FC930079

Overview
NameFC930079
Unique NameFC930079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX4_BOVIN (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Bos taurus GN=GPX4 PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 5.363e-32
Identity = 66/135 (48.89%), Postives = 94/135 (69.63%), Query Frame = 3 
Query:  297 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK--SSAGGFLGDLVKWNFEKFLVDK 695
            +S+++F+ KDIDG+ V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G  ILAFPCNQFG QEPGSN EIKEFA   +  +F +F K+ VNG +  P+++++K      G LG+ +KWNF KFL+DK
Sbjct:   39 RSMHEFSAKDIDGRMVNLDKYRGHVCIVTNVASQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNAEIKEFA-AGYNVKFDLFSKICVNGDDAHPLWKWMKVQPKGRGMLGNAIKWNFTKFLIDK 172
[Close]
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX4_CALJA (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Callithrix jacchus GN=GPX4 PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.038e-31
Identity = 67/135 (49.63%), Postives = 93/135 (68.89%), Query Frame = 3 
Query:  297 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK--SSAGGFLGDLVKWNFEKFLVDK 695
            +S+++F+ KDIDG  V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G  ILAFPCNQFG QEPGSN EIKEFA   +  +F +F K+ VNG +  P+++++K      G LG+ +KWNF KFLVDK
Sbjct:   39 RSMHEFSAKDIDGHTVNLDKYRGFVCIVTNVASQUGKTQVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGTLGNAIKWNFTKFLVDK 172
[Close]
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX4_PONPY (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Pongo pygmaeus GN=GPX4 PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.662e-31
Identity = 66/135 (48.89%), Postives = 93/135 (68.89%), Query Frame = 3 
Query:  297 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK--SSAGGFLGDLVKWNFEKFLVDK 695
            +S+++F+ KDIDG  V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G  ILAFPCNQFG QEPGSN EIKEFA   +  +F +F K+ VNG +  P+++++K      G LG+ +KWNF KFL+DK
Sbjct:   39 RSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDK 172
[Close]
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX4_HUMAN (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Homo sapiens GN=GPX4 PE=1 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 2.662e-31
Identity = 66/135 (48.89%), Postives = 93/135 (68.89%), Query Frame = 3 
Query:  297 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK--SSAGGFLGDLVKWNFEKFLVDK 695
            +S+++F+ KDIDG  V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G  ILAFPCNQFG QEPGSN EIKEFA   +  +F +F K+ VNG +  P+++++K      G LG+ +KWNF KFL+DK
Sbjct:   39 RSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDK 172
[Close]
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: BSAA_STAAW (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain MW2) GN=bsaA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.476e-31
Identity = 64/133 (48.12%), Postives = 85/133 (63.91%), Query Frame = 3 
Query:  297 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDK 695
            +++YDF V+   G    L  +KG V+LIVN AS CG T S +  L  LYEKYK QGF IL FPCNQFGGQEPGS  E  +     +   FP+  K+DV G +  P++++L ++  GF  + +KWNF KFLVD+
Sbjct:    2 ETIYDFVVETNKGVTYKLDAYKGDVMLIVNTASECGFT-SQFEGLQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFNEKIKWNFTKFLVDR 133
[Close]
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: BSAA_STAAS (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain MSSA476) GN=bsaA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.476e-31
Identity = 64/133 (48.12%), Postives = 85/133 (63.91%), Query Frame = 3 
Query:  297 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDK 695
            +++YDF V+   G    L  +KG V+LIVN AS CG T S +  L  LYEKYK QGF IL FPCNQFGGQEPGS  E  +     +   FP+  K+DV G +  P++++L ++  GF  + +KWNF KFLVD+
Sbjct:    2 ETIYDFVVETNKGVTYKLDAYKGDVMLIVNTASECGFT-SQFEGLQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFNEKIKWNFTKFLVDR 133
[Close]
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: BSAA_STAAR (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain MRSA252) GN=bsaA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.476e-31
Identity = 64/133 (48.12%), Postives = 85/133 (63.91%), Query Frame = 3 
