FC930072

Overview
NameFC930072
Unique NameFC930072
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1870 contig Ccv1_Contig1870:204..873. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACAD8_MOUSE (Isobutyryl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acad8 PE=2 SV=2)

HSP 1 Score: 62.7734 bits (151), Expect = 1.008e-17
Identity = 29/73 (39.73%), Postives = 46/73 (63.01%), Query Frame = 2
Query:  443 AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 661
            +G+KGI+  ++EKG PG S  +K  K+G     T  ++FE+C VP  N +G EG+G  + M GL+  R+ +A+
Sbjct:  208 SGAKGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGTEGQGFLIAMKGLNGGRINVAS 280          

HSP 2 Score: 48.1358 bits (113), Expect = 1.008e-17
Identity = 24/87 (27.59%), Postives = 44/87 (50.57%), Query Frame = 3
Query:  174 SYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 434
            +Y +  N+C   +   G+  Q+ K+ P L + E   +  ++EP +GSD   +   A +    YI+NG+K + + G  +   VV  +T
Sbjct:  119 AYISIHNMCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKQQGDHYILNGSKAFISGGGESDIYVVMCRT 205          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: GCDH_MACFA (Glutaryl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis GN=GCDH PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.388e-16
Identity = 35/99 (35.35%), Postives = 55/99 (55.56%), Query Frame = 3
Query:  141 EISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAK 431
            E+ R       +    S L ++ +  +GS  Q+ KYLP+L  GE +G   ++EPN+GSD   M+ +A  +  +  Y +NG K W TN P+A   VV+A+
Sbjct:  129 ELERVDSGYRSAMSVQSPLVMHPIYAYGSEEQRQKYLPRLAKGELLGCFGLTEPNSGSDPSSMETRARYNSSNKSYTLNGTKTWITNSPMADLFVVWAR 227          

HSP 2 Score: 35.4242 bits (80), Expect = 1.388e-16
Identity = 17/45 (37.78%), Postives = 25/45 (55.56%), Query Frame = 2
Query:  458 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVL 592
            I  F++EKGM G S  +   K  +R S T  ++ +   VP EN+L
Sbjct:  233 IRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENML 277          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACAD8_HUMAN (Isobutyryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACAD8 PE=1 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.806e-16
Identity = 28/72 (38.89%), Postives = 44/72 (61.11%), Query Frame = 2
Query:  446 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 661
            G KGI+  ++EKG PG S  +K  K+G     T  ++FE+C VP  N +G EG+G  + + GL+  R+ +A+
Sbjct:  211 GPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIAVRGLNGGRINIAS 282          

HSP 2 Score: 46.2098 bits (108), Expect = 1.806e-16
Identity = 23/87 (26.44%), Postives = 43/87 (49.43%), Query Frame = 3
Query:  174 SYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 434
            +Y +  N+C   +   G+  Q+ K+ P L + E   +  ++EP +GSD   +   A +    YI+NG+K + +    +   VV  +T
Sbjct:  121 AYISIHNMCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDIYVVMCRT 207          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: Y897_MYCBO (Uncharacterized protein Mb0897 OS=Mycobacterium bovis GN=fadE10 PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 6.629e-16
Identity = 37/132 (28.03%), Postives = 63/132 (47.73%), Query Frame = 3
Query:   45 KLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVR-HGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAK 431
            K +      G+  P E          +   +  ++    S+G    AH ++ + + ++  G+  QK ++LP+  +G  + A  ++EP+ GSD   M   A  +D G  Y + G K+W TNG VA  LVV A+
Sbjct:   88 KGLAELGCFGLKIPSEYGGLNMSQVAYNRVLMMVTTVHSSLGALLSAHQSIGVPEPLKLAGTAEQKRRFLPRCAAGA-ISAFLLTEPDVGSDPARMASTATPIDDGQAYELEGVKLWTTNGVVADLLVVMAR 218          

