FC930072

Overview
NameFC930072
Unique NameFC930072
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1870 contig Ccv1_Contig1870:204..873. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACADM_PIG (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Sus scrofa GN=ACADM PE=1 SV=3)

HSP 1 Score: 64.6994 bits (156), Expect = 6.432e-21
Identity = 45/132 (34.09%), Postives = 65/132 (49.24%), Query Frame = 3
Query:   42 WKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 434
            W+L G  N H    P+            C+  EE+  A G  G+     +N L    L+  G+  Q+ KYL ++     + A  ++EP AGSDV G+K KA++    YIING KMW TNG  A    + A++
Sbjct:   82 WEL-GLMNTH---IPESFGGLGLGIIDSCLITEEL--AYGCTGVQTAIEANTLGQVPLIIGGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARS 207          

HSP 2 Score: 56.9954 bits (136), Expect = 6.432e-21
Identity = 32/72 (44.44%), Postives = 39/72 (54.17%), Query Frame = 2
Query:  449 SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAG 664
            SK  T FI+E   PG    +K   +G R SDT  +VFE+  VP ENVL  EG G  + M   D  R  +AAG
Sbjct:  216 SKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEGAGFKIAMGTFDKTRPPVAAG 287          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACDP_MYCTU (Probable acyl-CoA dehydrogenase fadE25 OS=Mycobacterium tuberculosis GN=fadE25 PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 6.442e-21
Identity = 29/72 (40.28%), Postives = 44/72 (61.11%), Query Frame = 2
Query:  446 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 661
            G+ GI+AF++ K   GF+   K  KLG++GS T EL FENC +P + ++G+ G G    ++ LD  R  + A
Sbjct:  186 GANGISAFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFKTALATLDHTRPTIGA 257          

HSP 2 Score: 58.5362 bits (140), Expect = 6.442e-21
Identity = 38/128 (29.69%), Postives = 58/128 (45.31%), Query Frame = 3
Query:   51 MGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 434
            + +   + +  P+E           CI +EE++R   S  L   A + L    L+  GS   K + LP L +   + + A+SE  AGSD   M+ +A      +I+NG K W TNG  +    V A T
Sbjct:   55 LNSSGFNAVHIPEEYGGQGADSVATCIVIEEVARVDASASL-IPAVNKLGTMGLILRGSEELKKQVLPALAAEGAMASYALSEREAGSDAASMRTRAKADGDHWILNGAKCWITNGGKSTWYTVMAVT 181          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACDP_MYCBO (Probable acyl-CoA dehydrogenase fadE25 OS=Mycobacterium bovis GN=fadE25 PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 6.442e-21
Identity = 29/72 (40.28%), Postives = 44/72 (61.11%), Query Frame = 2
Query:  446 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 661
            G+ GI+AF++ K   GF+   K  KLG++GS T EL FENC +P + ++G+ G G    ++ LD  R  + A
Sbjct:  186 GANGISAFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFKTALATLDHTRPTIGA 257          

HSP 2 Score: 58.5362 bits (140), Expect = 6.442e-21
Identity = 38/128 (29.69%), Postives = 58/128 (45.31%), Query Frame = 3
Query:   51 MGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 434
            + +   + +  P+E           CI +EE++R   S  L   A + L    L+  GS   K + LP L +   + + A+SE  AGSD   M+ +A      +I+NG K W TNG  +    V A T
Sbjct:   55 LNSSGFNAVHIPEEYGGQGADSVATCIVIEEVARVDASASL-IPAVNKLGTMGLILRGSEELKKQVLPALAAEGAMASYALSEREAGSDAASMRTRAKADGDHWILNGAKCWITNGGKSTWYTVMAVT 181          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACDP_MYCLE (Probable acyl-CoA dehydrogenase fadE25 OS=Mycobacterium leprae GN=fadE25 PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 8.380e-21
Identity = 29/72 (40.28%), Postives = 43/72 (59.72%), Query Frame = 2
Query:  446 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 661
            G+ GI+AFI+ K   GFS   K  KLG++GS T EL F+ C +P + ++G+ G G    ++ LD  R  + A
Sbjct:  186 GANGISAFIVHKDDEGFSIGPKEKKLGIKGSPTTELYFDKCRIPGDRIIGEPGTGFKTALATLDHTRPTIGA 257          

