FC930073

Overview
NameFC930073
Unique NameFC930073
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_ERWCT (L-lactate dehydrogenase [cytochrome] OS=Erwinia carotovora subsp. atroseptica GN=lldD PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 39/110 (35.45%), Postives = 56/110 (50.91%), Query Frame = 2
Query:   98 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA 427
            +++  A+  LP   + +  GGA  EHTL+ N      I  R RIL ++S + L T +   K++ P+++AP     +    GEV  ARAAA       LS  S   IEEVA
Sbjct:    8 DYRAAAQRRLPPFLFHYIDGGAYGEHTLRRNTADLADIALRQRILKNMSDLSLETQLFGEKLAMPVVLAPVGLTGMYARRGEVQAARAAAQKGIPFTLSTVSVCPIEEVA 117          
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_CITK8 (L-lactate dehydrogenase [cytochrome] OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=lldD PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 38/111 (34.23%), Postives = 59/111 (53.15%), Query Frame = 2
Query:   95 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA 427
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R R+L ++S + L TT+ + K+S P+ +AP     +    GEV  A AA +      LS  S   IEEVA
Sbjct:    7 SDYRAAAQRILPPFLFHYIDGGAYAEYTLRRNVEDLSEVALRQRVLKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVA 117          
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_ECO27 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 38/111 (34.23%), Postives = 58/111 (52.25%), Query Frame = 2
Query:   95 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA 427
            ++++  A+  LP   + +  GGA  E+TL  NVE    +  R RIL ++S + L TT+ + K+S P+ + P     +    GEV  A+AA +      LS  S   IEEVA
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLHRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALGPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVA 117          
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_ACIAD (L-lactate dehydrogenase [cytochrome] OS=Acinetobacter sp. (strain ADP1) GN=lldD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 38/110 (34.55%), Postives = 57/110 (51.82%), Query Frame = 2
Query:   95 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEV 424
            N+++E A+  LP   + +  GGA  E+TLK NVE   +I  R R+L D+S + L T + +  +S P+ ++P     +    GEV  A AA        +S  S   IEEV
Sbjct:    7 NDYREAAKRRLPPFLFHYIDGGAYAEYTLKRNVEDLSQIALRQRVLNDMSSLSLETKLFNETLSMPVALSPVGLTGMYARRGEVQAAVAADKKGIPFTMSTVSVCPIEEV 116          
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_XANCP (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. campestris GN=lldD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 39/111 (35.14%), Postives = 57/111 (51.35%), Query Frame = 2
Query:   95 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA 427
            ++++  A   LP   + +  GGA  EHTL+ NV     I  R R+L ++S + LST +    ++ P+ +AP     +    GEV  ARAAA+      LS  S   IEEVA
Sbjct:    7 SDYRAAAEARLPPFLFHYIDGGAYAEHTLRRNVSDLADIALRQRVLRNMSDLSLSTELFGETLAMPVALAPVGLTGMYARRGEVQAARAAAARGIPFTLSTVSVCPIEEVA 117          
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_XANCB (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. campestris (strain B100) GN=lldD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 39/111 (35.14%), Postives = 57/111 (51.35%), Query Frame = 2
Query:   95 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA 427
            ++++  A   LP   + +  GGA  EHTL+ NV     I  R R+L ++S + LST +    ++ P+ +AP     +    GEV  ARAAA+      LS  S   IEEVA
Sbjct:    7 SDYRAAAEARLPPFLFHYMDGGAYAEHTLRRNVSDLADIALRQRVLRNMSDLSLSTELFGETLAMPVALAPVGLTGMYARRGEVQAARAAAARGIPFTLSTVSVCPIEEVA 117          
BLAST of FC930073 vs. ExPASy Swiss-Prot
Match: LLDD_XANC8 (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. campestris (strain 8004) GN=lldD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 39/111 (35.14%), Postives = 57/111 (51.35%), Query Frame = 2
Query:   95 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHRLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVA 427
            ++++  A   LP   + +  GGA  EHTL+ NV     I  R R+L ++S + LST +    ++ P+ +AP     +    GEV  ARAAA+      LS  S   IEEVA
Sbjct:    7 SDYRAAAEARLPPFLFHYIDGGAYAEHTLRRNVSDLADIALRQRVLRNMSDLSLSTELFGETLAMPVALAPVGLTGMYARRGEVQAARAAAARGIPFTLSTVSVCPIEEVA 117          
The following BLAST results are available for this feature:
BLAST of FC930073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
LLDD_ERWCT3.760e-1135.45L-lactate dehydrogenase [cytochrome] OS=Erwinia ca... [more]
LLDD_CITK83.760e-1134.23L-lactate dehydrogenase [cytochrome] OS=Citrobacte... [more]
LLDD_ECO274.910e-1134.23L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ACIAD4.910e-1134.55L-lactate dehydrogenase [cytochrome] OS=Acinetobac... [more]
LLDD_XANCP6.413e-1135.14L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANCB6.413e-1135.14L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANC86.413e-1135.14L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]

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Properties
Property NameValue
Genbank descriptionC34003E04EF PostHarvC1 Citrus clementina cDNA clone C34003E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930073 ID=FC930073; Name=FC930073; organism=Citrus clementina; type=EST; length=697bp
GGACTCACTGTTGTAATCTGCTTCACGATCGACCTTCATCAGTTGAAATT
TTTAGTCATTCGGGTTTCACATGGCAGCTGAACCTGTTAATTTGAATGAG
TTCCAAGAATTGGCAAGGCTGGCCCTTCCAAAAATGTATTATGATTTCTA
CGCTGGTGGAGCAGAAGATGAACATACCCTAAAAGAGAATGTGGAAGCCT
TTCATAGAATTACGTTTCGGCCAAGAATTCTTGTCGATGTCAGCAGAATA
GATTTATCGACTACTATACTTGATTACAAAATCTCGGCTCCCATTATCAT
TGCTCCAACGGCTTTCCATAGGCTTGCAAACCCTGAAGGAGAAGTAGCCA
CAGCCAGAGCAGCAGCTTCATGTAACACCATAATGGTTTTATCCTTCACA
TCTAGCAGCACCATAGAGGAGGTTGCGGCCAGCTCCAATGCTGTTCGCTT
CTATCATTATATGTATTCAAGAAACGAGATATAACAGCTACTCTAGTGCA
GAGAGCTGAAAGGAATGGTTTTAAGGCTCTTGTCCTAACTGCTGATACTC
CAAGACTTGGTAGAAGGGAGGCAGATATAAAGAACAAAATGATTACACCG
CCGTTGAAGAATTTGGAAGGCCTCTTATCAACCAAAGTCAGCTCTGATAC
AGGTTCGAATTTTGAAGCTGATGCCNATGAGACCATGGATGCTTCTT
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