FC930073

Overview
NameFC930073
Unique NameFC930073
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_ECODH (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain K12 / DH10B) GN=lldD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 2 
Query:   95 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA 427
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP     +    GEV  A+AA +      LS  S   IEEVA
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVA 117
[Close]
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_ECOBW (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain K12 / BW2952) GN=lldD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 2 
Query:   95 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA 427
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP     +    GEV  A+AA +      LS  S   IEEVA
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVA 117
[Close]
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_ECO8A (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O8 (strain IAI1) GN=lldD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 2 
Query:   95 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA 427
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP     +    GEV  A+AA +      LS  S   IEEVA
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVA 117
[Close]
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_ECO5E (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 2 
Query:   95 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA 427
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP     +    GEV  A+AA +      LS  S   IEEVA
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVA 117
[Close]
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_ECO57 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O157:H7 GN=lldD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 2 
Query:   95 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA 427
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP     +    GEV  A+AA +      LS  S   IEEVA
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVA 117
[Close]
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_ECO55 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain 55989 / EAEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 2 
Query:   95 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA 427
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP     +    GEV  A+AA +      LS  S   IEEVA
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVA 117
[Close]
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_ECO24 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 2 
Query:   95 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA 427
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP     +    GEV  A+AA +      LS  S   IEEVA
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVA 117
[Close]
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_CHRSD (L-lactate dehydrogenase [cytochrome] OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=lldD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 40/112 (35.71%), Postives = 58/112 (51.79%), Query Frame = 2 
Query:   98 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAAS 433
            +++  A+  LP   + +  GGA  EHTL+ NVE    I  R R+L D+S + L T +    ++ P+ +AP     +    GEV  ARAAAS      LS  S   I EVA++
Sbjct:    8 DYRHAAKRRLPPFLFHYADGGAYAEHTLRRNVEDLAGIALRQRVLKDMSHLSLETELFGEPLAMPVALAPVGLAGMYARRGEVQAARAAASKGIPFTLSTVSVCPIAEVASA 119
[Close]
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_PSEAE (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa GN=lldD PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 39/110 (35.45%), Postives = 58/110 (52.73%), Query Frame = 2 
Query:   98 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA 427
            +++  A+  LP   + +  GGA  E+TL+ NVE    I  R R+L ++S + L T + D  ++ P+ +AP     +    GEV  ARAAA+      LS  S   IEEVA
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYAEYTLRRNVEDLSAIALRQRVLKNMSELSLETRLFDETLAMPVALAPVGLTGMYARRGEVQAARAAAAKGVPFTLSTVSVCPIEEVA 117
[Close]
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_PSEAB (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=lldD PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 39/110 (35.45%), Postives = 58/110 (52.73%), Query Frame = 2 
Query:   98 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA 427
            +++  A+  LP   + +  GGA  E+TL+ NVE    I  R R+L ++S + L T + D  ++ P+ +AP     +    GEV  ARAAA+      LS  S   IEEVA
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYAEYTLRRNVEDLSAIALRQRVLKNMSELSLETRLFDETLAMPVALAPVGLTGMYARRGEVQAARAAAAKGVPFTLSTVSVCPIEEVA 117
The following BLAST results are available for this feature:
BLAST of FC930073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
LLDD_ECODH7.576e-1235.14L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECOBW7.576e-1235.14L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECO8A7.576e-1235.14L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECO5E7.576e-1235.14L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECO577.576e-1235.14L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECO557.576e-1235.14L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECO247.576e-1235.14L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_CHRSD7.576e-1235.71L-lactate dehydrogenase [cytochrome] OS=Chromohalo... [more]
LLDD_PSEAE9.894e-1235.45L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEAB9.894e-1235.45L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]

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Properties
Property NameValue
Genbank descriptionC34003E04EF PostHarvC1 Citrus clementina cDNA clone C34003E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930073 ID=FC930073; Name=FC930073; organism=Citrus clementina; type=EST; length=697bp
GGACTCACTGTTGTAATCTGCTTCACGATCGACCTTCATCAGTTGAAATT
TTTAGTCATTCGGGTTTCACATGGCAGCTGAACCTGTTAATTTGAATGAG
TTCCAAGAATTGGCAAGGCTGGCCCTTCCAAAAATGTATTATGATTTCTA
CGCTGGTGGAGCAGAAGATGAACATACCCTAAAAGAGAATGTGGAAGCCT
TTCATAGAATTACGTTTCGGCCAAGAATTCTTGTCGATGTCAGCAGAATA
GATTTATCGACTACTATACTTGATTACAAAATCTCGGCTCCCATTATCAT
TGCTCCAACGGCTTTCCATAGGCTTGCAAACCCTGAAGGAGAAGTAGCCA
CAGCCAGAGCAGCAGCTTCATGTAACACCATAATGGTTTTATCCTTCACA
TCTAGCAGCACCATAGAGGAGGTTGCGGCCAGCTCCAATGCTGTTCGCTT
CTATCATTATATGTATTCAAGAAACGAGATATAACAGCTACTCTAGTGCA
GAGAGCTGAAAGGAATGGTTTTAAGGCTCTTGTCCTAACTGCTGATACTC
CAAGACTTGGTAGAAGGGAGGCAGATATAAAGAACAAAATGATTACACCG
CCGTTGAAGAATTTGGAAGGCCTCTTATCAACCAAAGTCAGCTCTGATAC
AGGTTCGAATTTTGAAGCTGATGCCNATGAGACCATGGATGCTTCTT
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