HSP 2 Score: 59.3066 bits (142), Expect = 8.380e-21
Identity = 39/122 (31.97%), Postives = 56/122 (45.90%), Query Frame = 3
Query:   69 HGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 434
            + I  P+E           CI +EE++R   S  L   A + L    L+  GS   K + LP L +   + + A+SE  AGSD   M+ +A      +I+NG K W TNG  +    V A T
Sbjct:   61 NAIHVPEEYGGQGADSVAACIVIEEVARVDASASL-IPAVNKLGTMGLILRGSEELKKQVLPSLAAEGAMASYALSEREAGSDAASMRTRAKADGDDWILNGFKCWITNGGKSTWYTVMAVT 181          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACADM_MOUSE (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acadm PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.841e-20
Identity = 43/132 (32.58%), Postives = 65/132 (49.24%), Query Frame = 3
Query:   42 WKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 434
            W+L G  N H    P+            C+  EE+  A G  G+     +N L    ++  G+  QK KYL ++     + A  ++EP+AGSDV  +K KA++    Y+ING KMW TNG  A    + A++
Sbjct:   82 WEL-GLINAH---IPESCGGLGLGTFDACLITEEL--AYGCTGVQTAIEANSLGQMPVILAGNDQQKKKYLGRMTEQPMMCAYCVTEPSAGSDVAAIKTKAEKKGDEYVINGQKMWITNGGKANWYFLLARS 207          

HSP 2 Score: 55.8398 bits (133), Expect = 1.841e-20
Identity = 31/72 (43.06%), Postives = 38/72 (52.78%), Query Frame = 2
Query:  449 SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAG 664
            SK  T FI+E   PG    +K   +G R SDT  + FE+  VP ENVL  EG G  + M   D  R  +AAG
Sbjct:  216 SKAFTGFIVEADTPGIHIGKKELNMGQRCSDTRGIAFEDVRVPKENVLIGEGAGFKIAMGAFDRTRPTVAAG 287          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACADM_BOVIN (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=ACADM PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 8.915e-20
Identity = 44/132 (33.33%), Postives = 65/132 (49.24%), Query Frame = 3
Query:   42 WKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 434
            W+L G  N H    P+            C+  EE+  A G  G+     +N L    ++  G+  Q+ KYL ++     + A  ++EP AGSDV G+K KA++    YIING KMW TNG  A    + A++
Sbjct:   82 WEL-GLMNTH---IPESCGGLGLGTFDSCLISEEL--AYGCTGVQTAIEANSLGQMPVIIAGNDQQQKKYLGRMTEEPLMCAYCVTEPVAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARS 207          

HSP 2 Score: 54.299 bits (129), Expect = 8.915e-20
Identity = 31/71 (43.66%), Postives = 38/71 (53.52%), Query Frame = 2
Query:  449 SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 661
            SK  T FI+E   PG    +K   +G R SDT  +VFE+  VP ENVL  EG G  + M   D  R  +AA
Sbjct:  216 SKAFTGFIVEADTPGVQIGRKELNMGQRCSDTRGIVFEDVRVPKENVLIGEGAGFKIAMGAFDKTRPPVAA 286          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACADM_CAEEL (Probable medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=T08G2.3 PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.160e-19
Identity = 34/93 (36.56%), Postives = 50/93 (53.76%), Query Frame = 3
Query:  159 GSVGLSYGAHS-NLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 434
            G  G+  G    +L I  +   G+  QK KYL  L +   + +  ++EP AGSDV G+K K ++    YIING+K W T G  A+   V A++
Sbjct:  105 GCTGIQLGIMGPSLAIAPVYISGNEEQKKKYLGALAAEPIIASYCVTEPGAGSDVNGVKTKCEKKGDEYIINGSKAWITGGGHAKWFFVLARS 197          

HSP 2 Score: 58.151 bits (139), Expect = 1.160e-19
Identity = 31/71 (43.66%), Postives = 40/71 (56.34%), Query Frame = 2
Query:  452 KGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAG 664
            K  TAFI++   PG +  +K   +G R SDT  + FE+  VP ENVLG  G G  V M   D+ R  +AAG
Sbjct:  207 KAFTAFIVDGDTPGITRGKKEKNMGQRCSDTRVITFEDVRVPAENVLGAPGAGFKVAMEAFDMTRPGVAAG 277          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACADM_MACFA (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis GN=ACADM PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 4.313e-19
Identity = 46/132 (34.85%), Postives = 64/132 (48.48%), Query Frame = 3
Query:   42 WKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 434
            W+L G  N H    PQ            C+  EE+  A G  G+      N L    ++  G+  QK KYL ++     + A  ++EP AGSDV G+K KA++    YIING KMW TNG  A    + A++
Sbjct:   82 WEL-GLMNPH---IPQNCGGLGLGTFDACLISEEL--AYGCTGVQTAIEGNSLGQMPIIIAGNEQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKASWYFLLARS 207          

