FC930079

Overview
NameFC930079
Unique NameFC930079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX4_GOSHI (Probable phospholipid hydroperoxide glutathione peroxidase OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 9.401e-53
Identity = 98/134 (73.13%), Postives = 113/134 (84.33%), Query Frame = 3
Query:  297 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE-IKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDK 695
            +S+YDFTVKD  G DV LS +KGKVL+IVNVAS+CGLT SNY++L+ +Y+KYK QG EILAFPCNQFGGQEPGS  E I+   CTRFKAE+PIFDKVDVNG N AP+Y+FLKSS GGF GD +KWNF KFLVDK
Sbjct:    9 QSIYDFTVKDAKGNDVDLSIYKGKVLIIVNVASQCGLTNSNYTDLTEIYKKYKDQGLEILAFPCNQFGGQEPGSIEESIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLKSSKGGFFGDSIKWNFSKFLVDK 142          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX3_ARATH (Probable glutathione peroxidase 3, mitochondrial OS=Arabidopsis thaliana GN=GPX3 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.228e-52
Identity = 96/132 (72.73%), Postives = 108/132 (81.82%), Query Frame = 3
Query:  300 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDK 695
            S+Y+ +VKDI+GKDV LSKF GKVLLIVNVAS+CGLT  NY E++ LY KYKTQGFEILAFPCNQFG QEPGSN EIKE  C  FKAEFPIFDK++VNG NT P+Y FLK   GG  GD +KWNF KFLVD+
Sbjct:   47 SIYNISVKDIEGKDVSLSKFTGKVLLIVNVASKCGLTHGNYKEMNILYAKYKTQGFEILAFPCNQFGSQEPGSNMEIKETVCNIFKAEFPIFDKIEVNGKNTCPLYNFLKEQKGGLFGDAIKWNFAKFLVDR 178          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX4_HELAN (Probable phospholipid hydroperoxide glutathione peroxidase OS=Helianthus annuus GN=GPXHA-2 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 6.094e-52
Identity = 95/128 (74.22%), Postives = 110/128 (85.94%), Query Frame = 3
Query:  312 FTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDK 695
            F+ KD+ G+DV LSK+KGKVLLIVNVAS+CG T SNY EL+ LY+KYK QGFEILAFPCNQFGGQEPGSN EI+ FACTRFKAE+P+F KV+VNG    P+Y+FLKSS GGFLGD +KWNF KFLVD+
Sbjct:   25 FSDKDVKGQDVELSKYKGKVLLIVNVASQCGFTNSNYPELTTLYQKYKDQGFEILAFPCNQFGGQEPGSNEEIQVFACTRFKAEYPVFSKVNVNGKEADPLYKFLKSSKGGFLGDSIKWNFTKFLVDR 152          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX2_ARATH (Probable glutathione peroxidase 2 OS=Arabidopsis thaliana GN=GPX2 PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 6.094e-52
Identity = 95/131 (72.52%), Postives = 110/131 (83.97%), Query Frame = 3
Query:  297 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLV 689
            KS+YDFTVKDI G DV L ++KGK LL+VNVAS+CGLT +NY EL+ LYEKYK QG EILAFPCNQF GQEPG+N EI++  CTRFKAEFPIFDKVDVNG NTAP+Y++LK+  GG L D +KWNF KFLV
Sbjct:    7 KSIYDFTVKDIGGNDVSLDQYKGKTLLVVNVASKCGLTDANYKELNVLYEKYKEQGLEILAFPCNQFLGQEPGNNEEIQQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLLIDAIKWNFTKFLV 137          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX1_HELAN (Glutathione peroxidase 1 OS=Helianthus annuus GN=GPXHA-1 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.560e-50
