FC930079

Overview
NameFC930079
Unique NameFC930079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPXC_DIRIM (Glutathione peroxidase OS=Dirofilaria immitis PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.375e-18
Identity = 58/157 (36.94%), Postives = 83/157 (52.87%), Query Frame = 3
Query:  291 T*KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE-------IKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKS---SAGGFLGDL------------VKWNFEKFLVDK 695
            T +++YDF V  +DG +  L++++GKVLL+VNVA+ C  T   Y++ + + E       +ILAFPCNQF  QEP  N E       ++            IF KV+VNG +  P+Y+FLK         +GD             + WNFEKFL+DK
Sbjct:   36 TSQTIYDFHVPTLDGSEKSLAEYRGKVLLLVNVATYCAYT-FQYNDFNPMLENNSNGTLKILAFPCNQFLLQEPAENHELLNGLKYVRPGNGWEPHGNMHIFGKVEVNGDDHHPLYKFLKEHCPQTVPIIGDRHQLMYNPIGTNDIIWNFEKFLIDK 191          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX6_MOUSE (Glutathione peroxidase 6 OS=Mus musculus GN=Gpx6 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.408e-18
Identity = 61/151 (40.40%), Postives = 79/151 (52.32%), Query Frame = 3
Query:  300 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSS---AGGFLGDL------------VKWNFEKFLV 689
            ++Y++    IDG   V   ++ GK +L VNVAS CGLT + Y EL+ L E+ K     +L FPCNQFG QEPG N EI       R    +   F +F+K DVNG N   V+ FLK+S        G              ++WNFEKFLV
Sbjct:   39 TVYEYGANTIDGGGFVNFQQYAGKHILFVNVASFCGLT-ATYPELNTLQEELKPFNVTVLGFPCNQFGKQEPGKNSEILLGLKYVRPGGGYVPNFQLFEKGDVNGDNEQKVFSFLKNSCPPTSELFGSPEHLFWDPMKIHDIRWNFEKFLV 188          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX5_HUMAN (Epididymal secretory glutathione peroxidase OS=Homo sapiens GN=GPX5 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.408e-18
Identity = 60/151 (39.74%), Postives = 79/151 (52.32%), Query Frame = 3
Query:  300 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSA---GGFLGDL------------VKWNFEKFLV 689
            ++YD+    ++  + V   ++ GK +L VNVA+ CGLT + Y EL+ L E+ K  G  +L FPCNQFG QEPG N EI       R    F   F +F+K DVNG     V+ FLK S       LG              ++WNFEKFLV
Sbjct:   39 TIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLT-AQYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLV 188          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX3_MOUSE (Glutathione peroxidase 3 OS=Mus musculus GN=Gpx3 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 7.518e-18
Identity = 62/151 (41.06%), Postives = 79/151 (52.32%), Query Frame = 3
Query:  300 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAG------GFLGDL---------VKWNFEKFLV 689
            ++Y++    IDG++ +P  ++ GK +L VNVAS  GLT   Y EL+ L E+    G  IL FP NQFG QEPG N EI       R    F   F +F+K DVNG      Y FLK+S        G  G L         ++WNFEKFLV
Sbjct:   39 TIYEYGALTIDGEEYIPFKQYAGKYILFVNVASYUGLT-DQYLELNALQEELGPFGLVILGFPSNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTAELLGSPGRLFWEPMKIHDIRWNFEKFLV 188          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX5_RAT (Epididymal secretory glutathione peroxidase OS=Rattus norvegicus GN=Gpx5 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.282e-17
