FC930079

Overview
NameFC930079
Unique NameFC930079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX8_HUMAN (Probable glutathione peroxidase 8 OS=Homo sapiens GN=GPX8 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.415e-24
Identity = 58/131 (44.27%), Postives = 78/131 (59.54%), Query Frame = 3
Query:  300 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVD 692
            S Y F VKD  G+ V L K+KGKV L+VNVAS C LT  NY  L  L++++    F +LAFPCNQFG  EP  + E++ FA   +   FPIF K+ + G    P ++FL  S+        +WNF K+LV+
Sbjct:   46 SFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSS----KKEPRWNFWKYLVN 172          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX7_HUMAN (Glutathione peroxidase 7 OS=Homo sapiens GN=GPX7 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.415e-24
Identity = 59/137 (43.07%), Postives = 76/137 (55.47%), Query Frame = 3
Query:  279 ATAAT*KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLV 689
            A A   +  YDF   +I GK V L K++G V L+VNVAS CG T  +Y  L  L        F +LAFPCNQFG QEP SN EI+ FA   +   FP+F K+ V G    P +++L  ++    G    WNF K+LV
Sbjct:   17 ACAQQEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLAQTS----GKEPTWNFWKYLV 149          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX7_BOVIN (Glutathione peroxidase 7 OS=Bos taurus GN=GPX7 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.415e-24
Identity = 59/137 (43.07%), Postives = 76/137 (55.47%), Query Frame = 3
Query:  279 ATAAT*KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLV 689
            A A   +  YDF   +I GK V L K++G V L+VNVAS CG T  +Y  L  L        F +LAFPCNQFG QEP SN EI+ FA   +   FP+F K+ V G    P +++L  ++    G    WNF K+LV
Sbjct:   16 ACAPREQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLTETS----GKEPTWNFWKYLV 148          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX8_DANRE (Probable glutathione peroxidase 8 OS=Danio rerio GN=gpx8 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.169e-24
Identity = 55/131 (41.98%), Postives = 79/131 (60.31%), Query Frame = 3
Query:  297 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLV 689
            K  Y + VKD  G+ V L K++GKV L+VNVAS   LT  +Y  L  L+ +  T  F +LAFPC+Q+G  E G++ EI+ FA + +   FPIF+K+ + G    P ++FL  S    +  + +WNF KFLV
Sbjct:   46 KDFYSYEVKDARGRTVSLEKYRGKVSLVVNVASGSELTEQSYRALQELHRELGTSHFNVLAFPCSQYGDTESGTSREIEAFAKSNYGVTFPIFNKIKIMGSEAEPAFRFLTDS----VQKIPRWNFWKFLV 172          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX_ENCCU (Probable phospholipid hydroperoxide glutathione peroxidase OS=Encephalitozoon cuniculi GN=ECU02_0440 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.198e-23
Identity = 55/135 (40.74%), Postives = 79/135 (58.52%), Query Frame = 3
Query:  297 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAG--GFLGDLVKWNFEKFLVDK 695
            ++ Y  + +  DG +V L  F+G V++I NVAS C    SNY   + L +K+  +G  IL FPCNQ+ GQE     EI+     ++   F +FDKVDV G    PV++ L ++    G LG+ +KWNF KFLVD+
Sbjct:    8 EAFYGLSARGWDGSEVSLGSFRGCVIMIANVASSCKFAESNYKSFAGLLDKFYRKGLRILLFPCNQYLGQESRPIEEIRGEVSKKYSDRFVVFDKVDVFGKGAHPVFRHLVNTKNGKGRLGNFIKWNFTKFLVDR 142          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX8A_XENLA (Probable glutathione peroxidase 8-A OS=Xenopus laevis GN=gpx8-A PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.043e-23
Identity = 55/129 (42.64%), Postives = 73/129 (56.59%), Query Frame = 3
Query:  306 YDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVD 692
            Y + V D  G+ V LSK++GK  L+VNVAS C    +NY  L  L+ ++    F +LAFPCNQFG  EPG+N EI   A   +   FP+F K+ + G    P Y+FL  S         +WNF K+LVD
Sbjct:   48 YSYEVTDAKGRAVALSKYRGKASLVVNVASGCPHAEANYRSLQELHREFGPSHFTVLAFPCNQFGESEPGTNQEIGALAKRNYGVTFPMFSKIKILGSEAEPAYRFLVDST----KKEPRWNFWKYLVD 172          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX8_TETNG (Probable glutathione peroxidase 8 OS=Tetraodon nigroviridis GN=gpx8 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.582e-22
Identity = 53/129 (41.09%), Postives = 73/129 (56.59%), Query Frame = 3
Query:  306 YDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVD 692
            Y F VKD  G+ V L K++GK  L+VNVASR   T SNY  L  L+ +     F +LAFPC QFG  E GS+ + + FA   +   FP F ++ + G    P ++FL  S    +  + +WNF KFLV+