Query:  297 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDK 695
            +++YDF V+   G    L  +KG V+LIVN AS CG T S +  L  LYEKYK QGF IL FPCNQFGGQEPGS  E  +     +   FP+  K+DV G +  P++++L ++  GF  + +KWNF KFLVD+
Sbjct:    2 ETIYDFVVETNKGVTYKLDAYKGDVMLIVNTASECGFT-SQFEGLQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFNEKIKWNFTKFLVDR 133
[Close]
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: BSAA_STAAN (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain N315) GN=bsaA PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.476e-31
Identity = 64/133 (48.12%), Postives = 85/133 (63.91%), Query Frame = 3 
Query:  297 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDK 695
            +++YDF V+   G    L  +KG V+LIVN AS CG T S +  L  LYEKYK QGF IL FPCNQFGGQEPGS  E  +     +   FP+  K+DV G +  P++++L ++  GF  + +KWNF KFLVD+
Sbjct:    2 ETIYDFVVETNKGVTYKLDAYKGDVMLIVNTASECGFT-SQFEGLQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFNEKIKWNFTKFLVDR 133
[Close]
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: BSAA_STAAM (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=bsaA PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.476e-31
Identity = 64/133 (48.12%), Postives = 85/133 (63.91%), Query Frame = 3 
Query:  297 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDK 695
            +++YDF V+   G    L  +KG V+LIVN AS CG T S +  L  LYEKYK QGF IL FPCNQFGGQEPGS  E  +     +   FP+  K+DV G +  P++++L ++  GF  + +KWNF KFLVD+
Sbjct:    2 ETIYDFVVETNKGVTYKLDAYKGDVMLIVNTASECGFT-SQFEGLQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFNEKIKWNFTKFLVDR 133
[Close]
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: BSAA_STAAC (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain COL) GN=bsaA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.476e-31
Identity = 64/133 (48.12%), Postives = 85/133 (63.91%), Query Frame = 3 
Query:  297 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDK 695
            +++YDF V+   G    L  +KG V+LIVN AS CG T S +  L  LYEKYK QGF IL FPCNQFGGQEPGS  E  +     +   FP+  K+DV G +  P++++L ++  GF  + +KWNF KFLVD+
Sbjct:    2 ETIYDFVVETNKGVTYKLDAYKGDVMLIVNTASECGFT-SQFEGLQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFNEKIKWNFTKFLVDR 133
The following BLAST results are available for this feature:
BLAST of FC930079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
GPX4_BOVIN5.363e-3248.89Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX4_CALJA2.038e-3149.63Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX4_PONPY2.662e-3148.89Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX4_HUMAN2.662e-3148.89Phospholipid hydroperoxide glutathione peroxidase,... [more]
BSAA_STAAW3.476e-3148.12Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
BSAA_STAAS3.476e-3148.12Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
BSAA_STAAR3.476e-3148.12Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
BSAA_STAAN3.476e-3148.12Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
BSAA_STAAM3.476e-3148.12Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
BSAA_STAAC3.476e-3148.12Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]

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Properties
Property NameValue
Genbank descriptionC34003E10EF PostHarvC1 Citrus clementina cDNA clone C34003E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930079 ID=FC930079; Name=FC930079; organism=Citrus clementina; type=EST; length=726bp
GCTCTGTTANACAACGATTGATTCACTTAAATTCCATCTCAATGGCTTCT
TATTCGATGCCTTTCTCTGCAGCTTTCTCCTCACCTTTACGGCATTTCAC
ACAAATCAAAACATGCCCTGCTGCATGGGCTTCATCAATGGCGGCTTCAT
GGACTCCTACTAATTCAATCAAATCATCAATTGGGTCCGCTAAACCAGGC
TTTCTTCAACATGGGCTGTTTTCCCAATCTTCAAATTTGCCTGGGTTTTT
CGTGAAACGTCGTTCCTTTGGTGTTCACGCTACAGCTGCTACTTAGAAGT
CTTTATATGACTTCACCGTCAAGGATATTGATGGTAAAGATGTTCCTCTT
AGCAAGTTTAAGGGCAAAGTTCTGTTGATTGTGAATGTCGCTTCAAGATG
TGGCTTGACACCATCTAATTACTCGGAGCTCTCTCACTTATATGAGAAGT
ACAAGACTCAAGGATTTGAGATTCTAGCTTTCCCTTGCAATCAATTTGGT
GGGCAAGAGCCTGGATCAAACCCTGAGATCAAGGAATTCGCTTGTACTAG
GTTTAAGGCAGAATTTCCCATATTTGACAAGGTTGATGTAAATGGACCAA
ACACAGCTCCAGTTTACCAGTTTTTGAAGTCAAGTGCTGGGGGATTTTTA
GGCGACCTTGTCAAGTGGAACTTTGAGAAGTTCTTAGTGGACAAAATGGT
AAGTCATCGAGAGATATCCACCACTA
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