FC930072
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACADM_PIG (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Sus scrofa GN=ACADM PE=1 SV=3) HSP 1 Score: 64.6994 bits (156), Expect = 6.432e-21 Identity = 45/132 (34.09%), Postives = 65/132 (49.24%), Query Frame = 3 Query: 42 WKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 434 W+L G N H P+ C+ EE+ A G G+ +N L L+ G+ Q+ KYL ++ + A ++EP AGSDV G+K KA++ YIING KMW TNG A + A++ Sbjct: 82 WEL-GLMNTH---IPESFGGLGLGIIDSCLITEEL--AYGCTGVQTAIEANTLGQVPLIIGGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARS 207 HSP 2 Score: 56.9954 bits (136), Expect = 6.432e-21 Identity = 32/72 (44.44%), Postives = 39/72 (54.17%), Query Frame = 2 Query: 449 SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAG 664 SK T FI+E PG +K +G R SDT +VFE+ VP ENVL EG G + M D R +AAG Sbjct: 216 SKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEGAGFKIAMGTFDKTRPPVAAG 287
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACDP_MYCTU (Probable acyl-CoA dehydrogenase fadE25 OS=Mycobacterium tuberculosis GN=fadE25 PE=3 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 6.442e-21 Identity = 29/72 (40.28%), Postives = 44/72 (61.11%), Query Frame = 2 Query: 446 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 661 G+ GI+AF++ K GF+ K KLG++GS T EL FENC +P + ++G+ G G ++ LD R + A Sbjct: 186 GANGISAFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFKTALATLDHTRPTIGA 257 HSP 2 Score: 58.5362 bits (140), Expect = 6.442e-21 Identity = 38/128 (29.69%), Postives = 58/128 (45.31%), Query Frame = 3 Query: 51 MGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 434 + + + + P+E CI +EE++R S L A + L L+ GS K + LP L + + + A+SE AGSD M+ +A +I+NG K W TNG + V A T Sbjct: 55 LNSSGFNAVHIPEEYGGQGADSVATCIVIEEVARVDASASL-IPAVNKLGTMGLILRGSEELKKQVLPALAAEGAMASYALSEREAGSDAASMRTRAKADGDHWILNGAKCWITNGGKSTWYTVMAVT 181
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACDP_MYCBO (Probable acyl-CoA dehydrogenase fadE25 OS=Mycobacterium bovis GN=fadE25 PE=3 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 6.442e-21 Identity = 29/72 (40.28%), Postives = 44/72 (61.11%), Query Frame = 2 Query: 446 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 661 G+ GI+AF++ K GF+ K KLG++GS T EL FENC +P + ++G+ G G ++ LD R + A Sbjct: 186 GANGISAFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFKTALATLDHTRPTIGA 257 HSP 2 Score: 58.5362 bits (140), Expect = 6.442e-21 Identity = 38/128 (29.69%), Postives = 58/128 (45.31%), Query Frame = 3 Query: 51 MGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 434 + + + + P+E CI +EE++R S L A + L L+ GS K + LP L + + + A+SE AGSD M+ +A +I+NG K W TNG + V A T Sbjct: 55 LNSSGFNAVHIPEEYGGQGADSVATCIVIEEVARVDASASL-IPAVNKLGTMGLILRGSEELKKQVLPALAAEGAMASYALSEREAGSDAASMRTRAKADGDHWILNGAKCWITNGGKSTWYTVMAVT 181
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACDP_MYCLE (Probable acyl-CoA dehydrogenase fadE25 OS=Mycobacterium leprae GN=fadE25 PE=3 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 8.380e-21 Identity = 29/72 (40.28%), Postives = 43/72 (59.72%), Query Frame = 2 Query: 446 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 661 G+ GI+AFI+ K GFS K KLG++GS T EL F+ C +P + ++G+ G G ++ LD R + A Sbjct: 186 GANGISAFIVHKDDEGFSIGPKEKKLGIKGSPTTELYFDKCRIPGDRIIGEPGTGFKTALATLDHTRPTIGA 257 HSP 2 Score: 59.3066 bits (142), Expect = 8.380e-21 Identity = 39/122 (31.97%), Postives = 56/122 (45.90%), Query Frame = 3 Query: 69 HGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 434 + I P+E CI +EE++R S L A + L L+ GS K + LP L + + + A+SE AGSD M+ +A +I+NG K W TNG + V A T Sbjct: 61 NAIHVPEEYGGQGADSVAACIVIEEVARVDASASL-IPAVNKLGTMGLILRGSEELKKQVLPSLAAEGAMASYALSEREAGSDAASMRTRAKADGDDWILNGFKCWITNGGKSTWYTVMAVT 181
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACADM_MOUSE (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acadm PE=1 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 1.841e-20 Identity = 43/132 (32.58%), Postives = 65/132 (49.24%), Query Frame = 3 Query: 42 WKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 434 W+L G N H P+ C+ EE+ A G G+ +N L ++ G+ QK KYL ++ + A ++EP+AGSDV +K KA++ Y+ING KMW TNG A + A++ Sbjct: 82 WEL-GLINAH---IPESCGGLGLGTFDACLITEEL--AYGCTGVQTAIEANSLGQMPVILAGNDQQKKKYLGRMTEQPMMCAYCVTEPSAGSDVAAIKTKAEKKGDEYVINGQKMWITNGGKANWYFLLARS 207 HSP 2 Score: 55.8398 bits (133), Expect = 1.841e-20 Identity = 31/72 (43.06%), Postives = 38/72 (52.78%), Query Frame = 2 Query: 449 SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAG 664 SK T FI+E PG +K +G R SDT + FE+ VP ENVL EG G + M D R +AAG Sbjct: 216 SKAFTGFIVEADTPGIHIGKKELNMGQRCSDTRGIAFEDVRVPKENVLIGEGAGFKIAMGAFDRTRPTVAAG 287