HSP 2 Score: 46.595 bits (109), Expect = 6.629e-16
Identity = 22/69 (31.88%), Postives = 40/69 (57.97%), Query Frame = 2
Query:  455 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 661
            GI+AF++E   PG +  ++   +G+RG +          VP +N++G+EG G+ + ++ L+  RL L A
Sbjct:  228 GISAFVVEADSPGITVERRNKFMGLRGIENGVTRLHRVRVPKDNLIGREGDGLKIALTTLNAGRLSLPA 296          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: Y873_MYCTU (Uncharacterized protein Rv0873/MT0896 OS=Mycobacterium tuberculosis GN=fadE10 PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 6.629e-16
Identity = 37/132 (28.03%), Postives = 63/132 (47.73%), Query Frame = 3
Query:   45 KLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVR-HGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAK 431
            K +      G+  P E          +   +  ++    S+G    AH ++ + + ++  G+  QK ++LP+  +G  + A  ++EP+ GSD   M   A  +D G  Y + G K+W TNG VA  LVV A+
Sbjct:   88 KGLAELGCFGLKIPSEYGGLNMSQVAYNRVLMMVTTVHSSLGALLSAHQSIGVPEPLKLAGTAEQKRRFLPRCAAGA-ISAFLLTEPDVGSDPARMASTATPIDDGQAYELEGVKLWTTNGVVADLLVVMAR 218          

HSP 2 Score: 46.595 bits (109), Expect = 6.629e-16
Identity = 22/69 (31.88%), Postives = 40/69 (57.97%), Query Frame = 2
Query:  455 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 661
            GI+AF++E   PG +  ++   +G+RG +          VP +N++G+EG G+ + ++ L+  RL L A
Sbjct:  228 GISAFVVEADSPGITVERRNKFMGLRGIENGVTRLHRVRVPKDNLIGREGDGLKIALTTLNAGRLSLPA 296          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: GCDH_DICDI (Glutaryl-CoA dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=gcdh PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.548e-14
Identity = 46/135 (34.07%), Postives = 68/135 (50.37%), Query Frame = 3
Query:   30 DVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVD-GGYIINGNKMWCTNGPVAQTLVVYAK 431
            D  + +  G   + G T P               A+E++     S   +    S+L ++ +   G+ AQK KYL  L SG+ VG   ++EPNAGSD  GM+ +A +   G Y++NG K W TN P+A   VV+AK
Sbjct:   82 DREIMREYGKMGMLGATIPAYGGVSHVAYGLMANAVEKVDSGYRS---AMSVQSSLVMHPINTFGTDAQKSKYLDGLASGDLVGCFGLTEPNAGSDPAGMQTRAVKNSAGNYVLNGTKTWITNSPIADVFVVWAK 213          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: GCDH_BOVIN (Glutaryl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=GCDH PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 38/99 (38.38%), Postives = 57/99 (57.58%), Query Frame = 3
Query:  141 EISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAK 431
            E+ R       +    S+L +  +  +GS  QK KYLP+L  GE +G   ++EPN GSD  GM+ +A  +     YI++G+K W TN PVA  L+V+A+
Sbjct:  129 ELERVDSGYRSAMSVQSSLVMYPIYAYGSEEQKQKYLPRLAKGELLGCFGLTEPNHGSDPSGMETRARHNPSSRSYILSGSKTWITNSPVADLLIVWAR 227          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACADL_PIG (Long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Sus scrofa GN=ACADL PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.817e-13
Identity = 40/132 (30.30%), Postives = 70/132 (53.03%), Query Frame = 3
Query:   39 LWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 434
            LW+  G   L GI   +             I  EE    S   G  +  HS++ +  +  +GS  Q   ++P++ +G+ +GA+AM+EP AGSD+ G++  A +    +I+NG+K++ TNG ++  ++V A T
Sbjct:   89 LWEKAGKQGLLGINIAERHGGIGGDLYSAAIVWEE-QAYSNCTGPGFSLHSDIVMPYIANYGSEEQIKHFIPQMTAGKCIGAIAMTEPGAGSDLQGVRTNAKKDGSDWILNGSKVFITNGWLSDVVIVVAVT 219          

