FC930072

Overview
NameFC930072
Unique NameFC930072
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1870 contig Ccv1_Contig1870:204..873. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: GCDH_MOUSE (Glutaryl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Gcdh PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.313e-12
Identity = 35/99 (35.35%), Postives = 55/99 (55.56%), Query Frame = 3
Query:  141 EISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAK 431
            E+ R            S+L ++ +  +GS  Q+ KYLP+L  GE +G   ++EPN GSD  GM+ +A  +  +  Y ++G K W TN PVA   +V+A+
Sbjct:  129 ELERVDSGYRSMMSVQSSLVMHPIYTYGSEEQRQKYLPRLAKGELLGCFGLTEPNHGSDPGGMETRARHNPSNQSYTLSGTKTWITNSPVADLFIVWAR 227          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: IVD_CAEEL (Probable acyl coa dehydrogenase 6 OS=Caenorhabditis elegans GN=acdh-6 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 6.939e-12
Identity = 40/134 (29.85%), Postives = 68/134 (50.75%), Query Frame = 3
Query:   39 LWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRAS-GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTT 437
            ++K++G   +  +  P +               E+I     GS+ +S    S++    L + GS + ++++L   I+G+ V ++A+SEP+AGSDV  ++  A R     IING+KMW TNG  A    V   T+
Sbjct:   62 VFKMLGQLGVFAVNKPVDYGGTGRDFAMSIAIAEQIGAVDCGSIPMSVMVQSDMSTPALAQFGSDSLRNRFLRPSINGDLVSSIAVSEPHAGSDVSAIRTHARRYGSDLIINGSKMWITNGDQADWACVLVNTS 195          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: ACDSB_BOVIN (Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=ACADSB PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.184e-11
Identity = 38/109 (34.86%), Postives = 58/109 (53.21%), Query Frame = 3
Query:  129 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTTLKLAQK 455
            + +EE+++   SV L     + L    + ++G+  QK  YLPKL + E   ++ +SE  AGSD   MK +AD+    YIING+KMW ++  +A   VV A        K
Sbjct:  123 LVIEELAKVDASVALVCDIQNTLINRMIGKYGTEEQKATYLPKLAT-EKASSICISETGAGSDSFAMKTRADKKGDYYIINGSKMWISSAEIAGLFVVMANADFSAGYK 230          
BLAST of FC930072 vs. ExPASy Swiss-Prot
Match: BBSG_THAAR ((R)-benzylsuccinyl-CoA dehydrogenase OS=Thauera aromatica GN=bbsG PE=1 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 3.953e-11
Identity = 25/55 (45.45%), Postives = 38/55 (69.09%), Query Frame = 3
Query:  222 GSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMW 386
            GSPAQ+DKY+ +   GE   A+  +EP AGSD+ G+   A R +G ++ING+K++
Sbjct:  117 GSPAQRDKYVRRYCRGEIDSAMMATEPGAGSDISGLTTTAVRENGQWVINGSKIF 171          

HSP 2 Score: 33.8834 bits (76), Expect = 3.953e-11
Identity = 23/82 (28.05%), Postives = 40/82 (48.78%), Query Frame = 2
Query:  419 CLRKNNIKAGSKG-ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAA 661
            C+   + +A +K   TAFI++K  PG     ++  +G     T  +  +N  V +E VLG+ G     + +   + R+ LAA
Sbjct:  184 CIAVTDKEAPTKRRFTAFILDKDTPGLRIGAEIPVIG--AMPTWSVYLDNVRVGDEAVLGEVGDAFIPLQNRFGVRRIELAA 263          
The following BLAST results are available for this feature:
BLAST of FC930072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
GCDH_MOUSE5.313e-1235.35Glutaryl-CoA dehydrogenase, mitochondrial OS=Mus m... [more]
IVD_CAEEL6.939e-1229.85Probable acyl coa dehydrogenase 6 OS=Caenorhabditi... [more]
ACDSB_BOVIN1.184e-1134.86Short/branched chain specific acyl-CoA dehydrogena... [more]
BBSG_THAAR3.953e-1145.45(R)-benzylsuccinyl-CoA dehydrogenase OS=Thauera ar... [more]

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Properties
Property NameValue
Genbank descriptionC34003E03EF PostHarvC1 Citrus clementina cDNA clone C34003E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930072 ID=FC930072; Name=FC930072; organism=Citrus clementina; type=EST; length=668bp
TGTGATTTTGGTTGTCCCTCTTGCTACAGGATGTTAATTTATGGAAACTC
ATGGGAAATTTCAATCTCCATGGAATAACAGCTCCACAGGAATACGGAGG
GCTTGGACTTGGTTACTTGTATCATTGCATAGCAATGGAAGAAATTAGCC
GTGCGTCGGGGTCTGTTGGTCTCTCTTACGGTGCCCATTCTAATTTGTGC
ATCAATCAATTGGTGAGACATGGAAGCCCTGCTCAGAAAGACAAGTACTT
GCCCAAGCTCATTAGCGGAGAACATGTAGGTGCTCTTGCCATGAGTGAAC
CCAACGCTGGCTCTGATGTTGTTGGCATGAAATGCAAAGCTGATCGCGTA
GATGGGGGTTATATTATAAATGGGAACAAGATGTGGTGCACCAATGGTCC
AGTTGCTCAGACGTTGGTTGTTTACGCAAAAACAACATTAAAGCTGGCTC
AAAAGGAATCACAGCATTTATCATAGAGAAAGGAATGCCCGGATTCAGCA
CTGCCCAGAAGTTAGACAAGCTCGGGATGAGAGGAAGTGATACATGTGAG
CTTGTATTTGAGAATTGCTTTGTTCCAAATGAGAATGTTCTTGGGCAGGA
AGGAAAAGGAGTTTATGTTATGATGTCAGGGCTAGATTTGGAGAGGCTTG
TTTTGGCAGCTGGGCCCC
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