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACADM_BOVIN (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=ACADM PE=2 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 8.915e-20 Identity = 44/132 (33.33%), Postives = 65/132 (49.24%), Query Frame = 3 Query: 42 WKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 434 W+L G N H P+ C+ EE+ A G G+ +N L ++ G+ Q+ KYL ++ + A ++EP AGSDV G+K KA++ YIING KMW TNG A + A++ Sbjct: 82 WEL-GLMNTH---IPESCGGLGLGTFDSCLISEEL--AYGCTGVQTAIEANSLGQMPVIIAGNDQQQKKYLGRMTEEPLMCAYCVTEPVAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARS 207 HSP 2 Score: 54.299 bits (129), Expect = 8.915e-20 Identity = 31/71 (43.66%), Postives = 38/71 (53.52%), Query Frame = 2 Query: 449 SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 661 SK T FI+E PG +K +G R SDT +VFE+ VP ENVL EG G + M D R +AA Sbjct: 216 SKAFTGFIVEADTPGVQIGRKELNMGQRCSDTRGIVFEDVRVPKENVLIGEGAGFKIAMGAFDKTRPPVAA 286
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACADM_CAEEL (Probable medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=T08G2.3 PE=2 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 1.160e-19 Identity = 34/93 (36.56%), Postives = 50/93 (53.76%), Query Frame = 3 Query: 159 GSVGLSYGAHS-NLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 434 G G+ G +L I + G+ QK KYL L + + + ++EP AGSDV G+K K ++ YIING+K W T G A+ V A++ Sbjct: 105 GCTGIQLGIMGPSLAIAPVYISGNEEQKKKYLGALAAEPIIASYCVTEPGAGSDVNGVKTKCEKKGDEYIINGSKAWITGGGHAKWFFVLARS 197 HSP 2 Score: 58.151 bits (139), Expect = 1.160e-19 Identity = 31/71 (43.66%), Postives = 40/71 (56.34%), Query Frame = 2 Query: 452 KGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAG 664 K TAFI++ PG + +K +G R SDT + FE+ VP ENVLG G G V M D+ R +AAG Sbjct: 207 KAFTAFIVDGDTPGITRGKKEKNMGQRCSDTRVITFEDVRVPAENVLGAPGAGFKVAMEAFDMTRPGVAAG 277
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACADM_MACFA (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis GN=ACADM PE=2 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 4.313e-19 Identity = 46/132 (34.85%), Postives = 64/132 (48.48%), Query Frame = 3 Query: 42 WKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 434 W+L G N H PQ C+ EE+ A G G+ N L ++ G+ QK KYL ++ + A ++EP AGSDV G+K KA++ YIING KMW TNG A + A++ Sbjct: 82 WEL-GLMNPH---IPQNCGGLGLGTFDACLISEEL--AYGCTGVQTAIEGNSLGQMPIIIAGNEQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKASWYFLLARS 207 HSP 2 Score: 49.2914 bits (116), Expect = 4.313e-19 Identity = 27/72 (37.50%), Postives = 38/72 (52.78%), Query Frame = 2 Query: 449 SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAG 664 +K T FI+E PG +K +G R SDT +VFE+ V ENVL +G G + M D R +++G Sbjct: 216 NKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVLKENVLIGDGAGFKIAMGAFDKTRPTVSSG 287
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACOX4_ARATH (Acyl-coenzyme A oxidase 4, peroxisomal OS=Arabidopsis thaliana GN=ACX4 PE=1 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 3.523e-18 Identity = 41/105 (39.05%), Postives = 58/105 (55.24%), Query Frame = 3 Query: 123 HCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTT 437 + IA EI+R S HS+L + + GS AQK+KYLP L V A++EP+ GSD G+ A +V+GG+ ING K W N A L+++A+ T Sbjct: 118 NAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNT 222 HSP 2 Score: 35.039 bits (79), Expect = 3.523e-18 Identity = 15/45 (33.33%), Postives = 27/45 (60.00%), Query Frame = 2 Query: 458 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVL 592 I FI++K PG + +K+G+R +++ +N FVP+E+ L Sbjct: 227 INGFIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRL 271
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACAD8_BOVIN (Isobutyryl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=ACAD8 PE=2 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 3.526e-18 Identity = 28/72 (38.89%), Postives = 44/72 (61.11%), Query Frame = 2 Query: 446 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 661 G +GI+ ++EKG PG S +K K+G T ++FE+C VP N +G EG+G + M GL+ R+ +A+ Sbjct: 212 GPRGISCVVVEKGTPGLSFGKKEKKVGWNSQPTQAVIFEDCAVPVANRIGDEGQGFLIAMKGLNGGRINVAS 283 HSP 2 Score: 51.9878 bits (123), Expect = 3.526e-18 Identity = 27/87 (31.03%), Postives = 45/87 (51.72%), Query Frame = 3 Query: 174 SYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 434 +Y + N+C+ + R GS Q+ + P L + E + ++EP +GSD + A R YI+NG+K + + G A VV +T Sbjct: 122 AYMSIHNMCVWIIDRFGSEEQRHRLCPPLCTMEKFASYCLTEPGSGSDAASLMTSAVRQHDHYILNGSKAFISGGGEADIYVVMCRT 208 The following BLAST results are available for this feature:
BLAST of FC930072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 64
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930072 ID=FC930072; Name=FC930072; organism=Citrus clementina; type=EST; length=668bpback to top |