204..873. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACDSB_MOUSE (Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acadsb PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.925e-25
Identity = 36/100 (36.00%), Postives = 59/100 (59.00%), Query Frame = 3 
Query:  129 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYA 428
            + +EE+++   SV L     + +  N   +H S  QK  YLPKL++ E +G+  +SE  AGSD   MK +AD+    Y++NG+KMW ++   A+  +V+A
Sbjct:  123 LVIEELAKVDASVALLCDIQNTIINNLFRKHASEEQKATYLPKLVT-EKLGSFCLSEAGAGSDSFAMKTRADKSGNYYVLNGSKMWISHAEHAELFLVFA 221

HSP 2 Score: 62.3882 bits (150), Expect = 4.925e-25
Identity = 28/73 (38.36%), Postives = 46/73 (63.01%), Query Frame = 2 
Query:  443 AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 661
            +G +GIT F++++   GF   ++ +K+G+R S TC+L FEN  VP  N+LG+ G G    +  L+  R+ +AA
Sbjct:  227 SGYRGITCFLVDRDTEGFQIGKRENKMGIRASSTCQLTFENVKVPETNILGKIGHGYKYAIGSLNEGRIGIAA 299
[Close]
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACDSB_PONAB (Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial OS=Pongo abelii GN=ACADSB PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.052e-24
Identity = 43/131 (32.82%), Postives = 66/131 (50.38%), Query Frame = 3 
Query:   66 LHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVR-HGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTTLKLAQK 455
            L GI    E            + +EE+++   SV + +    N  IN L+R HG+  QK  YLP+L + E VG+  +SE  AGSD   +K +AD+    Y++NG+KMW ++   A   +V A     +  K
Sbjct:  102 LMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAV-FCEIQNTLINTLIRKHGTEEQKGTYLPQLTT-EKVGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYK 230

HSP 2 Score: 64.3142 bits (155), Expect = 4.052e-24
Identity = 31/72 (43.06%), Postives = 44/72 (61.11%), Query Frame = 2 
Query:  446 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 661
            G KGIT+F++++  PG    +  +KLG+R S TC L FEN  VP  N+LGQ G G    +  L+  R+ +AA
Sbjct:  228 GYKGITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPETNILGQIGHGYKYAIGSLNEGRIGIAA 299
[Close]
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACDSB_HUMAN (Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADSB PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.273e-24
Identity = 43/131 (32.82%), Postives = 66/131 (50.38%), Query Frame = 3 
Query:   66 LHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVR-HGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTTLKLAQK 455
            L GI    E            + +EE+++   SV + +    N  IN L+R HG+  QK  YLP+L + E VG+  +SE  AGSD   +K +AD+    Y++NG+KMW ++   A   +V A     +  K
Sbjct:  102 LMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAV-FCEIQNTLINTLIRKHGTEEQKATYLPQLTT-EKVGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYK 230

HSP 2 Score: 64.3142 bits (155), Expect = 5.273e-24
Identity = 31/72 (43.06%), Postives = 44/72 (61.11%), Query Frame = 2 
Query:  446 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 661
            G KGIT+F++++  PG    +  +KLG+R S TC L FEN  VP  N+LGQ G G    +  L+  R+ +AA
Sbjct:  228 GYKGITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLNEGRIGIAA 299
[Close]
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACADV_BOVIN (Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=ACADVL PE=2 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 8.865e-24
Identity = 42/123 (34.15%), Postives = 66/123 (53.66%), Query Frame = 3 
Query:   72 GITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKT 434
            G+  P E          +   +E +      VG+  GAH ++    ++  G+ AQK+KYLPKL SGE + A  ++EP++GSD   ++  A     G  Y +NG+K+W +NG +A    V+AKT
Sbjct:  143 GLQVPNELGGVGLCNTQYARLVEIVGMYDLGVGIVLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETIAAFCLTEPSSGSDAASIRSSAVPSPCGKYYTLNGSKIWISNGGLADIFTVFAKT 265

HSP 2 Score: 50.447 bits (119), Expect = 8.865e-24
Identity = 27/68 (39.71%), Postives = 40/68 (58.82%), Query Frame = 2 
Query:  458 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 661
            ITAF++E+   G +      K+G++ S+T E+ F+   VP ENVLG+ G G  V M  L+  R  +AA
Sbjct:  279 ITAFVVERSFGGVTHGPPEKKMGIKASNTAEVYFDGVRVPAENVLGEVGGGFKVAMHILNNGRFGMAA 346
[Close]
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACADV_MOUSE (Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acadvl PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 5.597e-23
Identity = 39/126 (30.95%), Postives = 69/126 (54.76%), Query Frame = 3 
Query:   72 GITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTTLK 443
            G+  P E          +    E +      V ++ GAH ++    ++ +G+ AQ++KYLP++ SG+ + A  ++EP++GSDV  ++  A     G  Y +NG+K+W +NG +A    V+AKT +K
Sbjct:  144 GLQVPSELGGLGLSNTQYARLAEIVGMHDLGVSVTLGAHQSIGFKGILLYGTKAQREKYLPRVASGQALAAFCLTEPSSGSDVASIRSSAIPSPCGKYYTLNGSKIWISNGGLADIFTVFAKTPIK 269

