FC930073

Overview
NameFC930073
Unique NameFC930073
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LA2M_MYCSM (Lactate 2-monooxygenase OS=Mycobacterium smegmatis PE=1 SV=3)

HSP 1 Score: 62.7734 bits (151), Expect = 6.062e-13
Identity = 38/130 (29.23%), Postives = 66/130 (50.77%), Query Frame = 2
Query:   83 PVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLA--NPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYHYMY 466
            P++  +++  A+ ALP     + AGG+ DEHT + NVEAF      PR+L+  +  DLS  +     +AP+  AP     L   +  G+ A+A+A+A      + S  + S++E++   +     Y  +Y
Sbjct:   24 PMSYADWEAHAQQALPPGVLSYVAGGSGDEHTQRANVEAFKHWGLMPRMLMAATERDLSVELWGKTWAAPMFFAPIGVIALCAQDGHGDAASAQASARTGVPYITSTLAVSSLEDIRKHAGDTPAYFQLY 153          

HSP 2 Score: 31.9574 bits (71), Expect = 6.062e-13
Identity = 15/40 (37.50%), Postives = 23/40 (57.50%), Query Frame = 1
Query:  460 YVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADI 579
            Y  + RD+  + ++RAE  G+  LV+T DT   G R  D+
Sbjct:  153 YYPEDRDLAESFIRRAEEAGYDGLVITLDTWIFGWRPRDL 192          
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_PSEU2 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas syringae pv. syringae (strain B728a) GN=lldD PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.852e-13
Identity = 43/124 (34.68%), Postives = 68/124 (54.84%), Query Frame = 2
Query:   95 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSN-AVRFYHYM 463
            ++++  A+  LP+  +D+  GGA  EHTL+ N      I+ R R+L +V  + L T +    ++ PII++P     +    GEV  ARAAA+      LS  S  +IEEVA+ S+ A+ F  Y+
Sbjct:    7 SDYRAAAKRKLPRFLFDYIDGGAYAEHTLRANGSDLADISLRQRVLKNVDNVSLETRLFGESLAMPIILSPVGLSGMYARRGEVQVARAAANKRIPFCLSTVSVCSIEEVASQSDQAIWFQLYV 130          
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_XANP2 (L-lactate dehydrogenase [cytochrome] OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=lldD PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 41/110 (37.27%), Postives = 59/110 (53.64%), Query Frame = 2
Query:   95 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEV 424
            ++++E AR  LP   + +  GGA  E TL+ NVE    +  R R+L  V  +DLSTT+L  ++S P+ +AP     +    GEV  A+AA        LS  S  +IEEV
Sbjct:    7 SDYREAARRRLPPFLFHYIDGGAYAEATLRRNVEDLSDLALRQRVLKSVGEVDLSTTLLKQQLSMPVGLAPVGLTGMYARRGEVQAAQAATQKGIPFTLSTVSVCSIEEV 116          
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_PSEPG (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas putida (strain GB-1) GN=lldD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.801e-12
Identity = 40/110 (36.36%), Postives = 58/110 (52.73%), Query Frame = 2
Query:   98 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA 427
            +++  A+  LP   + +  GGA  EHTL+ NV     I  R R+L ++S + LST + D  +S P+ +AP     +    GEV  ARAAA+      +S  S   IEEVA
Sbjct:    8 DYRAAAQRKLPPFLFHYADGGAYAEHTLRHNVSDLASIALRQRVLNNMSELSLSTRLFDETLSMPVALAPVGLTGMYARRGEVQAARAAAAHGIPFTMSTVSVCPIEEVA 117          
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_PSEMY (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas mendocina (strain ymp) GN=lldD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.801e-12
Identity = 41/110 (37.27%), Postives = 58/110 (52.73%), Query Frame = 2
Query:   98 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA 427
            +++  A   LP   + +  GGA  EHTL+ NV     I  R R+L ++S +DLST +   K+S P+ +AP     +    GEV  A+AAA+      LS  S   IEEVA
Sbjct:    8 DYRAAAERKLPPFLFHYADGGAYAEHTLRRNVADLSNIELRQRVLKNMSELDLSTELFGEKMSMPVGLAPVGLTGMYARRGEVQAAKAAAAKGIPFTLSTVSVCPIEEVA 117          
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_SHISS (L-lactate dehydrogenase [cytochrome] OS=Shigella sonnei (strain Ss046) GN=lldD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 2
Query:   95 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA 427