HSP 2 Score: 49.2914 bits (116), Expect = 4.313e-19
Identity = 27/72 (37.50%), Postives = 38/72 (52.78%), Query Frame = 2
Query:  449 SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAG 664
            +K  T FI+E   PG    +K   +G R SDT  +VFE+  V  ENVL  +G G  + M   D  R  +++G
Sbjct:  216 NKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVLKENVLIGDGAGFKIAMGAFDKTRPTVSSG 287          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACOX4_ARATH (Acyl-coenzyme A oxidase 4, peroxisomal OS=Arabidopsis thaliana GN=ACX4 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.523e-18
Identity = 41/105 (39.05%), Postives = 58/105 (55.24%), Query Frame = 3
Query:  123 HCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTT 437
            + IA  EI+R   S       HS+L +  +   GS AQK+KYLP L     V   A++EP+ GSD  G+   A +V+GG+ ING K W  N   A  L+++A+ T
Sbjct:  118 NAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNT 222          

HSP 2 Score: 35.039 bits (79), Expect = 3.523e-18
Identity = 15/45 (33.33%), Postives = 27/45 (60.00%), Query Frame = 2
Query:  458 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVL 592
            I  FI++K  PG    +  +K+G+R     +++ +N FVP+E+ L
Sbjct:  227 INGFIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRL 271          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACAD8_BOVIN (Isobutyryl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=ACAD8 PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 3.526e-18
Identity = 28/72 (38.89%), Postives = 44/72 (61.11%), Query Frame = 2
Query:  446 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 661
            G +GI+  ++EKG PG S  +K  K+G     T  ++FE+C VP  N +G EG+G  + M GL+  R+ +A+
Sbjct:  212 GPRGISCVVVEKGTPGLSFGKKEKKVGWNSQPTQAVIFEDCAVPVANRIGDEGQGFLIAMKGLNGGRINVAS 283          

HSP 2 Score: 51.9878 bits (123), Expect = 3.526e-18
Identity = 27/87 (31.03%), Postives = 45/87 (51.72%), Query Frame = 3
Query:  174 SYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 434
            +Y +  N+C+  + R GS  Q+ +  P L + E   +  ++EP +GSD   +   A R    YI+NG+K + + G  A   VV  +T
Sbjct:  122 AYMSIHNMCVWIIDRFGSEEQRHRLCPPLCTMEKFASYCLTEPGSGSDAASLMTSAVRQHDHYILNGSKAFISGGGEADIYVVMCRT 208          
The following BLAST results are available for this feature:
BLAST of FC930072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
ACADM_PIG6.432e-2134.09Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACDP_MYCTU6.442e-2140.28Probable acyl-CoA dehydrogenase fadE25 OS=Mycobact... [more]
ACDP_MYCBO6.442e-2140.28Probable acyl-CoA dehydrogenase fadE25 OS=Mycobact... [more]
ACDP_MYCLE8.380e-2140.28Probable acyl-CoA dehydrogenase fadE25 OS=Mycobact... [more]
ACADM_MOUSE1.841e-2032.58Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACADM_BOVIN8.915e-2033.33Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACADM_CAEEL1.160e-1936.56Probable medium-chain specific acyl-CoA dehydrogen... [more]
ACADM_MACFA4.313e-1934.85Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACOX4_ARATH3.523e-1839.05Acyl-coenzyme A oxidase 4, peroxisomal OS=Arabidop... [more]
ACAD8_BOVIN3.526e-1838.89Isobutyryl-CoA dehydrogenase, mitochondrial OS=Bos... [more]

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Properties
Property NameValue
Genbank descriptionC34003E03EF PostHarvC1 Citrus clementina cDNA clone C34003E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930072 ID=FC930072; Name=FC930072; organism=Citrus clementina; type=EST; length=668bp
TGTGATTTTGGTTGTCCCTCTTGCTACAGGATGTTAATTTATGGAAACTC
ATGGGAAATTTCAATCTCCATGGAATAACAGCTCCACAGGAATACGGAGG
GCTTGGACTTGGTTACTTGTATCATTGCATAGCAATGGAAGAAATTAGCC
GTGCGTCGGGGTCTGTTGGTCTCTCTTACGGTGCCCATTCTAATTTGTGC
ATCAATCAATTGGTGAGACATGGAAGCCCTGCTCAGAAAGACAAGTACTT
GCCCAAGCTCATTAGCGGAGAACATGTAGGTGCTCTTGCCATGAGTGAAC
CCAACGCTGGCTCTGATGTTGTTGGCATGAAATGCAAAGCTGATCGCGTA
GATGGGGGTTATATTATAAATGGGAACAAGATGTGGTGCACCAATGGTCC
AGTTGCTCAGACGTTGGTTGTTTACGCAAAAACAACATTAAAGCTGGCTC
AAAAGGAATCACAGCATTTATCATAGAGAAAGGAATGCCCGGATTCAGCA
CTGCCCAGAAGTTAGACAAGCTCGGGATGAGAGGAAGTGATACATGTGAG
CTTGTATTTGAGAATTGCTTTGTTCCAAATGAGAATGTTCTTGGGCAGGA
AGGAAAAGGAGTTTATGTTATGATGTCAGGGCTAGATTTGGAGAGGCTTG
TTTTGGCAGCTGGGCCCC
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