HSP 2 Score: 50.447 bits (119), Expect = 5.597e-23
Identity = 26/68 (38.24%), Postives = 42/68 (61.76%), Query Frame = 2 
Query:  458 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 661
            ITAF++E+   G +      K+G++ S+T E+ F+   VP+ENVLG+ G G  V ++ L+  R  +AA
Sbjct:  280 ITAFVVERSFGGVTHGLPEKKMGIKASNTSEVYFDGVKVPSENVLGEVGDGFKVAVNILNNGRFGMAA 347
[Close]
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACADV_RAT (Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Acadvl PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.598e-23
Identity = 40/126 (31.75%), Postives = 69/126 (54.76%), Query Frame = 3 
Query:   72 GITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTTLK 443
            G+  P E          +    E +      V ++ GAH ++    ++ +G+ AQK+KYLP++ SG+ + A  ++EP++GSDV  ++  A     G  Y +NG+K+W +NG +A    V+AKT +K
Sbjct:  143 GLQVPSELGGLGLSNTQYARLAEIVGMHDLGVSVTLGAHQSIGFKGILLYGTKAQKEKYLPRVASGQALAAFCLTEPSSGSDVASIRSSAVPSPCGKYYTLNGSKIWISNGGLADIFTVFAKTPIK 268

HSP 2 Score: 49.2914 bits (116), Expect = 5.598e-23
Identity = 26/68 (38.24%), Postives = 41/68 (60.29%), Query Frame = 2 
Query:  458 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 661
            ITAF++E+   G +      K+G++ S+T E+ F+   VP ENVLG+ G G  V ++ L+  R  +AA
Sbjct:  279 ITAFVVERSFGGVTHGLPEKKMGIKASNTSEVYFDGVKVPAENVLGEVGDGFKVAVNILNNGRFGMAA 346
[Close]
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACADM_DROME (Probable medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Drosophila melanogaster GN=CG12262 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.643e-23
Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = 3 
Query:  126 CIAMEEISRASGSVGLSYGAH-SNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 434
            C++ EE+  A G  G+      S L    ++  G+  QK KYL +L+    V A  ++EP AGSDV G+K +A++    ++ING KMW TNG VA    V A+T
Sbjct:  102 CLSAEEL--AYGCTGIMTALEASGLGQTPVILSGNKEQKKKYLGRLLEEPLVAAYCVTEPGAGSDVSGIKTRAEKKGDEWVINGQKMWITNGGVANWYFVLART 203

HSP 2 Score: 57.3806 bits (137), Expect = 5.643e-23
Identity = 31/72 (43.06%), Postives = 40/72 (55.56%), Query Frame = 2 
Query:  449 SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAG 664
            SK  T FI+E+  PG +  +K   +G R SDT  + FE+  VP ENVL  EG G  + M   D  R  +AAG
Sbjct:  212 SKAFTGFIVERDSPGLTPGRKELNMGQRASDTRGITFEDVRVPKENVLIGEGAGFKIAMGTFDKTRPPVAAG 283
[Close]
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACADM_PANTR (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Pan troglodytes GN=ACADM PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 2.246e-21
Identity = 45/132 (34.09%), Postives = 64/132 (48.48%), Query Frame = 3 
Query:   42 WKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 434
            W+L G  N H    P+            C+  EE+  A G  G+      N L    ++  G+  QK KYL ++     + A  ++EP AGSDV G+K KA++    YIING KMW TNG  A    + A++
Sbjct:   82 WEL-GLMNTH---IPENCGGLGLGTFDACLISEEL--AYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARS 207

HSP 2 Score: 57.3806 bits (137), Expect = 2.246e-21
Identity = 32/72 (44.44%), Postives = 40/72 (55.56%), Query Frame = 2 
Query:  449 SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAG 664
            +K  T FI+E   PG    +K   +G R SDT  +VFE+  VP ENVL  +G G  V M   D  R V+AAG
Sbjct:  216 NKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPRENVLIGDGAGFKVAMGAFDKTRPVVAAG 287
[Close]
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACADM_HUMAN (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADM PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 2.246e-21
Identity = 45/132 (34.09%), Postives = 64/132 (48.48%), Query Frame = 3 
Query:   42 WKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 434
            W+L G  N H    P+            C+  EE+  A G  G+      N L    ++  G+  QK KYL ++     + A  ++EP AGSDV G+K KA++    YIING KMW TNG  A    + A++
Sbjct:   82 WEL-GLMNTH---IPENCGGLGLGTFDACLISEEL--AYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARS 207

