FC930073

Overview
NameFC930073
Unique NameFC930073
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_PSEA8 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa (strain LESB58) GN=lldD PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 39/110 (35.45%), Postives = 58/110 (52.73%), Query Frame = 2 
Query:   98 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA 427
            +++  A+  LP   + +  GGA  E+TL+ NVE    I  R R+L ++S + L T + D  ++ P+ +AP     +    GEV  ARAAA+      LS  S   IEEVA
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYAEYTLRRNVEDLSAIALRQRVLKNMSELSLETRLFDETLAMPVALAPVGLTGMYARRGEVQAARAAAAKGVPFTLSTVSVCPIEEVA 117
[Close]
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_PSEA7 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa (strain PA7) GN=lldD PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 39/110 (35.45%), Postives = 58/110 (52.73%), Query Frame = 2 
Query:   98 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA 427
            +++  A+  LP   + +  GGA  E+TL+ NVE    I  R R+L ++S + L T + D  ++ P+ +AP     +    GEV  ARAAA+      LS  S   IEEVA
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYAEYTLRRNVEDLSAIALRQRVLKNMSELSLETRLFDETLAMPVALAPVGLTGMYARRGEVQAARAAAAKGVPFTLSTVSVCPIEEVA 117
[Close]
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_ACIBY (L-lactate dehydrogenase [cytochrome] OS=Acinetobacter baumannii (strain AYE) GN=lldD PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 41/127 (32.28%), Postives = 62/127 (48.82%), Query Frame = 2 
Query:   95 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYHYMYSRN 475
            N+++  A+  LP   + +  GGA  E+TLK NV+    I  R R+L D+S + L T + +  +S P+ +AP     +    GEV  A AA        LS  S   IEEVA + N   ++     R+
Sbjct:    7 NDYRAAAQRRLPPFLFHYIDGGAYAEYTLKRNVQDLSEIALRQRVLNDMSALSLETKLFNETLSMPVALAPVGLTGMYARRGEVQAAMAADKKGIPFTLSTVSVCPIEEVAPAINRPMWFQLYVLRD 133
[Close]
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_ACIBT (L-lactate dehydrogenase [cytochrome] OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=lldD PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 41/127 (32.28%), Postives = 62/127 (48.82%), Query Frame = 2 
Query:   95 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYHYMYSRN 475
            N+++  A+  LP   + +  GGA  E+TLK NV+    I  R R+L D+S + L T + +  +S P+ +AP     +    GEV  A AA        LS  S   IEEVA + N   ++     R+
Sbjct:    7 NDYRAAAQRRLPPFLFHYIDGGAYAEYTLKRNVQDLSEIALRQRVLNDMSALSLETKLFNETLSMPVALAPVGLTGMYARRGEVQAAMAADKKGIPFTLSTVSVCPIEEVAPAINRPMWFQLYVLRD 133
[Close]
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_ACIBS (L-lactate dehydrogenase [cytochrome] OS=Acinetobacter baumannii (strain SDF) GN=lldD PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 41/127 (32.28%), Postives = 62/127 (48.82%), Query Frame = 2 
Query:   95 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYHYMYSRN 475
            N+++  A+  LP   + +  GGA  E+TLK NV+    I  R R+L D+S + L T + +  +S P+ +AP     +    GEV  A AA        LS  S   IEEVA + N   ++     R+
Sbjct:    7 NDYRAAAQRRLPPFLFHYIDGGAYAEYTLKRNVQDLSEIALRQRVLNDMSALSLETKLFNETLSMPVALAPVGLTGMYARRGEVQAAMAADKKGIPFTLSTVSVCPIEEVAPAINRPMWFQLYVLRD 133
[Close]
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_ACIBC (L-lactate dehydrogenase [cytochrome] OS=Acinetobacter baumannii (strain ACICU) GN=lldD PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 41/127 (32.28%), Postives = 62/127 (48.82%), Query Frame = 2 
Query:   95 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYHYMYSRN 475
            N+++  A+  LP   + +  GGA  E+TLK NV+    I  R R+L D+S + L T + +  +S P+ +AP     +    GEV  A AA        LS  S   IEEVA + N   ++     R+
Sbjct:    7 NDYRAAAQRRLPPFLFHYIDGGAYAEYTLKRNVQDLSEIALRQRVLNDMSALSLETKLFNETLSMPVALAPVGLTGMYARRGEVQAAMAADKKGIPFTLSTVSVCPIEEVAPAINRPMWFQLYVLRD 133
[Close]
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_ACIB5 (L-lactate dehydrogenase [cytochrome] OS=Acinetobacter baumannii (strain AB0057) GN=lldD PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 41/127 (32.28%), Postives = 62/127 (48.82%), Query Frame = 2 