Sbjct:   49 YSFEVKDAKGRTVSLEKYRGKASLVVNVASRSEQTESNYRSLQELHRELGPSHFNVLAFPCAQFGETETGSSRDSEAFAKATYGVTFPFFSRIKIMGSEAEPAFRFLTDS----VQKVPRWNFWKFLVN 173          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX3_CAEEL (Glutathione peroxidase OS=Caenorhabditis elegans GN=C11E4.2 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.121e-21
Identity = 57/158 (36.08%), Postives = 89/158 (56.33%), Query Frame = 3
Query:  291 T*KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFK--------AEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL---------------VKWNFEKFLVDK 695
            T +S++DF ++ + G+   LS+++GKV+L+VNVA+ C  T   Y++ + + EKY+ QG  ++AFPCNQF  QEP  N E+     T  +         E  I+ K+DVNG N  P+Y+F+K S    +  +               + WNFEKFL+D+
Sbjct:   37 TNQSIFDFQIETLQGEYTDLSQYRGKVILLVNVATFCAYT-QQYTDFNPMLEKYQAQGLTLVAFPCNQFYLQEPAENHELMN-GLTYVRPGNGWTPHQELHIYGKIDVNGDNHHPLYEFVKESCPQTVDKIGKTDELMYNPVRPSDITWNFEKFLIDR 192          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX5_MOUSE (Epididymal secretory glutathione peroxidase OS=Mus musculus GN=Gpx5 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 8.033e-20
Identity = 63/151 (41.72%), Postives = 80/151 (52.98%), Query Frame = 3
Query:  300 SLYDFTVKDIDGK-DVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLV---------------KWNFEKFLV 689
            ++YD+    ++GK D+P  +++GK +L VNVA+ CGLT   Y EL+ L E  K  G  IL FPCNQFG QEPG N EI       R    F   F +F K DVNG N   ++ FLK S       +V               +WNFEKFLV
Sbjct:   39 TIYDYEALSLNGKEDIPFKQYRGKHVLFVNVATYCGLT-IQYPELNALQEDLKPFGLVILGFPCNQFGKQEPGDNLEILPGLKYVRPGKGFLPNFQLFAKGDVNGENEQKIFTFLKRSCPHPSETVVMSKHTSWEPIKVHDIRWNFEKFLV 188          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX6_RAT (Glutathione peroxidase 6 OS=Rattus norvegicus GN=Gpx6 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.052e-19
Identity = 62/151 (41.06%), Postives = 81/151 (53.64%), Query Frame = 3
Query:  300 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSS---AGGFLGDL------------VKWNFEKFLV 689
            ++Y++    +DG + V   ++ GK +L VNVAS CGLT + Y EL+ L E+ +     +L FPCNQFG QEPG N EI       R    F   F +F+K DVNG N   V+ FLKSS       LG              ++WNFEKFLV
Sbjct:   39 TVYEYGANTLDGGEYVQFQQYAGKHILFVNVASFCGLT-ATYPELNTLQEELRPFNVSVLGFPCNQFGKQEPGKNSEILLGLKYVRPGGGFVPNFQLFEKGDVNGDNEQKVFSFLKSSCPPTSELLGSPEHLFWDPMKVHDIRWNFEKFLV 188          
The following BLAST results are available for this feature:
BLAST of FC930079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
GPX8_HUMAN1.415e-2444.27Probable glutathione peroxidase 8 OS=Homo sapiens ... [more]
GPX7_HUMAN1.415e-2443.07Glutathione peroxidase 7 OS=Homo sapiens GN=GPX7 P... [more]
GPX7_BOVIN1.415e-2443.07Glutathione peroxidase 7 OS=Bos taurus GN=GPX7 PE=... [more]
GPX8_DANRE9.169e-2441.98Probable glutathione peroxidase 8 OS=Danio rerio G... [more]
GPX_ENCCU1.198e-2340.74Probable phospholipid hydroperoxide glutathione pe... [more]
GPX8A_XENLA2.043e-2342.64Probable glutathione peroxidase 8-A OS=Xenopus lae... [more]
GPX8_TETNG8.582e-2241.09Probable glutathione peroxidase 8 OS=Tetraodon nig... [more]
GPX3_CAEEL1.121e-2136.08Glutathione peroxidase OS=Caenorhabditis elegans G... [more]
GPX5_MOUSE8.033e-2041.72Epididymal secretory glutathione peroxidase OS=Mus... [more]
GPX6_RAT3.052e-1941.06Glutathione peroxidase 6 OS=Rattus norvegicus GN=G... [more]

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Properties
Property NameValue
Genbank descriptionC34003E10EF PostHarvC1 Citrus clementina cDNA clone C34003E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930079 ID=FC930079; Name=FC930079; organism=Citrus clementina; type=EST; length=726bp
GCTCTGTTANACAACGATTGATTCACTTAAATTCCATCTCAATGGCTTCT
TATTCGATGCCTTTCTCTGCAGCTTTCTCCTCACCTTTACGGCATTTCAC
ACAAATCAAAACATGCCCTGCTGCATGGGCTTCATCAATGGCGGCTTCAT
GGACTCCTACTAATTCAATCAAATCATCAATTGGGTCCGCTAAACCAGGC
TTTCTTCAACATGGGCTGTTTTCCCAATCTTCAAATTTGCCTGGGTTTTT
CGTGAAACGTCGTTCCTTTGGTGTTCACGCTACAGCTGCTACTTAGAAGT
CTTTATATGACTTCACCGTCAAGGATATTGATGGTAAAGATGTTCCTCTT
AGCAAGTTTAAGGGCAAAGTTCTGTTGATTGTGAATGTCGCTTCAAGATG
TGGCTTGACACCATCTAATTACTCGGAGCTCTCTCACTTATATGAGAAGT
ACAAGACTCAAGGATTTGAGATTCTAGCTTTCCCTTGCAATCAATTTGGT
GGGCAAGAGCCTGGATCAAACCCTGAGATCAAGGAATTCGCTTGTACTAG
GTTTAAGGCAGAATTTCCCATATTTGACAAGGTTGATGTAAATGGACCAA
ACACAGCTCCAGTTTACCAGTTTTTGAAGTCAAGTGCTGGGGGATTTTTA
GGCGACCTTGTCAAGTGGAACTTTGAGAAGTTCTTAGTGGACAAAATGGT
AAGTCATCGAGAGATATCCACCACTA
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