FC930079

Overview
NameFC930079
Unique NameFC930079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX3_YEAST (Peroxiredoxin HYR1 OS=Saccharomyces cerevisiae GN=HYR1 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.968e-35
Identity = 74/131 (56.49%), Postives = 88/131 (67.18%), Query Frame = 3
Query:  306 YDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLG-DLVKWNFEKFLVDK 695
            Y     D  G+  P  + KGKV+LIVNVAS+CG TP  Y EL  LY++YK +GF I+ FPCNQFG QEPGS+ EI +F    +   FPI  K+DVNG N  PVY+FLKS   G LG   +KWNFEKFLVDK
Sbjct:    5 YKLAPVDKKGQPFPFDQLKGKVVLIVNVASKCGFTPQ-YKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDK 134          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX2_YEAST (Glutathione peroxidase 2 OS=Saccharomyces cerevisiae GN=GPX2 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.769e-35
Identity = 74/132 (56.06%), Postives = 87/132 (65.91%), Query Frame = 3
Query:  300 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLG-DLVKWNFEKFLVD 692
            S YD   KD  G+     + KGKV+LIVNVAS+CG TP  Y EL  LY+KY+ +GF IL FPCNQFG QEPGS+ +I EF    +   FPI  K+DVNG N   VY +LKS   G LG   +KWNFEKFLVD
Sbjct:    4 SFYDLECKDKKGESFKFDQLKGKVVLIVNVASKCGFTPQ-YKELEELYKKYQDKGFVILGFPCNQFGKQEPGSDEQITEFCQLNYGVTFPIMKKIDVNGSNADSVYNYLKSQKAGLLGFKGIKWNFEKFLVD 134          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX1_SCHPO (Glutathione peroxidase OS=Schizosaccharomyces pombe GN=gpx1 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.840e-35
Identity = 71/130 (54.62%), Postives = 86/130 (66.15%), Query Frame = 3
Query:  306 YDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDK 695
            YD   KD DG   P S  KGKV+L+VN AS+CG TP  Y  L  LY+KYK +GF IL FPCNQFG QEPGS+ EI +F    +   FP+  K++VNG N  PVYQFLKS       + +KWNFEKFLV++
Sbjct:    5 YDLAPKDKDGNPFPFSNLKGKVVLVVNTASKCGFTPQ-YKGLEALYQKYKDRGFIILGFPCNQFGNQEPGSDEEIAQFCQKNYGVTFPVLAKINVNGDNVDPVYQFLKSQKKQLGLERIKWNFEKFLVNR 133          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPO_SYNY3 (Putative glutathione peroxidase OS=Synechocystis sp. (strain PCC 6803) GN=slr1171 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.572e-34
Identity = 73/144 (50.69%), Postives = 97/144 (67.36%), Query Frame = 3
Query:  282 TAAT*KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGG----FLG--DLVKWNFEKFLVDK 695
            TA    ++Y F+   +DG  V L  F+GKVLLIVN AS+CG TP  Y  L  LY ++  +GF +L FPCNQFG QEPG + EIK F  TR+   FP+F+KV+VNGPN  P+++FL +++ G    FLG  + +KWNF KFLVD+
Sbjct:    2 TAQANNTIYGFSANALDGSPVALRDFEGKVLLIVNTASQCGFTPQ-YQGLQALYNRFGDRGFTVLGFPCNQFGQQEPGGSGEIKNFCETRYGVTFPLFEKVEVNGPNAHPLFKFLTAASPGMAIPFLGGAEDIKWNFTKFLVDR 144          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPO_LACLA (Glutathione peroxidase OS=Lactococcus lactis subsp. lactis GN=gpo PE=3 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.730e-34