Query:   95 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYHYMYSRN 475
            N+++  A+  LP   + +  GGA  E+TLK NV+    I  R R+L D+S + L T + +  +S P+ +AP     +    GEV  A AA        LS  S   IEEVA + N   ++     R+
Sbjct:    7 NDYRAAAQRRLPPFLFHYIDGGAYAEYTLKRNVQDLSEIALRQRVLNDMSALSLETKLFNETLSMPVALAPVGLTGMYARRGEVQAAMAADKKGIPFTLSTVSVCPIEEVAPAINRPMWFQLYVLRD 133
[Close]
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_ACIB3 (L-lactate dehydrogenase [cytochrome] OS=Acinetobacter baumannii (strain AB307-0294) GN=lldD PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 41/127 (32.28%), Postives = 62/127 (48.82%), Query Frame = 2 
Query:   95 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYHYMYSRN 475
            N+++  A+  LP   + +  GGA  E+TLK NV+    I  R R+L D+S + L T + +  +S P+ +AP     +    GEV  A AA        LS  S   IEEVA + N   ++     R+
Sbjct:    7 NDYRAAAQRRLPPFLFHYIDGGAYAEYTLKRNVQDLSEIALRQRVLNDMSALSLETKLFNETLSMPVALAPVGLTGMYARRGEVQAAMAADKKGIPFTLSTVSVCPIEEVAPAINRPMWFQLYVLRD 133
[Close]
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_PSEPW (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas putida (strain W619) GN=lldD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 39/110 (35.45%), Postives = 57/110 (51.82%), Query Frame = 2 
Query:   98 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA 427
            +++  A+  LP   + +  GGA  EHTL+ NV     I  R R+L ++S + L T + D  +S P+ +AP     +    GEV  ARAAA+      +S  S   IEEVA
Sbjct:    8 DYRAAAQRKLPPFLFHYADGGAYAEHTLRHNVSDLAGIALRQRVLKNMSELSLETRLFDETLSMPVALAPVGLTGMYARRGEVQAARAAAAHGIPFTMSTVSVCPIEEVA 117
[Close]
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_ALCFA (L-lactate dehydrogenase [cytochrome] OS=Alcaligenes faecalis GN=lldD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11
Identity = 37/110 (33.64%), Postives = 58/110 (52.73%), Query Frame = 2 
Query:   98 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA 427
            +++  A+  LP   + +  GGA  EHTL+ NV+    +  R R+L D+S++D S  +   K+S P+ ++P     +    GEV  ARAA +      +S  S   IEEVA
Sbjct:    8 DYRRAAQKRLPPFLFHYIDGGAYAEHTLRRNVDDLAEVALRQRVLKDMSQLDTSIDLFGEKLSMPVALSPVGLTGMYARRGEVQAARAADARGIPFTMSSVSVCPIEEVA 117
The following BLAST results are available for this feature:
BLAST of FC930073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
LLDD_PSEA89.894e-1235.45L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEA79.894e-1235.45L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_ACIBY1.292e-1132.28L-lactate dehydrogenase [cytochrome] OS=Acinetobac... [more]
LLDD_ACIBT1.292e-1132.28L-lactate dehydrogenase [cytochrome] OS=Acinetobac... [more]
LLDD_ACIBS1.292e-1132.28L-lactate dehydrogenase [cytochrome] OS=Acinetobac... [more]
LLDD_ACIBC1.292e-1132.28L-lactate dehydrogenase [cytochrome] OS=Acinetobac... [more]
LLDD_ACIB51.292e-1132.28L-lactate dehydrogenase [cytochrome] OS=Acinetobac... [more]
LLDD_ACIB31.292e-1132.28L-lactate dehydrogenase [cytochrome] OS=Acinetobac... [more]
LLDD_PSEPW1.688e-1135.45L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_ALCFA1.688e-1133.64L-lactate dehydrogenase [cytochrome] OS=Alcaligene... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34003E04EF PostHarvC1 Citrus clementina cDNA clone C34003E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930073 ID=FC930073; Name=FC930073; organism=Citrus clementina; type=EST; length=697bp
GGACTCACTGTTGTAATCTGCTTCACGATCGACCTTCATCAGTTGAAATT
TTTAGTCATTCGGGTTTCACATGGCAGCTGAACCTGTTAATTTGAATGAG
TTCCAAGAATTGGCAAGGCTGGCCCTTCCAAAAATGTATTATGATTTCTA
CGCTGGTGGAGCAGAAGATGAACATACCCTAAAAGAGAATGTGGAAGCCT
TTCATAGAATTACGTTTCGGCCAAGAATTCTTGTCGATGTCAGCAGAATA
GATTTATCGACTACTATACTTGATTACAAAATCTCGGCTCCCATTATCAT
TGCTCCAACGGCTTTCCATAGGCTTGCAAACCCTGAAGGAGAAGTAGCCA
CAGCCAGAGCAGCAGCTTCATGTAACACCATAATGGTTTTATCCTTCACA
TCTAGCAGCACCATAGAGGAGGTTGCGGCCAGCTCCAATGCTGTTCGCTT
CTATCATTATATGTATTCAAGAAACGAGATATAACAGCTACTCTAGTGCA
GAGAGCTGAAAGGAATGGTTTTAAGGCTCTTGTCCTAACTGCTGATACTC
CAAGACTTGGTAGAAGGGAGGCAGATATAAAGAACAAAATGATTACACCG
CCGTTGAAGAATTTGGAAGGCCTCTTATCAACCAAAGTCAGCTCTGATAC
AGGTTCGAATTTTGAAGCTGATGCCNATGAGACCATGGATGCTTCTT
back to top