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP     +    GEV  A+AA +      LS  S   IEEVA
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVA 117          
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_SHIFL (L-lactate dehydrogenase [cytochrome] OS=Shigella flexneri GN=lldD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 2
Query:   95 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA 427
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP     +    GEV  A+AA +      LS  S   IEEVA
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVA 117          
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_SHIF8 (L-lactate dehydrogenase [cytochrome] OS=Shigella flexneri serotype 5b (strain 8401) GN=lldD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 2
Query:   95 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA 427
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP     +    GEV  A+AA +      LS  S   IEEVA
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVA 117          
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_SHIDS (L-lactate dehydrogenase [cytochrome] OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=lldD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 2
Query:   95 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA 427
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP     +    GEV  A+AA +      LS  S   IEEVA
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVA 117          
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_SHIBS (L-lactate dehydrogenase [cytochrome] OS=Shigella boydii serotype 4 (strain Sb227) GN=lldD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 2
Query:   95 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA 427
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP     +    GEV  A+AA +      LS  S   IEEVA
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADTHGIPFTLSTVSVCPIEEVA 117          
The following BLAST results are available for this feature:
BLAST of FC930073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
LA2M_MYCSM6.062e-1329.23Lactate 2-monooxygenase OS=Mycobacterium smegmatis... [more]
LLDD_PSEU26.852e-1334.68L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_XANP21.526e-1237.27L-lactate dehydrogenase [cytochrome] OS=Xanthobact... [more]
LLDD_PSEPG5.801e-1236.36L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEMY5.801e-1237.27L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_SHISS7.576e-1235.14L-lactate dehydrogenase [cytochrome] OS=Shigella s... [more]
LLDD_SHIFL7.576e-1235.14L-lactate dehydrogenase [cytochrome] OS=Shigella f... [more]
LLDD_SHIF87.576e-1235.14L-lactate dehydrogenase [cytochrome] OS=Shigella f... [more]
LLDD_SHIDS7.576e-1235.14L-lactate dehydrogenase [cytochrome] OS=Shigella d... [more]
LLDD_SHIBS7.576e-1235.14L-lactate dehydrogenase [cytochrome] OS=Shigella b... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34003E04EF PostHarvC1 Citrus clementina cDNA clone C34003E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930073 ID=FC930073; Name=FC930073; organism=Citrus clementina; type=EST; length=697bp
GGACTCACTGTTGTAATCTGCTTCACGATCGACCTTCATCAGTTGAAATT
TTTAGTCATTCGGGTTTCACATGGCAGCTGAACCTGTTAATTTGAATGAG
TTCCAAGAATTGGCAAGGCTGGCCCTTCCAAAAATGTATTATGATTTCTA
CGCTGGTGGAGCAGAAGATGAACATACCCTAAAAGAGAATGTGGAAGCCT
TTCATAGAATTACGTTTCGGCCAAGAATTCTTGTCGATGTCAGCAGAATA
GATTTATCGACTACTATACTTGATTACAAAATCTCGGCTCCCATTATCAT
TGCTCCAACGGCTTTCCATAGGCTTGCAAACCCTGAAGGAGAAGTAGCCA
CAGCCAGAGCAGCAGCTTCATGTAACACCATAATGGTTTTATCCTTCACA
TCTAGCAGCACCATAGAGGAGGTTGCGGCCAGCTCCAATGCTGTTCGCTT
CTATCATTATATGTATTCAAGAAACGAGATATAACAGCTACTCTAGTGCA
GAGAGCTGAAAGGAATGGTTTTAAGGCTCTTGTCCTAACTGCTGATACTC
CAAGACTTGGTAGAAGGGAGGCAGATATAAAGAACAAAATGATTACACCG
CCGTTGAAGAATTTGGAAGGCCTCTTATCAACCAAAGTCAGCTCTGATAC
AGGTTCGAATTTTGAAGCTGATGCCNATGAGACCATGGATGCTTCTT
back to top