Identity = 59/151 (39.07%), Postives = 80/151 (52.98%), Query Frame = 3
Query:  300 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLK-----------SSAGGFLGDL----VKWNFEKFLV 689
            ++Y++    ++GK+ +P  ++ GK +L VNVA+ CGLT   Y EL+ L +  K  G  IL FPCNQFG QEPG N EI       R    F   F +F K DVNG     ++ FLK           +S   F   +    ++WNFEKFLV
Sbjct:   39 TIYNYEALSLNGKERIPFKQYAGKHVLFVNVATYCGLT-IQYPELNALQDDLKQFGLVILGFPCNQFGKQEPGDNTEILPGLKYVRPGKGFLPNFQLFAKGDVNGEKEQEIFTFLKRSCPHPSETVVTSKHTFWEPIKVHDIRWNFEKFLV 188          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX1_RAT (Glutathione peroxidase 1 OS=Rattus norvegicus GN=Gpx1 PE=1 SV=4)

HSP 1 Score: 89.7373 bits (221), Expect = 1.675e-17
Identity = 56/161 (34.78%), Postives = 82/161 (50.93%), Query Frame = 3
Query:  282 TAAT*KSLYDFTVKDI-DGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLV 689
            +A    ++Y F+ + +  G+ V L   +GKVLLI NVAS  G T  +Y+E++ L ++   +G  +L FPCNQFG QE G N EI       R    F+  F +F+K +VNG    P++ FL+++      D                    + WNFEKFLV
Sbjct:    7 SAVAQSTVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTTRDYTEMNDLQKRLGPRGLVVLGFPCNQFGHQENGKNEEILNSLKYVRPGGGFEPNFTLFEKCEVNGEKAHPLFTFLRNALPAPSDDPTALMTDPKYIIWSPVCRNDISWNFEKFLV 167          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX1_PONPY (Glutathione peroxidase 1 OS=Pongo pygmaeus GN=GPX1 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.187e-17
Identity = 57/160 (35.62%), Postives = 80/160 (50.00%), Query Frame = 3
Query:  285 AAT*KSLYDFTVKDI-DGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLV 689
            AA  +S+Y F+ + +  G+ V L   +GKVLLI NVAS  G T  +Y++++ L  +   +G  +L FPCNQFG QE   N EI       R    F+  F +F+K +VNG    P++ FL+ +      D                    V WNFEKFLV
Sbjct:    8 AAAAQSVYSFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLV 167          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX1_MOUSE (Glutathione peroxidase 1 OS=Mus musculus GN=Gpx1 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.187e-17
Identity = 57/161 (35.40%), Postives = 83/161 (51.55%), Query Frame = 3
Query:  282 TAAT*KSLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLV 689
            +AA   ++Y F+ + + G + V L   +GKVLLI NVAS  G T  +Y+E++ L ++   +G  +L FPCNQFG QE G N EI       R    F+  F +F+K +VNG    P++ FL+++      D                    + WNFEKFLV
Sbjct:    7 SAAAQSTVYAFSARPLTGGEPVSLGSLRGKVLLIENVASLUGTTIRDYTEMNDLQKRLGPRGLVVLGFPCNQFGHQENGKNEEILNSLKYVRPGGGFEPNFTLFEKCEVNGEKAHPLFTFLRNALPTPSDDPTALMTDPKYIIWSPVCRNDIAWNFEKFLV 167          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX1_PIG (Glutathione peroxidase 1 OS=Sus scrofa GN=GPX1 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.857e-17
Identity = 55/158 (34.81%), Postives = 82/158 (51.90%), Query Frame = 3
Query:  297 KSLYDFTVKDI-DGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTR-------FKAEFPIFDKVDVNGPNTAPVYQFLKSS-------AGGFLGDL------------VKWNFEKFLV 689
            +S+Y F+ + +  G+ + L   +GKVLLI NVAS  G T  +Y++++ L  +   +G  +L FPCNQFG QE   N EI    C +       F+  F +F+K +VNG N  P++ FL+ +       A   + D             + WNFEKFLV
