FC930073

Overview
NameFC930073
Unique NameFC930073
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_PSEE4 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas entomophila (strain L48) GN=lldD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 39/110 (35.45%), Postives = 57/110 (51.82%), Query Frame = 2 
Query:   98 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA 427
            +++  A+  LP   + +  GGA  EHTL+ NV     I  R R+L ++S + L T + D  +S P+ +AP     +    GEV  ARAAA+      +S  S   IEEVA
Sbjct:    8 DYRAAAQRKLPPFLFHYADGGAYAEHTLRHNVSDLASIALRQRVLKNMSDLSLETRLFDETLSMPVALAPVGLTGMYARRGEVQAARAAAAHGIPFTMSTVSVCPIEEVA 117
[Close]
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_ECOUT (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain UTI89 / UPEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 38/111 (34.23%), Postives = 59/111 (53.15%), Query Frame = 2 
Query:   95 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA 427
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ + P     +    GEV  A+AA +      LS  S   IEEVA
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALGPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVA 117
[Close]
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_ECOL6 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O6 GN=lldD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 38/111 (34.23%), Postives = 59/111 (53.15%), Query Frame = 2 
Query:   95 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA 427
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ + P     +    GEV  A+AA +      LS  S   IEEVA
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALGPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVA 117
[Close]
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_ECOL5 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 38/111 (34.23%), Postives = 59/111 (53.15%), Query Frame = 2 
Query:   95 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA 427
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ + P     +    GEV  A+AA +      LS  S   IEEVA
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALGPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVA 117
[Close]
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_ECOK1 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O1:K1 / APEC GN=lldD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 38/111 (34.23%), Postives = 59/111 (53.15%), Query Frame = 2 
Query:   95 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA 427
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ + P     +    GEV  A+AA +      LS  S   IEEVA
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALGPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVA 117
[Close]
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_ECO81 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O81 (strain ED1a) GN=lldD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 38/111 (34.23%), Postives = 59/111 (53.15%), Query Frame = 2 
Query:   95 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA 427
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ + P     +    GEV  A+AA +      LS  S   IEEVA
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALGPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVA 117
[Close]
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_ECO7I (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 38/111 (34.23%), Postives = 59/111 (53.15%), Query Frame = 2 
Query:   95 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA 427
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ + P     +    GEV  A+AA +      LS  S   IEEVA
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALGPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVA 117
[Close]
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_ECO45 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 38/111 (34.23%), Postives = 59/111 (53.15%), Query Frame = 2 
Query:   95 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA 427
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ + P     +    GEV  A+AA +      LS  S   IEEVA
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALGPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVA 117
[Close]
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_SERP5 (L-lactate dehydrogenase [cytochrome] OS=Serratia proteamaculans (strain 568) GN=lldD PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 39/110 (35.45%), Postives = 57/110 (51.82%), Query Frame = 2 
Query:   98 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA 427
            +++  A+  LP   + +  GGA  EHTL+ N E    I  R RIL ++S + L T++   K++ P+I+ P     +    GEV  A+AAA       LS  S   IEEVA
Sbjct:    8 DYRAAAQAKLPPFLFHYIDGGAYAEHTLRRNTEDLAGIALRQRILRNMSDLSLETSLFGEKLAMPVILGPVGLTGMYARRGEVQAAKAAAQKGIPFTLSTVSVCPIEEVA 117
[Close]
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_ESCF3 (L-lactate dehydrogenase [cytochrome] OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=lldD PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 38/111 (34.23%), Postives = 60/111 (54.05%), Query Frame = 2 
Query:   95 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA 427
            ++++  A+  LP   + +  GGA  E+TL+ NVE   ++  R R+L ++S + L TT+ + K+S P+ +AP     +    GEV  A AA +      LS  S   IEEVA
Sbjct:    7 SDYRAAAQRILPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAGAADAHGIPFTLSTVSVCPIEEVA 117
The following BLAST results are available for this feature:
BLAST of FC930073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
LLDD_PSEE42.204e-1135.45L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_ECOUT2.204e-1134.23L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECOL62.204e-1134.23L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECOL52.204e-1134.23L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECOK12.204e-1134.23L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECO812.204e-1134.23L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECO7I2.204e-1134.23L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECO452.204e-1134.23L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_SERP52.879e-1135.45L-lactate dehydrogenase [cytochrome] OS=Serratia p... [more]
LLDD_ESCF33.760e-1134.23L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]

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Properties
Property NameValue
Genbank descriptionC34003E04EF PostHarvC1 Citrus clementina cDNA clone C34003E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930073 ID=FC930073; Name=FC930073; organism=Citrus clementina; type=EST; length=697bp
GGACTCACTGTTGTAATCTGCTTCACGATCGACCTTCATCAGTTGAAATT
TTTAGTCATTCGGGTTTCACATGGCAGCTGAACCTGTTAATTTGAATGAG
TTCCAAGAATTGGCAAGGCTGGCCCTTCCAAAAATGTATTATGATTTCTA
CGCTGGTGGAGCAGAAGATGAACATACCCTAAAAGAGAATGTGGAAGCCT
TTCATAGAATTACGTTTCGGCCAAGAATTCTTGTCGATGTCAGCAGAATA
GATTTATCGACTACTATACTTGATTACAAAATCTCGGCTCCCATTATCAT
TGCTCCAACGGCTTTCCATAGGCTTGCAAACCCTGAAGGAGAAGTAGCCA
CAGCCAGAGCAGCAGCTTCATGTAACACCATAATGGTTTTATCCTTCACA
TCTAGCAGCACCATAGAGGAGGTTGCGGCCAGCTCCAATGCTGTTCGCTT
CTATCATTATATGTATTCAAGAAACGAGATATAACAGCTACTCTAGTGCA
GAGAGCTGAAAGGAATGGTTTTAAGGCTCTTGTCCTAACTGCTGATACTC
CAAGACTTGGTAGAAGGGAGGCAGATATAAAGAACAAAATGATTACACCG
CCGTTGAAGAATTTGGAAGGCCTCTTATCAACCAAAGTCAGCTCTGATAC
AGGTTCGAATTTTGAAGCTGATGCCNATGAGACCATGGATGCTTCTT
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