Identity = 92/133 (69.17%), Postives = 110/133 (82.71%), Query Frame = 3
Query:  297 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDK 695
            K+LYDFTVKD  G DV LS +KGKV+LIVNVAS+CGLT ++Y EL+ +Y KYK +GFEILAFPCNQFG QEPG+N EI +F CT+FK+EFPIFDK+DVNG N APVY+FLK+   G LG  ++WNF KFLVDK
Sbjct:    7 KTLYDFTVKDAKGNDVDLSVYKGKVVLIVNVASKCGLTNNSYDELNQIYLKYKEKGFEILAFPCNQFGQQEPGTNEEIVDFVCTKFKSEFPIFDKIDVNGENAAPVYEFLKTGFYGILGGDIQWNFSKFLVDK 139          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX5_ARATH (Probable glutathione peroxidase 5 OS=Arabidopsis thaliana GN=GPX5 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.519e-47
Identity = 87/133 (65.41%), Postives = 105/133 (78.95%), Query Frame = 3
Query:  297 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDK 695
            KS++ FTVKD  GK+V LS ++GKVLL+VNVAS+CG T SNY++L+ LY KYK QGF +LAFPCNQF  QEPG++ E  +FACTRFKAE+P+F KV VNG N APVY+FLKS    FLG  +KWNF KFLV K
Sbjct:   12 KSIHQFTVKDSSGKEVDLSVYQGKVLLVVNVASKCGFTESNYTQLTELYRKYKDQGFVVLAFPCNQFLSQEPGTSEEAHQFACTRFKAEYPVFQKVRVNGQNAAPVYKFLKSKKPSFLGSRIKWNFTKFLVGK 144          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX8_ARATH (Probable glutathione peroxidase 8 OS=Arabidopsis thaliana GN=GPX8 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.480e-45
Identity = 79/133 (59.40%), Postives = 108/133 (81.20%), Query Frame = 3
Query:  297 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDK 695
            +S+Y+ +++D  G ++ LS++K KVLLIVNVAS+CG+T SNY+EL+ LY +YK +G EILAFPCNQFG +EPG+N +I +F CTRFK+EFPIF+K++VNG N +P+Y+FLK    G  GD ++WNF KFLVDK
Sbjct:    7 ESVYELSIEDAKGNNLALSQYKDKVLLIVNVASKCGMTNSNYTELNELYNRYKDKGLEILAFPCNQFGDEEPGTNDQITDFVCTRFKSEFPIFNKIEVNGENASPLYKFLKKGKWGIFGDDIQWNFAKFLVDK 139          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX4_ARATH (Probable glutathione peroxidase 4 OS=Arabidopsis thaliana GN=GPX4 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.239e-45
Identity = 85/133 (63.91%), Postives = 105/133 (78.95%), Query Frame = 3
Query:  297 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDK 695
            +S++ FTVKD  GKD+ +S ++GKVLLIVNVAS+CG T +NY++L+ LY KYK Q FEILAFPCNQF  QEPG++ E  EFAC RFKAE+P+F KV VNG N AP+Y+FLK+S   FLG  +KWNF KFLV K
Sbjct:   10 RSVHQFTVKDSSGKDLNMSIYQGKVLLIVNVASKCGFTETNYTQLTELYRKYKDQDFEILAFPCNQFLYQEPGTSQEAHEFACERFKAEYPVFQKVRVNGQNAAPIYKFLKASKPTFLGSRIKWNFTKFLVGK 142          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX2_CAEEL (Probable glutathione peroxidase R05H10.5 OS=Caenorhabditis elegans GN=R05H10.5 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.402e-40
Identity = 76/132 (57.58%), Postives = 96/132 (72.73%), Query Frame = 3
Query:  300 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDK 695
            S++  TVK+  G+D PLS ++GKVL+IVNVAS+CGLT SNY++   L + YK  G E+LAFPCNQFGGQEP    +I  F   +FK E  +F K+DVNG NTAP+Y+FLK   GGFL D +KWNF KFLV +