Sbjct:   17 RSVYAFSARPLAGGEPISLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNGEI--LNCLKYVRPGGGFEPNFMLFEKCEVNGANAHPLFAFLREALPTPSDDATALMTDPKFITWSPVCRNDIAWNFEKFLV 172          
BLAST of FC930079 vs. ExPASy Swiss-Prot
Match: GPX_MCV1 (Glutathione peroxidase OS=Molluscum contagiosum virus subtype 1 GN=GPX1 PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.731e-17
Identity = 58/178 (32.58%), Postives = 83/178 (46.63%), Query Frame = 3
Query:  231 SNLPGFFVKRRSFGVHATAAT*KSLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEF-----ACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDL-------------------VKWNFEKFLV 689
            +  P F      +     AA  +S+Y F+ + I G + V L   +G+VLLI NVAS  G T   Y++++ L  +   +G  +L FPCNQFG QE   N EI            F+  F +F+K +VNG    P++ FL+ +      D+                   V WNFEKFLV
Sbjct:    7 ARFPRFSELCAKYAAQLAAAETRSVYAFSARPITGGEPVSLGFLRGRVLLIENVASLUGSTVREYTQMNELQRRLGARGLVVLGFPCNQFGHQENAQNAEILPSLKHVRPGNGFEPNFMLFEKCEVNGARAHPLFAFLREALPAPSDDMSTLVSDPQLIAWSPVCRNDVAWNFEKFLV 184          
The following BLAST results are available for this feature:
BLAST of FC930079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
GPXC_DIRIM3.375e-1836.94Glutathione peroxidase OS=Dirofilaria immitis PE=2... [more]
GPX6_MOUSE4.408e-1840.40Glutathione peroxidase 6 OS=Mus musculus GN=Gpx6 P... [more]
GPX5_HUMAN4.408e-1839.74Epididymal secretory glutathione peroxidase OS=Hom... [more]
GPX3_MOUSE7.518e-1841.06Glutathione peroxidase 3 OS=Mus musculus GN=Gpx3 P... [more]
GPX5_RAT1.282e-1739.07Epididymal secretory glutathione peroxidase OS=Rat... [more]
GPX1_RAT1.675e-1734.78Glutathione peroxidase 1 OS=Rattus norvegicus GN=G... [more]
GPX1_PONPY2.187e-1735.63Glutathione peroxidase 1 OS=Pongo pygmaeus GN=GPX1... [more]
GPX1_MOUSE2.187e-1735.40Glutathione peroxidase 1 OS=Mus musculus GN=Gpx1 P... [more]
GPX1_PIG2.857e-1734.81Glutathione peroxidase 1 OS=Sus scrofa GN=GPX1 PE=... [more]
GPX_MCV13.731e-1732.58Glutathione peroxidase OS=Molluscum contagiosum vi... [more]

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Properties
Property NameValue
Genbank descriptionC34003E10EF PostHarvC1 Citrus clementina cDNA clone C34003E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930079 ID=FC930079; Name=FC930079; organism=Citrus clementina; type=EST; length=726bp
GCTCTGTTANACAACGATTGATTCACTTAAATTCCATCTCAATGGCTTCT
TATTCGATGCCTTTCTCTGCAGCTTTCTCCTCACCTTTACGGCATTTCAC
ACAAATCAAAACATGCCCTGCTGCATGGGCTTCATCAATGGCGGCTTCAT
GGACTCCTACTAATTCAATCAAATCATCAATTGGGTCCGCTAAACCAGGC
TTTCTTCAACATGGGCTGTTTTCCCAATCTTCAAATTTGCCTGGGTTTTT
CGTGAAACGTCGTTCCTTTGGTGTTCACGCTACAGCTGCTACTTAGAAGT
CTTTATATGACTTCACCGTCAAGGATATTGATGGTAAAGATGTTCCTCTT
AGCAAGTTTAAGGGCAAAGTTCTGTTGATTGTGAATGTCGCTTCAAGATG
TGGCTTGACACCATCTAATTACTCGGAGCTCTCTCACTTATATGAGAAGT
ACAAGACTCAAGGATTTGAGATTCTAGCTTTCCCTTGCAATCAATTTGGT
GGGCAAGAGCCTGGATCAAACCCTGAGATCAAGGAATTCGCTTGTACTAG
GTTTAAGGCAGAATTTCCCATATTTGACAAGGTTGATGTAAATGGACCAA
ACACAGCTCCAGTTTACCAGTTTTTGAAGTCAAGTGCTGGGGGATTTTTA
GGCGACCTTGTCAAGTGGAACTTTGAGAAGTTCTTAGTGGACAAAATGGT
AAGTCATCGAGAGATATCCACCACTA
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