Identity = 67/132 (50.76%), Postives = 86/132 (65.15%), Query Frame = 3
Query:  300 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDK 695
            + YDF+   ++G+ V +S FKGKV+++VN AS+CG TP  +  L  LYE YK QG EIL FPCNQF  Q+ G N EI EF    +   FP+F K+ VNG    P+YQFLK  A G L   +KWNF KFL+D+
Sbjct:    2 NFYDFSAFKMNGETVSMSDFKGKVVIVVNTASKCGFTPQ-FEGLEKLYENYKDQGLEILGFPCNQFVNQDAGENSEINEFCQLNYGVTFPMFQKIKVNGKEAHPLYQFLKKEAKGALSGTIKWNFTKFLIDR 132          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX1_SCHMA (Glutathione peroxidase OS=Schistosoma mansoni GN=GPX1 PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 9.774e-34
Identity = 67/132 (50.76%), Postives = 91/132 (68.94%), Query Frame = 3
Query:  300 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDK 695
            S+Y+FTVKDI+G DV L K++G V LIVNVA + G T  NY +L  ++ +   +G  ILAFPCNQFGGQEP +  EIK+F   ++  +F +F K+ VNG +   +Y+FLKS   G L + +KWNF KFLVD+
Sbjct:   10 SIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKUGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDR 141          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPO_LACLM (Glutathione peroxidase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=gpo PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.851e-33
Identity = 65/132 (49.24%), Postives = 85/132 (64.39%), Query Frame = 3
Query:  300 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDK 695
            + YDF+   ++G+ V +S +KGKV+++VN AS+CG TP  +  L  LYE YK QG EIL FPCNQF  Q+ G N EI EF    +   F +F K+ VNG    P+YQFLK  A G L   +KWNF KFL+D+
Sbjct:    2 NFYDFSAVKMNGETVSMSDYKGKVVIVVNTASKCGFTPQ-FEGLEKLYETYKDQGLEILGFPCNQFANQDAGENTEINEFCQLNYGVTFTMFQKIKVNGKEAHPLYQFLKKEAKGALSGTIKWNFTKFLIDR 132          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: BSAA_BACHD (Glutathione peroxidase homolog bsaA OS=Bacillus halodurans GN=bsaA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.081e-32
Identity = 67/132 (50.76%), Postives = 89/132 (67.42%), Query Frame = 3
Query:  300 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDK 695
            S+++F+ + I+G++  LS +K +VLLIVN AS+CGLTP  Y EL  LYE YK QGF +L FP NQF  QEPG + EI  F    +   FPIF+KV VNG    P++Q+L S  GG   + +KWNF KFL+D+
Sbjct:    2 SIHEFSARLINGEEKALSDYKDQVLLIVNTASKCGLTPQ-YEELQILYETYKDQGFTVLGFPSNQFMNQEPGDHNEIAAFCERNYGVSFPIFEKVKVNGKEAHPLFQYLTSQQGGLFTEKIKWNFTKFLIDR 132          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: BSAA_BACSU (Glutathione peroxidase homolog bsaA OS=Bacillus subtilis GN=bsaA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.843e-32
Identity = 68/133 (51.13%), Postives = 87/133 (65.41%), Query Frame = 3
Query:  300 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLG-DLVKWNFEKFLVDK 695
            S+Y   V+ I GKD+ L  F GKVL+IVN AS+CG T S   +L  LY+ Y+ +G EIL FPCNQF  QEPG   +I+EF  T +   FP+F KVDVNG N  P++ +L   A G LG   +KWNF KF+VD+