HSP 2 Score: 68.1662 bits (165), Expect = 4.498e-11
Identity = 36/96 (37.50%), Postives = 54/96 (56.25%), Query Frame = 2
Query:  371 WEQDVVHQWSSCSDVGCLRKNNIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLA 658
            W  DVV        V  +     ++ + GI+ F++E GM GF   +KL K+G++  DT EL FE+  +P   +LG+E KG Y +M  L  ERL++A
Sbjct:  208 WLSDVVI-------VVAVTNREARSPAHGISLFLVENGMKGFVKGRKLHKIGLKAQDTAELFFEDVRLPASALLGEENKGFYYLMQELPQERLLIA 296          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: GCDH_CAEEL (Probable glutaryl-CoA dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=F54D5.7 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 36/100 (36.00%), Postives = 57/100 (57.00%), Query Frame = 3
Query:  141 EISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 434
            E+ R       +    ++L I  +  +GS  QK KY+P L SG+ +G   ++EPN GS+  GM+ KA  D     Y +NG+K W +N PV+  +VV+A++
Sbjct:  101 EVERVDSGYRSTMSVQTSLVIGPIYNYGSEDQKQKYIPDLASGKKIGCFGLTEPNHGSNPGGMETKATWDETTKTYKLNGSKTWISNSPVSDVMVVWARS 200          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: GCDH_HUMAN (Glutaryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=GCDH PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.385e-12
Identity = 35/99 (35.35%), Postives = 56/99 (56.57%), Query Frame = 3
Query:  141 EISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAK 431
            E+ R       +    S+L ++ +  +GS  Q+ KYLP+L  GE +G   ++EPN+GSD   M+ +A  +  +  Y +NG K W TN P+A   VV+A+
Sbjct:  129 ELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWAR 227          
The following BLAST results are available for this feature:
BLAST of FC930072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
ACAD8_MOUSE1.008e-1739.73Isobutyryl-CoA dehydrogenase, mitochondrial OS=Mus... [more]
GCDH_MACFA1.388e-1635.35Glutaryl-CoA dehydrogenase, mitochondrial OS=Macac... [more]
ACAD8_HUMAN1.806e-1638.89Isobutyryl-CoA dehydrogenase, mitochondrial OS=Hom... [more]
Y897_MYCBO6.629e-1628.03Uncharacterized protein Mb0897 OS=Mycobacterium bo... [more]
Y873_MYCTU6.629e-1628.03Uncharacterized protein Rv0873/MT0896 OS=Mycobacte... [more]
GCDH_DICDI2.548e-1434.07Glutaryl-CoA dehydrogenase, mitochondrial OS=Dicty... [more]
GCDH_BOVIN2.157e-1338.38Glutaryl-CoA dehydrogenase, mitochondrial OS=Bos t... [more]
ACADL_PIG2.817e-1330.30Long-chain specific acyl-CoA dehydrogenase, mitoch... [more]
GCDH_CAEEL4.806e-1336.00Probable glutaryl-CoA dehydrogenase, mitochondrial... [more]
GCDH_HUMAN2.385e-1235.35Glutaryl-CoA dehydrogenase, mitochondrial OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionC34003E03EF PostHarvC1 Citrus clementina cDNA clone C34003E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930072 ID=FC930072; Name=FC930072; organism=Citrus clementina; type=EST; length=668bp
TGTGATTTTGGTTGTCCCTCTTGCTACAGGATGTTAATTTATGGAAACTC
ATGGGAAATTTCAATCTCCATGGAATAACAGCTCCACAGGAATACGGAGG
GCTTGGACTTGGTTACTTGTATCATTGCATAGCAATGGAAGAAATTAGCC
GTGCGTCGGGGTCTGTTGGTCTCTCTTACGGTGCCCATTCTAATTTGTGC
ATCAATCAATTGGTGAGACATGGAAGCCCTGCTCAGAAAGACAAGTACTT
GCCCAAGCTCATTAGCGGAGAACATGTAGGTGCTCTTGCCATGAGTGAAC
CCAACGCTGGCTCTGATGTTGTTGGCATGAAATGCAAAGCTGATCGCGTA
GATGGGGGTTATATTATAAATGGGAACAAGATGTGGTGCACCAATGGTCC
AGTTGCTCAGACGTTGGTTGTTTACGCAAAAACAACATTAAAGCTGGCTC
AAAAGGAATCACAGCATTTATCATAGAGAAAGGAATGCCCGGATTCAGCA
CTGCCCAGAAGTTAGACAAGCTCGGGATGAGAGGAAGTGATACATGTGAG
CTTGTATTTGAGAATTGCTTTGTTCCAAATGAGAATGTTCTTGGGCAGGA
AGGAAAAGGAGTTTATGTTATGATGTCAGGGCTAGATTTGGAGAGGCTTG
TTTTGGCAGCTGGGCCCC
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