Sbjct:    3 SVHGITVKNAQGEDTPLSNYQGKVLIIVNVASQCGLTNSNYNQFKELLDVYKKDGLEVLAFPCNQFGGQEPSCEIDIAAFVADKFKFEPTLFQKIDVNGDNTAPLYKFLKQEKGGFLVDAIKWNFTKFLVGR 134          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX1_CAEEL (Probable glutathione peroxidase F26E4.12 OS=Caenorhabditis elegans GN=F26E4.12 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.726e-39
Identity = 73/132 (55.30%), Postives = 96/132 (72.73%), Query Frame = 3
Query:  300 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDK 695
            S+YDF VK+ +G DV LS +KGKVL+IVNVAS+CGLT  NY++L  L + YK  G E+LAFPCNQF GQEP    +I+ F   +FK E  +F K+DVNG   +P+++FLK+  GGF+ D +KWNF KFLV +
Sbjct:    3 SVYDFNVKNANGDDVSLSDYKGKVLIIVNVASQCGLTNKNYTQLKELLDVYKKDGLEVLAFPCNQFAGQEPSCEIDIQAFVADKFKFEPTLFQKIDVNGDKQSPLFKFLKNEKGGFMFDAIKWNFTKFLVGR 134          
The following BLAST results are available for this feature:
BLAST of FC930079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
GPX4_GOSHI9.401e-5373.13Probable phospholipid hydroperoxide glutathione pe... [more]
GPX3_ARATH1.228e-5272.73Probable glutathione peroxidase 3, mitochondrial O... [more]
GPX4_HELAN6.094e-5274.22Probable phospholipid hydroperoxide glutathione pe... [more]
GPX2_ARATH6.094e-5272.52Probable glutathione peroxidase 2 OS=Arabidopsis t... [more]
GPX1_HELAN2.560e-5069.17Glutathione peroxidase 1 OS=Helianthus annuus GN=G... [more]
GPX5_ARATH4.519e-4765.41Probable glutathione peroxidase 5 OS=Arabidopsis t... [more]
GPX8_ARATH2.480e-4559.40Probable glutathione peroxidase 8 OS=Arabidopsis t... [more]
GPX4_ARATH3.239e-4563.91Probable glutathione peroxidase 4 OS=Arabidopsis t... [more]
GPX2_CAEEL2.402e-4057.58Probable glutathione peroxidase R05H10.5 OS=Caenor... [more]
GPX1_CAEEL7.726e-3955.30Probable glutathione peroxidase F26E4.12 OS=Caenor... [more]

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Properties
Property NameValue
Genbank descriptionC34003E10EF PostHarvC1 Citrus clementina cDNA clone C34003E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930079 ID=FC930079; Name=FC930079; organism=Citrus clementina; type=EST; length=726bp
GCTCTGTTANACAACGATTGATTCACTTAAATTCCATCTCAATGGCTTCT
TATTCGATGCCTTTCTCTGCAGCTTTCTCCTCACCTTTACGGCATTTCAC
ACAAATCAAAACATGCCCTGCTGCATGGGCTTCATCAATGGCGGCTTCAT
GGACTCCTACTAATTCAATCAAATCATCAATTGGGTCCGCTAAACCAGGC
TTTCTTCAACATGGGCTGTTTTCCCAATCTTCAAATTTGCCTGGGTTTTT
CGTGAAACGTCGTTCCTTTGGTGTTCACGCTACAGCTGCTACTTAGAAGT
CTTTATATGACTTCACCGTCAAGGATATTGATGGTAAAGATGTTCCTCTT
AGCAAGTTTAAGGGCAAAGTTCTGTTGATTGTGAATGTCGCTTCAAGATG
TGGCTTGACACCATCTAATTACTCGGAGCTCTCTCACTTATATGAGAAGT
ACAAGACTCAAGGATTTGAGATTCTAGCTTTCCCTTGCAATCAATTTGGT
GGGCAAGAGCCTGGATCAAACCCTGAGATCAAGGAATTCGCTTGTACTAG
GTTTAAGGCAGAATTTCCCATATTTGACAAGGTTGATGTAAATGGACCAA
ACACAGCTCCAGTTTACCAGTTTTTGAAGTCAAGTGCTGGGGGATTTTTA
GGCGACCTTGTCAAGTGGAACTTTGAGAAGTTCTTAGTGGACAAAATGGT
AAGTCATCGAGAGATATCCACCACTA
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