HSP 2 Score: 57.3806 bits (137), Expect = 2.246e-21
Identity = 32/72 (44.44%), Postives = 40/72 (55.56%), Query Frame = 2 
Query:  449 SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAG 664
            +K  T FI+E   PG    +K   +G R SDT  +VFE+  VP ENVL  +G G  V M   D  R V+AAG
Sbjct:  216 NKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKTRPVVAAG 287
[Close]
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACADM_RAT (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Acadm PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 6.432e-21
Identity = 44/132 (33.33%), Postives = 65/132 (49.24%), Query Frame = 3 
Query:   42 WKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 434
            W+L G  N H    P+            C+  EE+  A G  G+     +N L    ++  G+  QK KYL ++     + A  ++EP+AGSDV G+K KA++    Y+ING KMW TNG  A    V  ++
Sbjct:   82 WEL-GLINTH---IPESCGGLGLGTFDACLITEEL--AYGCTGVQTAIEANSLGQMPVIIAGNDQQKKKYLGRMTEQPMMCAYCVTEPSAGSDVAGIKTKAEKKGDEYVINGQKMWITNGGKANWYFVLTRS 207

HSP 2 Score: 55.8398 bits (133), Expect = 6.432e-21
Identity = 31/72 (43.06%), Postives = 38/72 (52.78%), Query Frame = 2 
Query:  449 SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAG 664
            SK  T FI+E   PG    +K   +G R SDT  + FE+  VP ENVL  EG G  + M   D  R  +AAG
Sbjct:  216 SKAFTGFIVEADTPGIHIGKKELNMGQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAMGAFDRTRPTVAAG 287
The following BLAST results are available for this feature:
BLAST of FC930072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
ACDSB_MOUSE4.925e-2536.00Short/branched chain specific acyl-CoA dehydrogena... [more]
ACDSB_PONAB4.052e-2432.82Short/branched chain specific acyl-CoA dehydrogena... [more]
ACDSB_HUMAN5.273e-2432.82Short/branched chain specific acyl-CoA dehydrogena... [more]
ACADV_BOVIN8.865e-2434.15Very long-chain specific acyl-CoA dehydrogenase, m... [more]
ACADV_MOUSE5.597e-2330.95Very long-chain specific acyl-CoA dehydrogenase, m... [more]
ACADV_RAT5.598e-2331.75Very long-chain specific acyl-CoA dehydrogenase, m... [more]
ACADM_DROME5.643e-2339.42Probable medium-chain specific acyl-CoA dehydrogen... [more]
ACADM_PANTR2.246e-2134.09Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACADM_HUMAN2.246e-2134.09Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACADM_RAT6.432e-2133.33Medium-chain specific acyl-CoA dehydrogenase, mito... [more]

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Properties
Property NameValue
Genbank descriptionC34003E03EF PostHarvC1 Citrus clementina cDNA clone C34003E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930072 ID=FC930072; Name=FC930072; organism=Citrus clementina; type=EST; length=668bp
TGTGATTTTGGTTGTCCCTCTTGCTACAGGATGTTAATTTATGGAAACTC
ATGGGAAATTTCAATCTCCATGGAATAACAGCTCCACAGGAATACGGAGG
GCTTGGACTTGGTTACTTGTATCATTGCATAGCAATGGAAGAAATTAGCC
GTGCGTCGGGGTCTGTTGGTCTCTCTTACGGTGCCCATTCTAATTTGTGC
ATCAATCAATTGGTGAGACATGGAAGCCCTGCTCAGAAAGACAAGTACTT
GCCCAAGCTCATTAGCGGAGAACATGTAGGTGCTCTTGCCATGAGTGAAC
CCAACGCTGGCTCTGATGTTGTTGGCATGAAATGCAAAGCTGATCGCGTA
GATGGGGGTTATATTATAAATGGGAACAAGATGTGGTGCACCAATGGTCC
AGTTGCTCAGACGTTGGTTGTTTACGCAAAAACAACATTAAAGCTGGCTC
AAAAGGAATCACAGCATTTATCATAGAGAAAGGAATGCCCGGATTCAGCA
CTGCCCAGAAGTTAGACAAGCTCGGGATGAGAGGAAGTGATACATGTGAG
CTTGTATTTGAGAATTGCTTTGTTCCAAATGAGAATGTTCTTGGGCAGGA
AGGAAAAGGAGTTTATGTTATGATGTCAGGGCTAGATTTGGAGAGGCTTG
TTTTGGCAGCTGGGCCCC
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