Sbjct:    2 SIYHMKVRTITGKDMTLQPFAGKVLMIVNTASKCGFT-SQLKQLQELYDTYQQEGLEILGFPCNQFMNQEPGEEADIQEFCETNYGVTFPMFSKVDVNGKNAHPLFVYLTEHAKGMLGTKAIKWNFTKFIVDR 133          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: BSAA_STAES (Glutathione peroxidase homolog bsaA OS=Staphylococcus epidermidis (strain ATCC 12228) GN=bsaA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.407e-32
Identity = 65/133 (48.87%), Postives = 88/133 (66.17%), Query Frame = 3
Query:  297 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDK 695
            +S+YDF V+  +G+   L ++KG V+LIVN AS CG TP  +  L  LY++YK Q F IL FPCNQFGGQEPGS  E  +     +   FPI +KVDV G N  P++ FL ++A G + + +KWNF KFL+D+
Sbjct:    2 ESIYDFVVQKNNGESYKLEQYKGDVMLIVNTASECGFTPQ-FEGLQKLYDEYKDQRFIILGFPCNQFGGQEPGSGEEAAQNCKINYGVTFPIHEKVDVKGDNQHPLFHFLTNAAKGMINEKIKWNFTKFLIDR 133          
The following BLAST results are available for this feature:
BLAST of FC930079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
GPX3_YEAST3.968e-3556.49Peroxiredoxin HYR1 OS=Saccharomyces cerevisiae GN=... [more]
GPX2_YEAST6.769e-3556.06Glutathione peroxidase 2 OS=Saccharomyces cerevisi... [more]
GPX1_SCHPO8.840e-3554.62Glutathione peroxidase OS=Schizosaccharomyces pomb... [more]
GPO_SYNY32.572e-3450.69Putative glutathione peroxidase OS=Synechocystis s... [more]
GPO_LACLA5.730e-3450.76Glutathione peroxidase OS=Lactococcus lactis subsp... [more]
GPX1_SCHMA9.774e-3450.76Glutathione peroxidase OS=Schistosoma mansoni GN=G... [more]
GPO_LACLM4.851e-3349.24Glutathione peroxidase OS=Lactococcus lactis subsp... [more]
BSAA_BACHD1.081e-3250.76Glutathione peroxidase homolog bsaA OS=Bacillus ha... [more]
BSAA_BACSU1.843e-3251.13Glutathione peroxidase homolog bsaA OS=Bacillus su... [more]
BSAA_STAES2.407e-3248.87Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]

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Properties
Property NameValue
Genbank descriptionC34003E10EF PostHarvC1 Citrus clementina cDNA clone C34003E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930079 ID=FC930079; Name=FC930079; organism=Citrus clementina; type=EST; length=726bp
GCTCTGTTANACAACGATTGATTCACTTAAATTCCATCTCAATGGCTTCT
TATTCGATGCCTTTCTCTGCAGCTTTCTCCTCACCTTTACGGCATTTCAC
ACAAATCAAAACATGCCCTGCTGCATGGGCTTCATCAATGGCGGCTTCAT
GGACTCCTACTAATTCAATCAAATCATCAATTGGGTCCGCTAAACCAGGC
TTTCTTCAACATGGGCTGTTTTCCCAATCTTCAAATTTGCCTGGGTTTTT
CGTGAAACGTCGTTCCTTTGGTGTTCACGCTACAGCTGCTACTTAGAAGT
CTTTATATGACTTCACCGTCAAGGATATTGATGGTAAAGATGTTCCTCTT
AGCAAGTTTAAGGGCAAAGTTCTGTTGATTGTGAATGTCGCTTCAAGATG
TGGCTTGACACCATCTAATTACTCGGAGCTCTCTCACTTATATGAGAAGT
ACAAGACTCAAGGATTTGAGATTCTAGCTTTCCCTTGCAATCAATTTGGT
GGGCAAGAGCCTGGATCAAACCCTGAGATCAAGGAATTCGCTTGTACTAG
GTTTAAGGCAGAATTTCCCATATTTGACAAGGTTGATGTAAATGGACCAA
ACACAGCTCCAGTTTACCAGTTTTTGAAGTCAAGTGCTGGGGGATTTTTA
GGCGACCTTGTCAAGTGGAACTTTGAGAAGTTCTTAGTGGACAAAATGGT
AAGTCATCGAGAGATATCCACCACTA
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